Rmu_sc0020049.1_g000002

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020049.1
OG0004130
Physical Location & Seq
Reverse (-)
4281 .. 10018
5738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020049.1_g000002.1.cds

Sequence Viewer

Length: 4761 bp
atgggttgtaattcagatggtgggtcccaagtgtttaggggtgaagatgatgatgaagaatatgaggaggatggtaggggtagtcggtttcttgggtttatgtttggtaatgtggatgactcgggtgatcttgatgttgattaccttgatgaggatgcaaagaagcattttgctgcactttccgagaagcttggtcctgcgttcacggatatggacatgtcagtgaagttaccaaggacattaagcgatgcgatggagcaagattatgatgagaaggctgagaatgctgtgaattattttgacattgatgaggattttgagggtccggagattgaaggtgctactgaggaggaccatcttttgccgagagatgaatacctttctgctaaagtttcagtggataaaattcgagaagtggaacatgatgtggttgaaaattatgatgaggagagtgaacaggaaaaggaacaagaggtggttgaacaggatgttagaatttccccaccgctgccagttctatgcatagaagatggagaggtgatcctaagattctcagaaatctttggcactcatgtaaaggaggcagttaaaagaaaccataggtactctgtttgcaaaagtatgcataaatccatggatgttacagatattgttgaagaggatgaagaggcatttctcaaaggaactagtgaaggatttacagctttgaaagaagctgatggagtgaaacataacatctcagaattgaatgatgatgatttggaatttgcaaaatttcgtgttcacaaagaggctacctcatttgctgtgctggatgtaccaggaaagggcacgtacctcttggcggcaccaatgaaagaagatctagatgtggatctttgtgtggaaaggcagtcaccttcgtgtcctacattttaccctcttgatcaacaagactgggaagatggaattatttgggacaagtctcctgtaatgagtgacaatgctgttgagagttgtgaaatgtcaggacctgaccacacctcagttgatagtgaaacagaatctgatagtgggtcgcaaaatattcagttagagtcccaaaaagagtctgatgagaaaaggcatgattttatgctatttagccggtctagtctgttggagccttttggctcaagaaattcagcaggacctttatgtgttcctgtatcggaaagcagataccatccccaactcttaaggctagaatctcgatttgaagtggatgaccaggcaaatggtagaatgaagaatgtcgaccagaagcttcataagagagatgctgtgaggcaattcagcaagcttacctcacataacagagacatgctggaaggatcgtggttagaccagatcatatgggacccaaacatgcctattaggaagccaaagcttatccttgatcttgaagatgagcaaatgctctttgagattttggataacgaggatagtgaacatcttaagcttcattcaggggccacgattgtaactccccctctaaagtcaagcaatgaggattctttggatttgcccagtcatggagctcagttttgttggcgatatgtagctaatgacaagcactatgcaaacaggaaaatatcttatcaactacaatcgaattctaaaagacgcactgctcaaagcataaagatttatcactcacaacctgcacttcggatacagactatgaagctgaagttaagcaataaggaggttgctaattttcatcgaccaaaggctttatggtatccctgcgacgatgaaaaagctgtaaaagaactagggaagctgcctactcaaggaccaatgaaaattattataaagagcttgggtggcaaaggcagtaagcttcatgttgatcatgaggaaactgtcttttctgtcaaagcaaaagcttcaaaaaagctagattttaagtcatctgaaacagtgaggatgttttataaagggaaggaacttgaagatgataaatctctagctgctcaaaatgttcagcggaactctttgctttatctggtccgtacaaatatatatttgttgccaaggtcgcaaaaacttcctggtgagaataaatcgttgcgtcctcctggagcatttaagaagaaatctgacctttcagctaaagatggccatgtctttctagtagagtattgtgaggaaagacctttacttctgagcaatattggtatgggtgcaagattgtgcacttattatcaaaattcagccccagatgatcaaaatggatctttgttgcacaatgaaaacagcagctcaggtcatgtcatttcgctaaaccctgctgataaatcaccttttcttggagatataaaagccggttgctgtcagtcatctcttgagacaaacatgtatagagcacctcttttttctcataaggtgccgtcaactgattatctgttagttcgttctgcaaagggaaagctttcaattagacgcattgacaagcttaatgttgtagggcaacaggaacctctcatgaaggtaatgtctcctggaactaagaatctgaaaaattacatgcttaacaggctcctagtctacatgtgccgtgagttccgtgctgccaaagagcgccatgtccctccttgtatttgtgtagatgagttacgtgcacaatttccttacctatctgatccctttatcaaaaacaaagtgaaggaacttgtgaatttaccaaagggatcaagtggacattgggttaagaagagcaatttcaggattttctcagaggatgaattaagaaatatggtgaaaccagaagaggtgtgtgcctatgaaagcatgcaagctggtctttatcgcctcaaacatttaagaattactcaaacttatccttctgttatgtcatctgcaatgagtcatctccacgacgaaggtaatactctggctgctgcatgtcacatcgaaagggaactacagacgactccatggaatttgagttgcaattttgtagcctgtacaatgggaaaagaaaatattgagcgtttagaaatatctggccttggtgatccatctggccggggcctaggttttagttatgttcgcgctgctccaaaatcatcaatgtccaatgcagtgggaaagaaaaactgtgctactggtagaggacgttcagattctttcagcagggagaggtgtcaggaaatttgggaacagcaagttcatagtctttcagcagtaggcagtgttgagaatgagactgattcggaaggaaattatagtgatctggattcctttgctgggagtttagaaaatctgcttgatgcagaagaatgtgaaaaggggttagggggtgaccatgaatttgagtgtgacaaagaagacgacattaaagggctcgtaatgagaaggctcctgtccttgaatccagcagaggaaaatgaagatgaagcagctgaagcagctgagttatgccggttgcttatgggtgatgaaactgagaggaagaaaaagaaaacaacaagagttttggaggaagctaggctgcttccaggctcacgaacaagttttgcttttgagaatgcagatagggtaaagcaaaacattgttgcagcacaatttgatggttcctatactcctaaagagaatccaattggagacagcaaagtgatggaaaatcttcttaaaagaagcaagactggagaattagaagggatgagagagaatggtactacacctatgcataagaaactaaacgcatcaggaaatggtgtcaagatgtttggtgagaagaagccagtaagagagaattttgtctggagcctgtggtccattcctctgaactcatctagtcagtttcagcagaaaactacaacaaagaagctgataccaaagactgtaattgatgttgaaggttctgaggttgaaaaccttggtctgacctcaaaggttgttccattgacacttaaactgccattagtggaagctcacaaagagcaacatcatcagaaaagacatgagaagctgaatagcatgtattttcctattgaagcagcgaaaaagaaagcaagagatgacagaagattgggggaggagcaagagaaacgaagaattgaagagagtgccaggaggctgtatgacaaggaaattaggatggcaaaggagcaagaaagacgtgcagagctcaaaaaatatgaagcagccatcaaacgagagagagaggaagaactccagaaagtgaagaagaataaaatgatgcatagaagtccacagataaacaatgactatttagaggactcacggacaagaagatttggtaaaaggatgttaaaaagagatcagggggccaaaaggaggccaactgttgatttgggaagttatggtggaggttatgcctcaactactaagcgtcgtaaaggaggagaggttggtttggcaaacatcttggagcgcattgtagaatccctcaaagatcgaattgaaatctcgtatctttttctaaaaccagtatccaaaaaggaagctcctgattaccgggacgtcatagagcacccaatggatctgtcgacaatcaaggtgaaggttcggaatatggagtacaagagccgggagcaattcagacaggatgtgtggcagattgcccgtaatgcgcataaatataatgatgggcgtaacccggatatccctccacttgcagatgagcttttaaactcctgtgactatatgttggttgagaatgaagaaagcttgactgaagcggaagcaggcattgaatatagagatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

1586

Amino Acids

180.41

Weight (kDa)

5.67

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1835, 1959
AatII GACGTC 1 cut(s) 4515
Acc16I TGCGCA 1 cut(s) 4623
Acc36I ACCTGC 1 cut(s) 1690
AccB1I GGYRCC 2 cut(s) 847, 2410
AccI GTMKAC 3 cut(s) 1275, 2571, 4538
AccII CGCG 1 cut(s) 3078
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 4 cut(s) 506, 845, 2011, 4730
AclWI GGATC 8 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035, 4539
AcoI YGGCCR 2 cut(s) 2143, 3049
AcuI CTGAAG 3 cut(s) 1730, 3450, 4746
AcyI GRCGYC 1 cut(s) 4512
AfaI GTAC 7 cut(s) 605, 819, 836, 2038, 2992, 3703, 4571
AfiI CCNNNNNNNGG 8 cut(s) 151, 827, 844, 1553, 1814, 2333, 3273, 4326
AflII CTTAAG 2 cut(s) 1216, 1475
AflIII ACRYGT 3 cut(s) 216, 2379, 2574
AhlI ACTAGT 1 cut(s) 686
AjiI CACGTC 1 cut(s) 4148
AjnI CCWGG 7 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4097
AleI CACNNNNGTG 1 cut(s) 901
Alw21I GWGCWC 6 cut(s) 1561, 2222, 2392, 2647, 4158, 4524
Alw26I GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
Alw44I GTGCAC 2 cut(s) 2218, 2643
AlwI GGATC 8 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035, 4539
AlwNI CAGNNNCTG 2 cut(s) 1013, 1046
Ama87I CYCGRG 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 7 cut(s) 1491, 2143, 3031, 3049, 3055, 4317, 4328
ApaLI GTGCAC 2 cut(s) 2218, 2643
ArsI GACNNNNNNTTYG 2 cut(s) 3320, 3352
Asp700I GAANNNNTTC 2 cut(s) 2455, 3651
AspA2I CCTAGG 1 cut(s) 3058
AspLEI GCGC 4 cut(s) 2607, 3080, 4425, 4624
AsuC2I CCSGG 4 cut(s) 3053, 4508, 4580, 4649
AvaI CYCGRG 1 cut(s) 121
AvrII CCTAGG 1 cut(s) 3058
BaeGI GKGCMC 3 cut(s) 833, 2222, 2647
BalI TGGCCA 1 cut(s) 2145
BanI GGYRCC 2 cut(s) 847, 2410
BanII GRGCYC 3 cut(s) 1561, 3372, 4158
BbsI GAAGAC 1 cut(s) 3360
Bbv12I GWGCWC 6 cut(s) 1561, 2222, 2392, 2647, 4158, 4524
BceAI ACGGC 2 cut(s) 2398, 2565
BciT130I CCWGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4099
BciVI GTATCC 3 cut(s) 1686, 1773, 4492
BclI TGATCA 3 cut(s) 925, 1873, 2248
BcnI CCSGG 4 cut(s) 3053, 4508, 4580, 4649
BcoDI GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
BcuI ACTAGT 1 cut(s) 686
BfmI CTRYAG 1 cut(s) 2948
BfoI RGCGCY 1 cut(s) 2608
BfrI CTTAAG 2 cut(s) 1216, 1475
BfuAI ACCTGC 1 cut(s) 1690
BfuI GTATCC 3 cut(s) 1686, 1773, 4492
BglII AGATCT 1 cut(s) 862
BlnI CCTAGG 1 cut(s) 3058
BmeT110I CYCGRG 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 4148
BmrI ACTGGG 2 cut(s) 946, 1542
BmsI GCATC 6 cut(s) 145, 238, 1288, 3286, 3740, 4218
BmuI ACTGGG 2 cut(s) 946, 1542
BpiI GAAGAC 1 cut(s) 3360
BplI GAGNNNNNCTC 2 cut(s) 782, 814
BpmI CTGGAG 4 cut(s) 2124, 3693, 3811, 4187
Bpu10I CCTNAGC 1 cut(s) 2287
BpuEI CTTGAG 3 cut(s) 1138, 1797, 2390
BpuMI CCSGG 4 cut(s) 3053, 4508, 4580, 4649
BsaAI YACGTR 2 cut(s) 834, 2642
BsaBI GATNNNNATC 1 cut(s) 873
BsaHI GRCGYC 1 cut(s) 4512
BsaJI CCNNGG 8 cut(s) 233, 633, 2057, 2960, 3034, 3052, 3058, 3904
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 4383, 4413
Bsc4I CCNNNNNNNGG 8 cut(s) 151, 827, 844, 1553, 1814, 2333, 3273, 4326
Bse118I RCCGGY 3 cut(s) 1125, 2348, 3447
Bse1I ACTGG 7 cut(s) 512, 941, 1548, 3136, 3676, 3770, 4478
Bse3DI GCAATG 2 cut(s) 1531, 2892
Bse8I GATNNNNATC 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4099
BseDI CCNNGG 8 cut(s) 233, 633, 2057, 2960, 3034, 3052, 3058, 3904
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 8 cut(s) 151, 827, 844, 1553, 1814, 2333, 3273, 4326
BseMI GCAATG 2 cut(s) 1531, 2892
BseNI ACTGG 7 cut(s) 512, 941, 1548, 3136, 3676, 3770, 4478
BseRI GAGGAG 5 cut(s) 80, 362, 461, 4079, 4407
BseSI GKGCMC 3 cut(s) 833, 2222, 2647
BseYI CCCAGC 1 cut(s) 3272
BsgI GTGCAG 3 cut(s) 159, 1668, 4170
Bsh1236I CGCG 1 cut(s) 3078
BshFI GGCC 7 cut(s) 1493, 2145, 3033, 3051, 3057, 4319, 4330
BshNI GGYRCC 2 cut(s) 847, 2410
BsiHKAI GWGCWC 6 cut(s) 1561, 2222, 2392, 2647, 4158, 4524
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 8 cut(s) 326, 1126, 2349, 3052, 3448, 4507, 4579, 4649
BslFI GGGAC 6 cut(s) 10, 971, 1063, 1391, 2597, 4523
BslI CCNNNNNNNGG 8 cut(s) 151, 827, 844, 1553, 1814, 2333, 3273, 4326
BsmAI GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
BsmFI GGGAC 6 cut(s) 10, 971, 1063, 1391, 2597, 4523
BsmI GAATGC 2 cut(s) 289, 3559
BsnI GGCC 7 cut(s) 1493, 2145, 3033, 3051, 3057, 4319, 4330
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 8 cut(s) 833, 1561, 2222, 2392, 2647, 3372, 4158, 4524
Bsp13I TCCGGA 1 cut(s) 325
Bsp1407I TGTACA 1 cut(s) 2990
Bsp19I CCATGG 2 cut(s) 633, 2960
BspACI CCGC 4 cut(s) 506, 845, 2011, 4730
BspANI GGCC 7 cut(s) 1493, 2145, 3033, 3051, 3057, 4319, 4330
BspEI TCCGGA 1 cut(s) 325
BspFNI CGCG 1 cut(s) 3078
BspHI TCATGA 2 cut(s) 1876, 2508
BspMI ACCTGC 1 cut(s) 1690
BspPI GGATC 8 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035, 4539
BspQI GCTCTTC 1 cut(s) 2732
BspT107I GGYRCC 2 cut(s) 847, 2410
BspTI CTTAAG 2 cut(s) 1216, 1475
BsrDI GCAATG 2 cut(s) 1531, 2892
BsrFI RCCGGY 3 cut(s) 1125, 2348, 3447
BsrGI TGTACA 1 cut(s) 2990
BsrI ACTGG 7 cut(s) 512, 941, 1548, 3136, 3676, 3770, 4478
BssAI RCCGGY 3 cut(s) 1125, 2348, 3447
BssECI CCNNGG 8 cut(s) 233, 633, 2057, 2960, 3034, 3052, 3058, 3904
BssNI GRCGYC 1 cut(s) 4512
BssT1I CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 3904
Bst2UI CCWGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4099
Bst4CI ACNGT 5 cut(s) 1888, 1945, 3125, 3871, 4336
Bst6I CTCTTC 5 cut(s) 651, 660, 2732, 2787, 4083
BstACI GRCGYC 1 cut(s) 4512
BstAFI CTTAAG 2 cut(s) 1216, 1475
BstAUI TGTACA 1 cut(s) 2990
BstBAI YACGTR 2 cut(s) 834, 2642
BstC8I GCNNGC 4 cut(s) 1319, 2816, 2820, 4738
BstDSI CCRYGG 2 cut(s) 633, 2960
BstEII GGTNACC 1 cut(s) 3326
BstENI CCTNNNNNAGG 2 cut(s) 149, 1812
BstFNI CGCG 1 cut(s) 3078
BstH2I RGCGCY 1 cut(s) 2608
BstHHI GCGC 4 cut(s) 2607, 3080, 4425, 4624
BstMAI GTCTC 6 cut(s) 969, 1332, 2366, 2526, 3224, 3624
BstMWI GCNNNNNNNGC 7 cut(s) 284, 1848, 2062, 2560, 3431, 3434, 4619
BstNI CCWGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4099
BstNSI RCATGY 9 cut(s) 220, 1345, 1390, 2383, 2554, 2578, 2818, 2931, 4009
BstPI GGTNACC 1 cut(s) 3326
BstSFI CTRYAG 1 cut(s) 2948
BstSLI GKGCMC 3 cut(s) 833, 2222, 2647
BstUI CGCG 1 cut(s) 3078
BstV2I GAAGAC 1 cut(s) 3360
BstX2I RGATCY 4 cut(s) 862, 874, 2258, 4531
BstXI CCANNNNNNTGG 2 cut(s) 1256, 3109
BstYI RGATCY 4 cut(s) 862, 874, 2258, 4531
BsuI GTATCC 3 cut(s) 1686, 1773, 4492
BsuRI GGCC 7 cut(s) 1493, 2145, 3033, 3051, 3057, 4319, 4330
BtgI CCRYGG 2 cut(s) 633, 2960
BtgZI GCGATG 2 cut(s) 261, 266
BtrI CACGTC 1 cut(s) 4148
BtsI GCAGTG 3 cut(s) 1647, 3114, 3223
BtsIMutI CAGTG 6 cut(s) 228, 402, 1647, 1950, 3114, 3223
BveI ACCTGC 1 cut(s) 1690
Cac8I GCNNGC 4 cut(s) 1319, 2816, 2820, 4738
CaiI CAGNNNCTG 2 cut(s) 1013, 1046
CciI TCATGA 2 cut(s) 1876, 2508
CfoI GCGC 4 cut(s) 2607, 3080, 4425, 4624
Cfr10I RCCGGY 3 cut(s) 1125, 2348, 3447
CseI GACGC 4 cut(s) 1653, 2084, 2475, 4370
Csp6I GTAC 7 cut(s) 604, 818, 835, 2037, 2991, 3702, 4570
CviQI GTAC 7 cut(s) 604, 818, 835, 2037, 2991, 3702, 4570
DraI TTTAAA 1 cut(s) 4680
EaeI YGGCCR 2 cut(s) 2143, 3049
Eam1104I CTCTTC 5 cut(s) 651, 660, 2732, 2787, 4083
EarI CTCTTC 5 cut(s) 651, 660, 2732, 2787, 4083
Ecl136II GAGCTC 2 cut(s) 1559, 4156
Eco130I CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 3904
Eco24I GRGCYC 3 cut(s) 1561, 3372, 4158
Eco32I GATATC 1 cut(s) 4654
Eco53kI GAGCTC 2 cut(s) 1559, 4156
Eco57I CTGAAG 3 cut(s) 1730, 3450, 4746
Eco88I CYCGRG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 3326
EcoICRI GAGCTC 2 cut(s) 1559, 4156
EcoNI CCTNNNNNAGG 2 cut(s) 149, 1812
EcoO109I RGGNCCY 5 cut(s) 24, 1010, 1169, 1378, 3055
EcoO65I GGTNACC 1 cut(s) 3326
EcoRI GAATTC 1 cut(s) 1633
EcoRII CCWGG 7 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4097
EcoRV GATATC 1 cut(s) 4654
EcoT14I CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 3904
EcoT22I ATGCAT 4 cut(s) 524, 627, 3717, 4233
EcoT38I GRGCYC 3 cut(s) 1561, 3372, 4158
ErhI CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 3904
FalI AAGNNNNNCTT 4 cut(s) 2811, 2843, 3529, 3561
FaqI GGGAC 6 cut(s) 10, 971, 1063, 1391, 2597, 4523
FauNDI CATATG 1 cut(s) 1373
FbaI TGATCA 3 cut(s) 925, 1873, 2248
FblI GTMKAC 3 cut(s) 1275, 2571, 4538
FriOI GRGCYC 3 cut(s) 1561, 3372, 4158
FspAI RTGCGCAY 1 cut(s) 4623
FspI TGCGCA 1 cut(s) 4623
GlaI GCGC 4 cut(s) 2606, 3079, 4424, 4623
GsaI CCCAGC 1 cut(s) 3276
GsuI CTGGAG 4 cut(s) 2124, 3693, 3811, 4187
HaeII RGCGCY 1 cut(s) 2608
HaeIII GGCC 7 cut(s) 1493, 2145, 3033, 3051, 3057, 4319, 4330
HapII CCGG 8 cut(s) 326, 1126, 2349, 3052, 3448, 4507, 4579, 4649
HgaI GACGC 4 cut(s) 1653, 2084, 2475, 4370
HhaI GCGC 4 cut(s) 2607, 3080, 4425, 4624
Hin1I GRCGYC 1 cut(s) 4512
Hin6I GCGC 4 cut(s) 2605, 3078, 4423, 4622
HinP1I GCGC 4 cut(s) 2605, 3078, 4423, 4622
HincII GTYRAC 3 cut(s) 1276, 2418, 4539
HindII GTYRAC 3 cut(s) 1276, 2418, 4539
HpaII CCGG 8 cut(s) 326, 1126, 2349, 3052, 3448, 4507, 4579, 4649
Hpy99I CGWCG 3 cut(s) 1775, 2906, 4386
HpyCH4III ACNGT 5 cut(s) 1888, 1945, 3125, 3871, 4336
HpyCH4IV ACGT 5 cut(s) 833, 2641, 3142, 4147, 4512
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 1848, 2062, 2560, 3431, 3434, 4619
HpySE526I ACGT 5 cut(s) 833, 2641, 3142, 4147, 4512
Hsp92I GRCGYC 1 cut(s) 4512
HspAI GCGC 4 cut(s) 2605, 3078, 4423, 4622
KflI GGGWCCC 2 cut(s) 24, 1378
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 3 cut(s) 925, 1873, 2248
LguI GCTCTTC 1 cut(s) 2732
LweI GCATC 6 cut(s) 145, 238, 1288, 3286, 3740, 4218
MaeII ACGT 5 cut(s) 833, 2641, 3142, 4147, 4512
MfeI CAATTG 1 cut(s) 3624
MflI RGATCY 4 cut(s) 862, 874, 2258, 4531
MhlI GDGCHC 8 cut(s) 833, 1561, 2222, 2392, 2647, 3372, 4158, 4524
MlsI TGGCCA 1 cut(s) 2145
MluNI TGGCCA 1 cut(s) 2145
MlyI GAGTC 6 cut(s) 113, 1085, 1097, 2899, 2950, 4262
MmeI TCCRAC 1 cut(s) 1119
Mox20I TGGCCA 1 cut(s) 2145
Mph1103I ATGCAT 4 cut(s) 524, 627, 3717, 4233
MroI TCCGGA 1 cut(s) 325
MroXI GAANNNNTTC 2 cut(s) 2455, 3651
MscI TGGCCA 1 cut(s) 2145
MslI CAYNNNNRTG 3 cut(s) 209, 221, 901
Msp20I TGGCCA 1 cut(s) 2145
MspA1I CMGCKG 4 cut(s) 508, 2011, 3428, 3437
MspCI CTTAAG 2 cut(s) 1216, 1475
MspI CCGG 8 cut(s) 326, 1126, 2349, 3052, 3448, 4507, 4579, 4649
MunI CAATTG 1 cut(s) 3624
Mva1269I GAATGC 2 cut(s) 289, 3559
MvaI CCWGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3525, 4099
MvnI CGCG 1 cut(s) 3078
MwoI GCNNNNNNNGC 7 cut(s) 284, 1848, 2062, 2560, 3431, 3434, 4619
NciI CCSGG 4 cut(s) 3053, 4508, 4580, 4649
NcoI CCATGG 2 cut(s) 633, 2960
NdeI CATATG 1 cut(s) 1373
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 6 cut(s) 894, 977, 2930, 3326, 3344, 4688
NsbI TGCGCA 1 cut(s) 4623
NsiI ATGCAT 4 cut(s) 524, 627, 3717, 4233
NspI RCATGY 9 cut(s) 220, 1345, 1390, 2383, 2554, 2578, 2818, 2931, 4009
OliI CACNNNNGTG 1 cut(s) 901
PaeI GCATGC 1 cut(s) 2818
PagI TCATGA 2 cut(s) 1876, 2508
PciI ACATGT 3 cut(s) 216, 2379, 2574
PciSI GCTCTTC 1 cut(s) 2732
PctI GAATGC 2 cut(s) 289, 3559
PdmI GAANNNNTTC 2 cut(s) 2455, 3651
PfoI TCCNGGA 2 cut(s) 2101, 2524
PleI GAGTC 6 cut(s) 113, 1084, 1096, 2898, 2950, 4262
PpsI GAGTC 6 cut(s) 113, 1084, 1096, 2898, 2950, 4262
Ppu21I YACGTR 2 cut(s) 834, 2642
PpuMI RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
PscI ACATGT 3 cut(s) 216, 2379, 2574
PsiI TTATAA 2 cut(s) 1835, 1959
Psp124BI GAGCTC 2 cut(s) 1561, 4158
Psp5II RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
Psp6I CCWGG 7 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4097
PspEI GGTNACC 1 cut(s) 3326
PspFI CCCAGC 1 cut(s) 3272
PspGI CCWGG 7 cut(s) 820, 1248, 2074, 2101, 2524, 3523, 4097
PspPPI RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
PsrI GAACNNNNNNTAC 2 cut(s) 3127, 3159
PstNI CAGNNNCTG 2 cut(s) 1013, 1046
PsuI RGATCY 4 cut(s) 862, 874, 2258, 4531
PvuII CAGCTG 2 cut(s) 3428, 3437
RsaI GTAC 7 cut(s) 605, 819, 836, 2038, 2992, 3703, 4571
RsaNI GTAC 7 cut(s) 604, 818, 835, 2037, 2991, 3702, 4570
RseI CAYNNNNRTG 3 cut(s) 209, 221, 901
SacI GAGCTC 2 cut(s) 1561, 4158
SalI GTCGAC 2 cut(s) 1274, 4537
SapI GCTCTTC 1 cut(s) 2732
SchI GAGTC 6 cut(s) 113, 1085, 1097, 2899, 2950, 4262
SduI GDGCHC 8 cut(s) 833, 1561, 2222, 2392, 2647, 3372, 4158, 4524
SfaNI GCATC 6 cut(s) 145, 238, 1288, 3286, 3740, 4218
SfcI CTRYAG 1 cut(s) 2948
SmiMI CAYNNNNRTG 3 cut(s) 209, 221, 901
SmlI CTYRAG 5 cut(s) 1153, 1216, 1475, 1812, 2369
SmoI CTYRAG 5 cut(s) 1153, 1216, 1475, 1812, 2369
SpeI ACTAGT 1 cut(s) 686
SphI GCATGC 1 cut(s) 2818
SsiI CCGC 4 cut(s) 506, 845, 2011, 4730
SspI AATATT 3 cut(s) 1066, 2197, 3010
SstI GAGCTC 2 cut(s) 1561, 4158
StyI CCWWGG 7 cut(s) 233, 633, 2057, 2960, 3034, 3058, 3904
TaaI ACNGT 5 cut(s) 1888, 1945, 3125, 3871, 4336
TaiI ACGT 5 cut(s) 836, 2644, 3145, 4150, 4515
TaqI TCGA 8 cut(s) 409, 1231, 1275, 1631, 1744, 2937, 4447, 4538
TatI WGTACW 2 cut(s) 2990, 4569
TauI GCSGC 1 cut(s) 848
TscAI CASTG 6 cut(s) 228, 402, 1654, 1950, 3114, 3223
TseFI GTSAC 6 cut(s) 894, 977, 2930, 3326, 3344, 4688
Tsp45I GTSAC 6 cut(s) 894, 977, 2930, 3326, 3344, 4688
TspGWI ACGGA 4 cut(s) 221, 2024, 2579, 4288
TspRI CASTG 6 cut(s) 228, 402, 1654, 1950, 3114, 3223
Vha464I CTTAAG 2 cut(s) 1216, 1475
VneI GTGCAC 2 cut(s) 2218, 2643
XagI CCTNNNNNAGG 2 cut(s) 149, 1812
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 9 cut(s) 220, 1345, 1390, 2383, 2554, 2578, 2818, 2931, 4009
XcmI CCANNNNNNNNNTGG 1 cut(s) 1755
XmaJI CCTAGG 1 cut(s) 3058
XmiI GTMKAC 3 cut(s) 1275, 2571, 4538
XmnI GAANNNNTTC 2 cut(s) 2455, 3651
ZraI GACGTC 1 cut(s) 4513
Zsp2I ATGCAT 4 cut(s) 524, 627, 3717, 4233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.