Rh5DG099700

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004130
Physical Location & Seq
Forward (+)
9145319 .. 9150267
4949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG099700.1

Sequence Viewer

Length: 4602 bp
ATGGGTTGTAATTCAGATGGTGGGTCCCAAGTGTTTAGGGGTGAAGATGATGATGAAGAATATGAGGAGGATGGTAGGGGTAGTCGGTTTCTTGGGTTTATGTTTGGTAATGTGGATGACTCGGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGAAGCATTTTGCTGCACTTTCTGAGAAGCTTGGTCCTGCGTTCACGGATATGGACATGTCAGTGAAGTTACCAAGGACATTAAGCGATGCGGTGGAGCAAGATTATGATGAGAAGGCTGAGAATGCTGTGAATTATTTTGACATTGATGAGGATTTTGAGGGTCCGGAGATTGAAGGTGCTACTGAGGAGGACCATCTTTTGCCGAGAGATGAATACCTTTCTGCTAAAGTTTCAGTGGATAAAATTCGAGAAGTGGAACATGATGTGGTTGAAAATTATGATGAGGAGAGTGAACAGGAAAAGGAACAAGAGGTGGTTGAACAGGATGTTAGAATTACCCCACCGCTGCCAGTTCTATGCATAGAAGATGGAGAGGTGATCCTAAGATTCTCAGAAATCTTTGGCACTCATGTAAAGGAGGCAGTTAAAAGAAACCATAGGTACTCTGTTTGCAAAAGTATGCATAAATCCATGGATGTTACAGATATTGTTGAAGAGGATGAAGAGGCATTTCTCAAAGGAACTAGTGAAGGATTTACAGCTTTGAAAGAAGCTGATGGAGTGAAACATAACATCTCAGAACTGAATGATGATGATTTGGAATTTGCAAAATTTCGTGTTCACAAAGAGGCTACCTCATTTGCTGTGCTGGATGGGCCAGGAAAGGGCACGTACCTTTTTGCGGCACCAATGAAAGAAGATCTAGATGTGGATCTTTGTGTGGAAAGGCAGTCACCTTCGTGTCCTACATTTTACCCTCTTGATCAACAAGACTGGGAAGATGGAATTATTTGGGACAAGTCTCCTGTAATGAGTGACAATGCTGTTGAGAGTTGTGAAATGTCAGGACCTGACCACACCTCAGTTGATAGTGAAACAGAATCTGATAGTGGGTCGCAAAATATTCAATTAGAGTCCCAAAAAGAGTCTGATGAGAAAAGGCATGATTTTATGCTATTTAGCCGGTCTAGTCTGTTGGAGCCTTTTGGCTCAAGAAATTCAGCAGGACCTTTATGTGTTCCTGTATCGGAAAGCAGATACCATCCCCAACTCTTAAGGCTAGAATCTCGATTTGAAGTGGATGACCAGGCAAATGGTAGAATGGAGAATATCGACCAGAAGCTTCATAAGAGAGATGCTGTGAGGCAATTCAGCAAGCTTACCTCACATAACAGAGACATGCTGGAAGGATCGTGGTTAGACCAGATCATATGGGACCCAAACATGCCTATTAGGAAGCCAAAGCTTATCCTTGATCTTGAAGATGAGCAAATGCTCTTTGAGATTTTGGATAACAAGGATAGTGAACATCTTAAGCTTCATTCAGGGGCCACGATTATAACTCCCCCTCTAAAGTCAAGCAATGAGGATTCTTTGGATTTGCCCAGTCATGGAGCTCAGTTTTGTTGGCGATATGTAGCTAATGACAAGCACTATGCAAACAGGAAAACATCTTATCAACTACAATCGAATTCTAAAAGACGCACTGCTCAAAGCATAAAGATTTATCACTCACAATCTGCACTTCGGCTACAGACTATGAAGCTGAAGTTAAGCAATAAGGAGGTTGCTAATTTTCATCGACCAAAGGCTTTATGGTATCCCTGCGACGATGAAAAAGCTGTAAAAGAACTAGGGAAGCTGCCTACTCAAGGACCAATGAAAATTATTATAAAGAGCTTGGGTGGCAAAGGCAGTAAGCTTCATGTTGATCATGAGGAAACTGTCTTTTCTGTCAAAGCAAAAGCTTCAAAAAAGCTAGATTTTAAGTCATCTGAAACAGTGAGGATGTTTTATAAAGGGAAGGAACTTGAAGATGATAAATCTCTAGCTGCTCAAAATGTTCAGCGGAACTCTTTGCTTTATCTGGTCCGTACAAATATATATTTGTTGCCAAGGTCGCCAAAACTTCCTGGTGAGAATAAATCGTTGCGTCCTCCTGGAGCATTTAAGAAGAAATCTGACCTTTCAGCTAAAGATGGCCATGTCTTTCTAGTAGAGTATTGTGAAGAAAGACCTTTACTTCTGAGCAATATTGGTATGGGTGCAAGATTGTGCACTTATTATCAAAATTCAGCCCCAGATGATCAAAATGGATCTTTGTTGCACAATGAAAACAGCAGCTCAGGTCATGTCATTTCGCTAAACCCTGCTGATAAATCACCTTTTCTTGGAGATATAAAAGCCGGTTGCTGTCAGTCATCTCTTGAGACAAACATGTATAGAGCACCTCTTTTTTCTCATAAGGTGCCGTCAACTGATTATCTGTTAGTTCGTTCTGCAAAGGGAAAGCTTTCAATTAGACGCATTGACAAGCTTAATGTTGTAGGGCAACAGGAACCTCTCATGAAGGTAATGTCTCCTGGAACTAAGAATCTGAAAAATTACATGCTTAACAGGCTCCTAGTCTACATGTGCCGTGAGTTCCGTGCTGCCGAAGAGCGCCATGTCCCTCCTTGTATTTGTGTAGATGAGTTACGTGCACAATTTCCTTACCTATCTGATCCCTTTATCAAAAACAAAGTGAAGGAACTTGTGAATTTGCCGAAGGGATCAAGTGGACATTGGGTTAAGAAGAGCAATTTCAGGATTTTCTCAGAGGATGAATTAAGAAATATGGTGAAACCAGAAGAGGTGTGTGCCTATGAAAGCATGCAAGCTGGTCTTTATCGCCTCAAACATTTAAGAATTACTCAAACTTATCCTTCTGTCATGTCATCTGCAATGAGTCATCTCCACGACGAAGGTAATACTCTGGCTGCTGCATGTCACATCGAAAGGGAACTACAGACGACTCCATGGAATTTGAGTTGCAATTTTGTAGCCTGTACAATGGGAAAAGAAAATATTGAGCGTTTAGAAATATCTGGCCTTGGTGATCCATCTGGCCGGGGCCTAGGTTTTAGTTATGTTCACGCTGCTCCAAAATCATCAATGTCCAATGCAGTGGGAAAGAAAAACTGTGCTACTGGTAGAGGACGTTCAGATTCTTTCAGCAGGGAGAGGTGTCAGGAAATTTGGGAACAGCAAGTTCATAGTCTTTCAGCAGTAGGCAGTGATGAGAATGAGACTGATTCTGAAGGAAATTATAGTGATCTGGATTCCTTTGCTGGGAGTTTAGAAAATCTGCTTGATGCAGAAGAATGTGAAAAGGGGTTAGGGGGTGACCATGAATTTGAGTGTGACAAAGAAGACGACATTAAAGGGCTCGTAATGAGAAGGCTCCTGTCCTTGAATCCAGCAGAGGAAAATGAAGATGAAGCAGCTGAAGCAGCTGAGTTATGCCGGTTGCTGATGGGTGATGAAACTGAGAGGAAGAAAAAGAAAACAACAAGAGTTTTGGAGGAAGCTAGGCTGCTTCCAGGCTCACGAACAAGTTTTGCTTTTGAGAATGCAGATAGGGTAAAGCAAAACATTGTTGCAGCACAATTTGATGGTTCCTATACTCCTAAAGAGAATCCAATTGGAGACAGCAAAGTGATGGAAAATCTTCTTAAAAGAAGCAAGACTGGAGAATTAGAAGGGATGAGAGAGAATGGTACTACACTTATGCATAAGAAACTAAACGCATCAGGAAATGGTGTCAAGATGTTTGGTGAGAAGAAGCCAGTAAGAGAGAATTTTGTCTGTGGAGCCTGTGGTCAGCATGGACACATGAGGACAAACAAGAACTGCCCCAAGTTTGGAAAAGATCTGAAAGTGCACATTGAAACTCCAGATCTGGAGAATGTACTCGGAAGGTCCATTCCTCTGAACTCATCTAGTCAGTTTCAGCAGAAAACTACAACAAAGAAGCTGATACCAAAGATTGTAATTGATGTTGAAGGTTCTGAGGTTGAAAACCTTGGTCTGACCTCAAAGGTTGTTCCATTGACACTCAAAGTTGCGTTAGGTGAAAAGTTTCCTGATAAACAGGCTCCTGGAGAAACAGAGAGTTATCGGAATCCACTCACATCTGATCTTGAAACTGGGAATCCCGCTGTTAAGGTTAGTAAAATAATAATTTCTAACAAGACGAAACCTGGAGGGGTATCAGTTGAATCTCATAAACCCCCTATTGGGATATGGCCTCCCACAGATATAGATAGGGGTCATGTTAAGTCACAAAAGCCATTGCCAACTATAGTCATACGGCCTCCAGCAACCACAGTTAGAGATCATGTGGAATCTCAAAAGCCCTCTGTTACTAAACTGCCATTAGTGGAAGCTCACAAAGAGCAACATCATCAGAAAAGACATGAGAAGCTGAATAGCATGTATTTTCCTATTGAAGCAGCGAAAAAGAAAGCAAGAGATGACAGAAGATTGGGGGAGGAGCAAGAGAAACGAAGAATTGAAGAGAGTGCCAGGAGGCTGTATGACAAGGAAATTAGGATGGCAAAGGAGCAAGAAAGACGTGCAGAGCTCAAAAAATATGAAGCAGCCATCAAACGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

1533

Amino Acids

172.87

Weight (kDa)

5.67

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP-binding PF09247 18 - 62 1.1e-09 TATA box-binding protein binding
DUF3591 PF12157 528 - 1053 3.8e-98 Protein of unknown function (DUF3591)
Rad60-SLD PF11976 608 - 675 5.6e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 610 - 680 5.3e-08 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1502, 1835, 1959
AccB1I GGYRCC 2 cut(s) 847, 2410
AccI GTMKAC 1 cut(s) 2571
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 5 cut(s) 251, 506, 845, 2011, 4140
AclWI GGATC 7 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035
AcoI YGGCCR 2 cut(s) 2143, 3049
AcuI CTGAAG 3 cut(s) 1730, 3261, 3450
AfaI GTAC 6 cut(s) 605, 836, 2038, 2992, 3703, 3894
AflII CTTAAG 2 cut(s) 1216, 1475
AflIII ACRYGT 3 cut(s) 216, 2379, 2574
AhlI ACTAGT 1 cut(s) 686
AjiI CACGTC 1 cut(s) 4559
AjnI CCWGG 9 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4081, 4183, 4508
AleI CACNNNNGTG 1 cut(s) 901
Alw21I GWGCWC 6 cut(s) 1561, 2222, 2392, 2647, 3867, 4569
Alw26I GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
Alw44I GTGCAC 3 cut(s) 2218, 2643, 3863
AlwI GGATC 7 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035
AlwNI CAGNNNCTG 2 cut(s) 1013, 1046
Ama87I CYCGRG 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 8 cut(s) 818, 1491, 2143, 3031, 3049, 3055, 4229, 4295
ApaLI GTGCAC 3 cut(s) 2218, 2643, 3863
ArsI GACNNNNNNTTYG 2 cut(s) 3320, 3352
Asp700I GAANNNNTTC 3 cut(s) 2455, 3651, 4062
AspA2I CCTAGG 1 cut(s) 3058
AspLEI GCGC 1 cut(s) 2607
AsuC2I CCSGG 1 cut(s) 3053
AvaI CYCGRG 1 cut(s) 121
AvrII CCTAGG 1 cut(s) 3058
BaeGI GKGCMC 4 cut(s) 833, 2222, 2647, 3867
BalI TGGCCA 1 cut(s) 2145
BanI GGYRCC 2 cut(s) 847, 2410
BanII GRGCYC 3 cut(s) 1561, 3372, 4569
BbsI GAAGAC 1 cut(s) 3360
Bbv12I GWGCWC 6 cut(s) 1561, 2222, 2392, 2647, 3867, 4569
BceAI ACGGC 3 cut(s) 2398, 2565, 4310
BciT130I CCWGG 9 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4083, 4185, 4510
BciVI GTATCC 1 cut(s) 1773
BclI TGATCA 3 cut(s) 925, 1873, 2248
BcnI CCSGG 1 cut(s) 3053
BcoDI GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
BcuI ACTAGT 1 cut(s) 686
BfmI CTRYAG 3 cut(s) 1694, 2948, 4284
BfoI RGCGCY 1 cut(s) 2608
BfrI CTTAAG 2 cut(s) 1216, 1475
BfuI GTATCC 1 cut(s) 1773
BglII AGATCT 3 cut(s) 862, 3853, 3880
BlnI CCTAGG 1 cut(s) 3058
BmeT110I CYCGRG 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 4559
BmrI ACTGGG 3 cut(s) 946, 1542, 4140
BmsI GCATC 5 cut(s) 145, 238, 1288, 3286, 3740
BmuI ACTGGG 3 cut(s) 946, 1542, 4140
BpiI GAAGAC 1 cut(s) 3360
BplI GAGNNNNNCTC 2 cut(s) 782, 814
BpmI CTGGAG 7 cut(s) 2124, 3693, 3861, 3905, 4104, 4206, 4284
Bpu10I CCTNAGC 1 cut(s) 2287
BpuEI CTTGAG 3 cut(s) 1138, 1797, 2390
BpuMI CCSGG 1 cut(s) 3053
BsaAI YACGTR 2 cut(s) 834, 2642
BsaBI GATNNNNATC 1 cut(s) 873
BsaJI CCNNGG 8 cut(s) 233, 633, 2057, 2960, 3034, 3052, 3058, 4006
BsaWI WCCGGW 1 cut(s) 325
Bse118I RCCGGY 3 cut(s) 1125, 2348, 3447
Bse1I ACTGG 7 cut(s) 512, 941, 1548, 3136, 3676, 3770, 4135
Bse3DI GCAATG 3 cut(s) 1531, 2892, 4274
Bse8I GATNNNNATC 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 9 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4083, 4185, 4510
BseDI CCNNGG 8 cut(s) 233, 633, 2057, 2960, 3034, 3052, 3058, 4006
BseJI GATNNNNATC 1 cut(s) 873
BseMI GCAATG 3 cut(s) 1531, 2892, 4274
BseNI ACTGG 7 cut(s) 512, 941, 1548, 3136, 3676, 3770, 4135
BseRI GAGGAG 4 cut(s) 80, 362, 461, 4490
BseSI GKGCMC 4 cut(s) 833, 2222, 2647, 3867
BseYI CCCAGC 1 cut(s) 3272
BsgI GTGCAG 3 cut(s) 159, 1668, 4581
BshFI GGCC 8 cut(s) 820, 1493, 2145, 3033, 3051, 3057, 4231, 4297
BshNI GGYRCC 2 cut(s) 847, 2410
BsiHKAI GWGCWC 6 cut(s) 1561, 2222, 2392, 2647, 3867, 4569
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 5 cut(s) 326, 1126, 2349, 3052, 3448
BslFI GGGAC 5 cut(s) 10, 971, 1063, 1391, 2597
BsmAI GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
BsmFI GGGAC 5 cut(s) 10, 971, 1063, 1391, 2597
BsmI GAATGC 2 cut(s) 289, 3559
BsnI GGCC 8 cut(s) 820, 1493, 2145, 3033, 3051, 3057, 4231, 4297
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 8 cut(s) 833, 1561, 2222, 2392, 2647, 3372, 3867, 4569
Bsp13I TCCGGA 1 cut(s) 325
Bsp1407I TGTACA 1 cut(s) 2990
Bsp19I CCATGG 2 cut(s) 633, 2960
BspACI CCGC 5 cut(s) 251, 506, 845, 2011, 4140
BspANI GGCC 8 cut(s) 820, 1493, 2145, 3033, 3051, 3057, 4231, 4297
BspEI TCCGGA 1 cut(s) 325
BspHI TCATGA 2 cut(s) 1876, 2508
BspPI GGATC 7 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035
BspQI GCTCTTC 2 cut(s) 2595, 2732
BspT107I GGYRCC 2 cut(s) 847, 2410
BspTI CTTAAG 2 cut(s) 1216, 1475
BsrDI GCAATG 3 cut(s) 1531, 2892, 4274
BsrFI RCCGGY 3 cut(s) 1125, 2348, 3447
BsrGI TGTACA 1 cut(s) 2990
BsrI ACTGG 7 cut(s) 512, 941, 1548, 3136, 3676, 3770, 4135
BssAI RCCGGY 3 cut(s) 1125, 2348, 3447
BssECI CCNNGG 8 cut(s) 233, 633, 2057, 2960, 3034, 3052, 3058, 4006
BssT1I CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 4006
Bst2UI CCWGG 9 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4083, 4185, 4510
Bst4CI ACNGT 4 cut(s) 1888, 1945, 3125, 4312
Bst6I CTCTTC 6 cut(s) 651, 660, 2595, 2732, 2787, 4494
BstAFI CTTAAG 2 cut(s) 1216, 1475
BstAUI TGTACA 1 cut(s) 2990
BstBAI YACGTR 2 cut(s) 834, 2642
BstC8I GCNNGC 3 cut(s) 1319, 2816, 2820
BstDSI CCRYGG 2 cut(s) 633, 2960
BstEII GGTNACC 1 cut(s) 3326
BstENI CCTNNNNNAGG 2 cut(s) 149, 1812
BstH2I RGCGCY 1 cut(s) 2608
BstHHI GCGC 1 cut(s) 2607
BstMAI GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
BstMWI GCNNNNNNNGC 7 cut(s) 284, 817, 1848, 2062, 2560, 3431, 3434
BstNI CCWGG 9 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4083, 4185, 4510
BstNSI RCATGY 9 cut(s) 220, 1345, 1390, 2383, 2554, 2578, 2818, 2931, 4420
BstPI GGTNACC 1 cut(s) 3326
BstSFI CTRYAG 3 cut(s) 1694, 2948, 4284
BstSLI GKGCMC 4 cut(s) 833, 2222, 2647, 3867
BstV2I GAAGAC 1 cut(s) 3360
BstX2I RGATCY 5 cut(s) 862, 874, 2258, 3853, 3880
BstXI CCANNNNNNTGG 2 cut(s) 1256, 3109
BstYI RGATCY 5 cut(s) 862, 874, 2258, 3853, 3880
BsuI GTATCC 1 cut(s) 1773
BsuRI GGCC 8 cut(s) 820, 1493, 2145, 3033, 3051, 3057, 4231, 4297
BtgI CCRYGG 2 cut(s) 633, 2960
BtgZI GCGATG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 4559
BtsI GCAGTG 3 cut(s) 1647, 3114, 3223
BtsIMutI CAGTG 6 cut(s) 228, 402, 1647, 1950, 3114, 3223
Cac8I GCNNGC 3 cut(s) 1319, 2816, 2820
CaiI CAGNNNCTG 2 cut(s) 1013, 1046
CciI TCATGA 2 cut(s) 1876, 2508
CfoI GCGC 1 cut(s) 2607
Cfr10I RCCGGY 3 cut(s) 1125, 2348, 3447
CseI GACGC 3 cut(s) 1653, 2084, 2475
Csp6I GTAC 6 cut(s) 604, 835, 2037, 2991, 3702, 3893
CviQI GTAC 6 cut(s) 604, 835, 2037, 2991, 3702, 3893
EaeI YGGCCR 2 cut(s) 2143, 3049
Eam1104I CTCTTC 6 cut(s) 651, 660, 2595, 2732, 2787, 4494
EarI CTCTTC 6 cut(s) 651, 660, 2595, 2732, 2787, 4494
Ecl136II GAGCTC 2 cut(s) 1559, 4567
Eco130I CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 4006
Eco24I GRGCYC 3 cut(s) 1561, 3372, 4569
Eco53kI GAGCTC 2 cut(s) 1559, 4567
Eco57I CTGAAG 3 cut(s) 1730, 3261, 3450
Eco88I CYCGRG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 3326
EcoICRI GAGCTC 2 cut(s) 1559, 4567
EcoNI CCTNNNNNAGG 2 cut(s) 149, 1812
EcoO109I RGGNCCY 5 cut(s) 24, 1010, 1169, 1378, 3055
EcoO65I GGTNACC 1 cut(s) 3326
EcoRI GAATTC 1 cut(s) 1633
EcoRII CCWGG 9 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4081, 4183, 4508
EcoT14I CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 4006
EcoT22I ATGCAT 3 cut(s) 524, 627, 3717
EcoT38I GRGCYC 3 cut(s) 1561, 3372, 4569
ErhI CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 4006
FalI AAGNNNNNCTT 4 cut(s) 2811, 2843, 3529, 3561
FaqI GGGAC 5 cut(s) 10, 971, 1063, 1391, 2597
FauI CCCGC 1 cut(s) 4147
FauNDI CATATG 1 cut(s) 1373
FbaI TGATCA 3 cut(s) 925, 1873, 2248
FblI GTMKAC 1 cut(s) 2571
FriOI GRGCYC 3 cut(s) 1561, 3372, 4569
GlaI GCGC 1 cut(s) 2606
GsaI CCCAGC 1 cut(s) 3276
GsuI CTGGAG 7 cut(s) 2124, 3693, 3861, 3905, 4104, 4206, 4284
HaeII RGCGCY 1 cut(s) 2608
HaeIII GGCC 8 cut(s) 820, 1493, 2145, 3033, 3051, 3057, 4231, 4297
HapII CCGG 5 cut(s) 326, 1126, 2349, 3052, 3448
HgaI GACGC 3 cut(s) 1653, 2084, 2475
HhaI GCGC 1 cut(s) 2607
Hin6I GCGC 1 cut(s) 2605
HinP1I GCGC 1 cut(s) 2605
HincII GTYRAC 1 cut(s) 2418
HindII GTYRAC 1 cut(s) 2418
HindIII AAGCTT 9 cut(s) 188, 1283, 1319, 1406, 1478, 1862, 1908, 2453, 2477
HpaII CCGG 5 cut(s) 326, 1126, 2349, 3052, 3448
Hpy99I CGWCG 2 cut(s) 1775, 2906
HpyCH4III ACNGT 4 cut(s) 1888, 1945, 3125, 4312
HpyCH4IV ACGT 4 cut(s) 833, 2641, 3142, 4558
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 817, 1848, 2062, 2560, 3431, 3434
HpySE526I ACGT 4 cut(s) 833, 2641, 3142, 4558
HspAI GCGC 1 cut(s) 2605
KflI GGGWCCC 2 cut(s) 24, 1378
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 3 cut(s) 925, 1873, 2248
LguI GCTCTTC 2 cut(s) 2595, 2732
LweI GCATC 5 cut(s) 145, 238, 1288, 3286, 3740
MaeII ACGT 4 cut(s) 833, 2641, 3142, 4558
MfeI CAATTG 1 cut(s) 3624
MflI RGATCY 5 cut(s) 862, 874, 2258, 3853, 3880
MhlI GDGCHC 8 cut(s) 833, 1561, 2222, 2392, 2647, 3372, 3867, 4569
MlsI TGGCCA 1 cut(s) 2145
MluNI TGGCCA 1 cut(s) 2145
MlyI GAGTC 5 cut(s) 113, 1085, 1097, 2899, 2950
MmeI TCCRAC 1 cut(s) 1119
Mox20I TGGCCA 1 cut(s) 2145
Mph1103I ATGCAT 3 cut(s) 524, 627, 3717
MroI TCCGGA 1 cut(s) 325
MroXI GAANNNNTTC 3 cut(s) 2455, 3651, 4062
MscI TGGCCA 1 cut(s) 2145
MslI CAYNNNNRTG 3 cut(s) 209, 221, 901
Msp20I TGGCCA 1 cut(s) 2145
MspA1I CMGCKG 5 cut(s) 508, 2011, 3428, 3437, 4142
MspCI CTTAAG 2 cut(s) 1216, 1475
MspI CCGG 5 cut(s) 326, 1126, 2349, 3052, 3448
MunI CAATTG 1 cut(s) 3624
Mva1269I GAATGC 2 cut(s) 289, 3559
MvaI CCWGG 9 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4083, 4185, 4510
MwoI GCNNNNNNNGC 7 cut(s) 284, 817, 1848, 2062, 2560, 3431, 3434
NciI CCSGG 1 cut(s) 3053
NcoI CCATGG 2 cut(s) 633, 2960
NdeI CATATG 1 cut(s) 1373
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 6 cut(s) 894, 977, 2930, 3326, 3344, 4263
NsiI ATGCAT 3 cut(s) 524, 627, 3717
NspI RCATGY 9 cut(s) 220, 1345, 1390, 2383, 2554, 2578, 2818, 2931, 4420
OliI CACNNNNGTG 1 cut(s) 901
PaeI GCATGC 1 cut(s) 2818
PagI TCATGA 2 cut(s) 1876, 2508
PciI ACATGT 3 cut(s) 216, 2379, 2574
PciSI GCTCTTC 2 cut(s) 2595, 2732
PctI GAATGC 2 cut(s) 289, 3559
PdmI GAANNNNTTC 3 cut(s) 2455, 3651, 4062
PfoI TCCNGGA 3 cut(s) 2101, 2524, 4081
PleI GAGTC 5 cut(s) 113, 1084, 1096, 2898, 2950
PpsI GAGTC 5 cut(s) 113, 1084, 1096, 2898, 2950
Ppu21I YACGTR 2 cut(s) 834, 2642
PpuMI RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
PscI ACATGT 3 cut(s) 216, 2379, 2574
PsiI TTATAA 3 cut(s) 1502, 1835, 1959
Psp124BI GAGCTC 2 cut(s) 1561, 4569
Psp5II RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
Psp6I CCWGG 9 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4081, 4183, 4508
PspEI GGTNACC 1 cut(s) 3326
PspFI CCCAGC 1 cut(s) 3272
PspGI CCWGG 9 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4081, 4183, 4508
PspPPI RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
PsrI GAACNNNNNNTAC 2 cut(s) 3127, 3159
PstNI CAGNNNCTG 2 cut(s) 1013, 1046
PsuI RGATCY 5 cut(s) 862, 874, 2258, 3853, 3880
PvuII CAGCTG 2 cut(s) 3428, 3437
RsaI GTAC 6 cut(s) 605, 836, 2038, 2992, 3703, 3894
RsaNI GTAC 6 cut(s) 604, 835, 2037, 2991, 3702, 3893
RseI CAYNNNNRTG 3 cut(s) 209, 221, 901
SacI GAGCTC 2 cut(s) 1561, 4569
SapI GCTCTTC 2 cut(s) 2595, 2732
SchI GAGTC 5 cut(s) 113, 1085, 1097, 2899, 2950
SduI GDGCHC 8 cut(s) 833, 1561, 2222, 2392, 2647, 3372, 3867, 4569
SfaNI GCATC 5 cut(s) 145, 238, 1288, 3286, 3740
SfcI CTRYAG 3 cut(s) 1694, 2948, 4284
SmiMI CAYNNNNRTG 3 cut(s) 209, 221, 901
SmlI CTYRAG 5 cut(s) 1153, 1216, 1475, 1812, 2369
SmoI CTYRAG 5 cut(s) 1153, 1216, 1475, 1812, 2369
SpeI ACTAGT 1 cut(s) 686
SphI GCATGC 1 cut(s) 2818
SsiI CCGC 5 cut(s) 251, 506, 845, 2011, 4140
SspI AATATT 3 cut(s) 1066, 2197, 3010
SstI GAGCTC 2 cut(s) 1561, 4569
StyI CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 4006
TaaI ACNGT 4 cut(s) 1888, 1945, 3125, 4312
TaiI ACGT 4 cut(s) 836, 2644, 3145, 4561
TaqI TCGA 6 cut(s) 409, 1231, 1275, 1631, 1744, 2937
TatI WGTACW 2 cut(s) 2990, 3892
TauI GCSGC 1 cut(s) 848
TscAI CASTG 6 cut(s) 228, 402, 1654, 1950, 3114, 3223
TseFI GTSAC 6 cut(s) 894, 977, 2930, 3326, 3344, 4263
Tsp45I GTSAC 6 cut(s) 894, 977, 2930, 3326, 3344, 4263
TspGWI ACGGA 3 cut(s) 221, 2024, 2579
TspRI CASTG 6 cut(s) 228, 402, 1654, 1950, 3114, 3223
Vha464I CTTAAG 2 cut(s) 1216, 1475
VneI GTGCAC 3 cut(s) 2218, 2643, 3863
XagI CCTNNNNNAGG 2 cut(s) 149, 1812
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 9 cut(s) 220, 1345, 1390, 2383, 2554, 2578, 2818, 2931, 4420
XcmI CCANNNNNNNNNTGG 1 cut(s) 1755
XmaJI CCTAGG 1 cut(s) 3058
XmiI GTMKAC 1 cut(s) 2571
XmnI GAANNNNTTC 3 cut(s) 2455, 3651, 4062
Zsp2I ATGCAT 3 cut(s) 524, 627, 3717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.