Rorug05G0009500

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004130
Physical Location & Seq
Reverse (-)
530609 .. 534681
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0009500.1

Sequence Viewer

Length: 1023 bp
ATGAAGGGTCTCTTCAAGTCTAAGCCCCGCACGCCGGCCGACGTCGTCCGCCAGACCCGCGATCTCCTCATCTATGCTCAGCGCAGCCCCGATTCCCGCGAGAGCAAGCGCGAGGAAAAGATGGCAGAGCTTTGTAAAAACATTAGGGAGTTGAAGTGCATTCTCTATGGCAATAGTGAGTCAGAGCCTGTTTCGGAAGCTTGTGTGCAATTGACACAGGAGTTTTTCAGGGAGGACACGCTTCGACTTCTAATCATGTGTGTTCCGAAATTAAACTTGGAGGCAAGGAAAGATGCCACTCAAGTTGTTGCCAATCTACAAAGGCAGCAGGTTCACTCCAAGTTGATTGCATCCGATTACTTGGAAGCAAACATTGATATAATGGATGTTTTGATCCAAGGGTACGGAGATACAGATATGGCTTTACATTATGGTGCAATGCTGAGAGAGTGCATACGCCACCAAAGCGTTGCAAGATATGTTTTGGAATCTCAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTCGATATTGCTGCAGATGCTGCTGCGACTTTTAAGGAACTCATGACAAGGCATAAATCTACAGTAGCAGATTTTTTATCCAAGAATTATGACTGGTTCTTTGCGGAGTATAACTCAAAGCTGCTGGAATCCTCTAATTACATTACCAGACGACAAGCTGTCAAGCTGTTAGGAGATATATTGCTGGATCGGTCAAATTCAGCTGTAATGACTCGATATGTGAGCTCAAGAGACAATTTGAGGATCCTTATGAATCTTCTCAGAGAGTCAAGCAAGAGCATCCAGATCGAAGCATTTCATGTTTTTAAGCTATTTGCTGCCAACCAAAATAAACCTGCCGACATCGTGGGCATACTTGTTGCAAATAAAAGCAAACTTCTACGGCTGTTTGCTGATTTTAAAATTGATAAAGAGGATGAACAATTTGAGGCAGACAAAGCTCAAGTAGTAAGAGAGATTGCTGCCTTGGAACTGAAAGAACTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

340

Amino Acids

39.19

Weight (kDa)

8.14

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo25 PF08569 4 - 335 1.1e-132 Mo25-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
Acc36I ACCTGC 2 cut(s) 319, 877
AccII CGCG 3 cut(s) 60, 99, 111
AciI CCGC 5 cut(s) 28, 49, 58, 97, 638
AclWI GGATC 4 cut(s) 388, 729, 772, 785
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 2 cut(s) 532, 730
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 2 cut(s) 16, 154
AhdI GACNNNNNGTC 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
Alw21I GWGCWC 1 cut(s) 761
Alw26I GTCTC 2 cut(s) 14, 759
AlwI GGATC 4 cut(s) 388, 729, 772, 785
AlwNI CAGNNNCTG 2 cut(s) 188, 554
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 8 cut(s) 84, 325, 545, 554, 557, 655, 851, 995
ApoI RAATTY 2 cut(s) 532, 730
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
Asp700I GAANNNNTTC 2 cut(s) 506, 828
AspLEI GCGC 2 cut(s) 84, 111
BamHI GGATCC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 761
BbvI GCAGC 8 cut(s) 96, 337, 532, 541, 544, 642, 838, 982
BccI CCATC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 932
BcgI CGANNNNNNTGC 4 cut(s) 527, 561, 802, 836
BcoDI GTCTC 2 cut(s) 14, 759
BfmI CTRYAG 2 cut(s) 546, 594
BfuAI ACCTGC 2 cut(s) 319, 877
BisI GCNGC 8 cut(s) 85, 326, 546, 555, 558, 656, 852, 996
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 8 cut(s) 86, 327, 547, 556, 559, 657, 853, 997
BmeRI GACNNNNNGTC 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 779
BmsI GCATC 4 cut(s) 283, 359, 541, 822
BplI GAGNNNNNCTC 2 cut(s) 632, 664
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 3 cut(s) 285, 745, 960
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 397, 999
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 397, 999
BseGI GGATG 4 cut(s) 350, 391, 813, 955
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 3 cut(s) 92, 434, 808
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 8 cut(s) 96, 337, 532, 541, 544, 642, 838, 982
Bsh1236I CGCG 3 cut(s) 60, 99, 111
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 761
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 14, 759
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 761
Bsp143I GATC 5 cut(s) 61, 393, 721, 777, 819
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 5 cut(s) 28, 49, 58, 97, 638
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 91, 435, 807
BspFNI CGCG 3 cut(s) 60, 99, 111
BspHI TCATGA 2 cut(s) 576, 1019
BspLI GGNNCC 1 cut(s) 779
BspMAI CTGCAG 1 cut(s) 550
BspMI ACCTGC 2 cut(s) 319, 877
BspPI GGATC 4 cut(s) 388, 729, 772, 785
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 397, 999
BssMI GATC 5 cut(s) 61, 393, 721, 777, 819
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 2 cut(s) 397, 999
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 3 cut(s) 32, 36, 107
BstDEI CTNAG 4 cut(s) 21, 78, 443, 794
BstF5I GGATG 4 cut(s) 350, 391, 813, 955
BstFNI CGCG 3 cut(s) 60, 99, 111
BstHHI GCGC 2 cut(s) 84, 111
BstKTI GATC 5 cut(s) 64, 396, 724, 780, 822
BstMAI GTCTC 2 cut(s) 14, 759
BstMBI GATC 5 cut(s) 61, 393, 721, 777, 819
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 6 cut(s) 31, 57, 465, 551, 554, 971
BstSFI CTRYAG 2 cut(s) 546, 594
BstUI CGCG 3 cut(s) 60, 99, 111
BstV1I GCAGC 8 cut(s) 96, 337, 532, 541, 544, 642, 838, 982
BstX2I RGATCY 1 cut(s) 777
BstYI RGATCY 1 cut(s) 777
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 4 cut(s) 350, 391, 813, 955
BveI ACCTGC 2 cut(s) 319, 877
Cac8I GCNNGC 3 cut(s) 32, 36, 107
CaiI CAGNNNCTG 2 cut(s) 188, 554
CciI TCATGA 2 cut(s) 576, 1019
CfoI GCGC 2 cut(s) 84, 111
Cfr10I RCCGGY 1 cut(s) 34
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 5 cut(s) 256, 499, 577, 833, 1020
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 4 cut(s) 21, 78, 443, 794
DpnI GATC 5 cut(s) 63, 395, 723, 779, 821
DpnII GATC 5 cut(s) 61, 393, 721, 777, 819
DraI TTTAAA 1 cut(s) 934
DriI GACNNNNNGTC 1 cut(s) 692
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 17
Eam1105I GACNNNNNGTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 17
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 759
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 397, 999
Eco24I GRGCYC 1 cut(s) 761
Eco31I GGTCTC 1 cut(s) 14
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 759
EcoICRI GAGCTC 1 cut(s) 759
EcoT14I CCWWGG 2 cut(s) 397, 999
EcoT38I GRGCYC 1 cut(s) 761
ErhI CCWWGG 2 cut(s) 397, 999
FaeI CATG 5 cut(s) 259, 502, 580, 836, 1023
FalI AAGNNNNNCTT 3 cut(s) 28, 494, 526
FatI CATG 5 cut(s) 255, 498, 576, 832, 1019
FauI CCCGC 3 cut(s) 35, 65, 104
Fnu4HI GCNGC 8 cut(s) 85, 326, 546, 555, 558, 656, 852, 996
FokI GGATG 4 cut(s) 337, 398, 800, 962
FriOI GRGCYC 1 cut(s) 761
Fsp4HI GCNGC 8 cut(s) 85, 326, 546, 555, 558, 656, 852, 996
GlaI GCGC 2 cut(s) 83, 110
GluI GCNGC 8 cut(s) 85, 326, 546, 555, 558, 656, 852, 996
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 35
HhaI GCGC 2 cut(s) 84, 111
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 5 cut(s) 259, 502, 580, 836, 1023
Hin6I GCGC 2 cut(s) 82, 109
HinP1I GCGC 2 cut(s) 82, 109
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 7 cut(s) 92, 179, 488, 662, 745, 787, 800
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 5 cut(s) 184, 196, 267, 355, 797
Hpy188III TCNNGA 4 cut(s) 577, 762, 817, 1020
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 2 cut(s) 44, 47
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 8 cut(s) 159, 208, 350, 437, 453, 473, 548, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 57, 465, 551, 554, 971
HpyF3I CTNAG 4 cut(s) 21, 78, 443, 794
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 5 cut(s) 259, 502, 580, 836, 1023
HspAI GCGC 2 cut(s) 82, 109
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Kzo9I GATC 5 cut(s) 61, 393, 721, 777, 819
Lsp1109I GCAGC 8 cut(s) 96, 337, 532, 541, 544, 642, 838, 982
LweI GCATC 4 cut(s) 283, 359, 541, 822
MaeII ACGT 1 cut(s) 42
MalI GATC 5 cut(s) 63, 395, 723, 779, 821
MboI GATC 5 cut(s) 61, 393, 721, 777, 819
MboII GAAGA 3 cut(s) 4, 514, 782
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 1 cut(s) 777
MhlI GDGCHC 1 cut(s) 761
MluCI AATT 9 cut(s) 209, 269, 532, 619, 670, 730, 769, 936, 956
MlyI GAGTC 3 cut(s) 188, 739, 809
MnlI CCTC 8 cut(s) 77, 106, 226, 274, 676, 768, 940, 955
MroNI GCCGGC 1 cut(s) 34
MroXI GAANNNNTTC 2 cut(s) 506, 828
MseI TTAA 4 cut(s) 272, 567, 840, 933
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 1 cut(s) 35
MunI CAATTG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 159
MvnI CGCG 3 cut(s) 60, 99, 111
MwoI GCNNNNNNNGC 6 cut(s) 31, 57, 465, 551, 554, 971
NaeI GCCGGC 1 cut(s) 36
NdeII GATC 5 cut(s) 61, 393, 721, 777, 819
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 5 cut(s) 259, 502, 580, 836, 1023
NlaIV GGNNCC 1 cut(s) 779
PagI TCATGA 2 cut(s) 576, 1019
PctI GAATGC 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 36
PdmI GAANNNNTTC 2 cut(s) 506, 828
PfeI GAWTC 4 cut(s) 92, 488, 662, 787
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 8 cut(s) 86, 327, 547, 556, 559, 657, 853, 997
PleI GAGTC 3 cut(s) 187, 739, 808
PpsI GAGTC 3 cut(s) 187, 739, 808
Psp124BI GAGCTC 1 cut(s) 761
PspN4I GGNNCC 1 cut(s) 779
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 2 cut(s) 188, 554
PsuI RGATCY 1 cut(s) 777
PsyI GACNNNGTC 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 761
SaqAI TTAA 4 cut(s) 272, 567, 840, 933
SatI GCNGC 8 cut(s) 85, 326, 546, 555, 558, 656, 852, 996
Sau3AI GATC 5 cut(s) 61, 393, 721, 777, 819
SchI GAGTC 3 cut(s) 188, 739, 809
SduI GDGCHC 1 cut(s) 761
SfaNI GCATC 4 cut(s) 283, 359, 541, 822
SfcI CTRYAG 2 cut(s) 546, 594
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 3 cut(s) 300, 760, 975
SmoI CTYRAG 3 cut(s) 300, 760, 975
Sse9I AATT 9 cut(s) 209, 269, 532, 619, 670, 730, 769, 936, 956
SsiI CCGC 5 cut(s) 28, 49, 58, 97, 638
SstI GAGCTC 1 cut(s) 761
StyI CCWWGG 2 cut(s) 397, 999
TaaI ACNGT 1 cut(s) 598
TaiI ACGT 1 cut(s) 45
TaqI TCGA 4 cut(s) 244, 537, 748, 822
TaqII GACCGA 1 cut(s) 714
TasI AATT 9 cut(s) 209, 269, 532, 619, 670, 730, 769, 936, 956
TfiI GAWTC 4 cut(s) 92, 488, 662, 787
Tru1I TTAA 4 cut(s) 272, 567, 840, 933
Tru9I TTAA 4 cut(s) 272, 567, 840, 933
TseI GCWGC 8 cut(s) 84, 325, 545, 554, 557, 655, 851, 995
TspDTI ATGAA 5 cut(s) 17, 515, 800, 821, 966
TspGWI ACGGA 1 cut(s) 420
Tth111I GACNNNGTC 1 cut(s) 44
XapI RAATTY 2 cut(s) 532, 730
XmnI GAANNNNTTC 2 cut(s) 506, 828
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.