Transcription initiation factor TFIID subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32750 AT3G19040 AT3G19040 |
| fragaria_vesca | FvH4_1g29900 FvH4_1g29900 FvH4_1g29900 FvH4_3g05980 FvH4_3g05980 FvH4_3g05980 |
| malus_domestica | MD04G1047300.v1.1 |
| prunus_persica | Prupe.1G559000_v2.0.a1 |
| pyrus_communis | pycom04g04140 |
| rosa_chinensis | RchiOBHm_Chr3g0492481 RchiOBHm_Chr5g0013481 |
| rosa_laevigata | RLG00000022765 RLG00000029713 RLG00000032019 |
| rosa_multiflora | Rmu_sc0000971.1_g000001 Rmu_sc0020049.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00063080 Rroxscaffold_6G00392250 |
| rosa_rugosa | Rorug01G0101000 Rorug01G0101100 Rorug05G0009500 |
| rosa_samantha | Rh3AG304400 Rh3BG340200 Rh3CG337500 Rh3DG339500 Rh5BG101100 Rh5CG112900 Rh5DG099700 |
| rosa_wichuraiana | Rw3G026820 Rw5G009130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2000 |
| AarI | CACCTGC | 1 cut(s) | 872 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1341, 4205 |
| Acc36I | ACCTGC | 4 cut(s) | 872, 1855, 3696, 3840 |
| AccB1I | GGYRCC | 3 cut(s) | 2575, 3783, 5264 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1718 |
| AccBSI | CCGCTC | 1 cut(s) | 4519 |
| AccI | GTMKAC | 2 cut(s) | 2736, 4553 |
| AccII | CGCG | 1 cut(s) | 4043 |
| AccIII | TCCGGA | 2 cut(s) | 1172, 2919 |
| AciI | CCGC | 6 cut(s) | 545, 1337, 1738, 2260, 2434, 4519 |
| AcoI | YGGCCR | 3 cut(s) | 85, 4520, 4524 |
| AcuI | CTGAAG | 9 cut(s) | 617, 2873, 3024, 3524, 3660, 3852, 4440, 5694, 5700 |
| AcvI | CACGTG | 1 cut(s) | 3518 |
| AcyI | GRCGYC | 1 cut(s) | 3784 |
| AfaI | GTAC | 8 cut(s) | 735, 770, 2203, 2549, 3163, 4608, 5323, 5519 |
| AfeI | AGCGCT | 1 cut(s) | 3277 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1217, 1718, 2498, 3672, 3793, 4265, 4544, 4754, 5274 |
| AflII | CTTAAG | 2 cut(s) | 1640, 4559 |
| AflIII | ACRYGT | 3 cut(s) | 2311, 2458, 2544 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2881, 2913 |
| AleI | CACNNNNGTG | 1 cut(s) | 1066 |
| Alw21I | GWGCWC | 4 cut(s) | 2557, 4865, 4878, 5106 |
| Alw26I | GTCTC | 9 cut(s) | 520, 753, 1497, 2691, 3071, 4032, 4191, 4356, 4496 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3338 |
| Ama87I | CYCGRG | 1 cut(s) | 124 |
| Aor13HI | TCCGGA | 2 cut(s) | 1172, 2919 |
| Aor51HI | AGCGCT | 1 cut(s) | 3277 |
| AseI | ATTAAT | 1 cut(s) | 1194 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 630, 2620, 3334, 4059, 4476 |
| AspA2I | CCTAGG | 1 cut(s) | 3229 |
| AspLEI | GCGC | 6 cut(s) | 2772, 2913, 3278, 3786, 4117, 5472 |
| AsuC2I | CCSGG | 1 cut(s) | 5528 |
| AvaI | CYCGRG | 1 cut(s) | 124 |
| AvaII | GGWCC | 7 cut(s) | 326, 355, 1175, 1334, 1543, 1982, 3929 |
| AvrII | CCTAGG | 1 cut(s) | 3229 |
| BaeGI | GKGCMC | 1 cut(s) | 2230 |
| BamHI | GGATCC | 2 cut(s) | 196, 1267 |
| BanI | GGYRCC | 3 cut(s) | 2575, 3783, 5264 |
| BanII | GRGCYC | 1 cut(s) | 5106 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2105, 2137 |
| BauI | CACGAG | 2 cut(s) | 3369, 4866 |
| BbrPI | CACGTG | 1 cut(s) | 3518 |
| BbsI | GAAGAC | 3 cut(s) | 693, 828, 5180 |
| Bbv12I | GWGCWC | 4 cut(s) | 2557, 4865, 4878, 5106 |
| BbvCI | CCTCAGC | 1 cut(s) | 2043 |
| BceAI | ACGGC | 4 cut(s) | 2563, 2730, 4658, 5201 |
| BciVI | GTATCC | 2 cut(s) | 1938, 5612 |
| BclI | TGATCA | 3 cut(s) | 616, 1090, 2413 |
| BcnI | CCSGG | 1 cut(s) | 5528 |
| BcoDI | GTCTC | 9 cut(s) | 520, 753, 1497, 2691, 3071, 4032, 4191, 4356, 4496 |
| BfaI | CTAG | 8 cut(s) | 2087, 2732, 3230, 3423, 3659, 3719, 4838, 4974 |
| BfmI | CTRYAG | 8 cut(s) | 387, 1859, 2649, 3119, 3545, 3609, 4632, 5697 |
| BfoI | RGCGCY | 4 cut(s) | 2773, 3279, 3787, 5473 |
| BfrI | CTTAAG | 2 cut(s) | 1640, 4559 |
| BfuAI | ACCTGC | 4 cut(s) | 872, 1855, 3696, 3840 |
| BfuI | GTATCC | 2 cut(s) | 1938, 5612 |
| BglII | AGATCT | 4 cut(s) | 1830, 4300, 4726, 5631 |
| BlnI | CCTAGG | 1 cut(s) | 3229 |
| Bme18I | GGWCC | 7 cut(s) | 326, 355, 1175, 1334, 1543, 1982, 3929 |
| BmeT110I | CYCGRG | 1 cut(s) | 124 |
| BmrI | ACTGGG | 6 cut(s) | 1111, 1227, 1341, 3176, 4439, 4554 |
| BmuI | ACTGGG | 6 cut(s) | 1111, 1227, 1341, 3176, 4439, 4554 |
| BpiI | GAAGAC | 3 cut(s) | 693, 828, 5180 |
| BpmI | CTGGAG | 5 cut(s) | 2289, 4281, 4325, 4518, 5430 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2043, 3798, 5105 |
| BpuEI | CTTGAG | 6 cut(s) | 1303, 1436, 1803, 1962, 2993, 3160 |
| BpuMI | CCSGG | 1 cut(s) | 5528 |
| Bsa29I | ATCGAT | 1 cut(s) | 797 |
| BsaAI | YACGTR | 3 cut(s) | 413, 3449, 3518 |
| BsaBI | GATNNNNATC | 3 cut(s) | 803, 4839, 5561 |
| BsaHI | GRCGYC | 1 cut(s) | 3784 |
| BsaI | GGTCTC | 1 cut(s) | 753 |
| BsaJI | CCNNGG | 7 cut(s) | 2222, 3131, 3229, 3792, 4404, 4584, 5475 |
| BsaWI | WCCGGW | 3 cut(s) | 1172, 2919, 3326 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2669, 2699, 4146, 4176, 4852, 4882, 5331, 5361 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1217, 1718, 2498, 3672, 3793, 4265, 4544, 4754, 5274 |
| Bse118I | RCCGGY | 2 cut(s) | 74, 4522 |
| Bse3DI | GCAATG | 7 cut(s) | 118, 665, 930, 1696, 2365, 3063, 3447 |
| Bse8I | GATNNNNATC | 3 cut(s) | 803, 4839, 5561 |
| BseAI | TCCGGA | 2 cut(s) | 1172, 2919 |
| BseCI | ATCGAT | 1 cut(s) | 797 |
| BseDI | CCNNGG | 7 cut(s) | 2222, 3131, 3229, 3792, 4404, 4584, 5475 |
| BseJI | GATNNNNATC | 3 cut(s) | 803, 4839, 5561 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1217, 1718, 2498, 3672, 3793, 4265, 4544, 4754, 5274 |
| BseMI | GCAATG | 7 cut(s) | 118, 665, 930, 1696, 2365, 3063, 3447 |
| BseSI | GKGCMC | 1 cut(s) | 2230 |
| BseX3I | CGGCCG | 1 cut(s) | 4520 |
| BseYI | CCCAGC | 2 cut(s) | 3671, 4316 |
| BsgI | GTGCAG | 6 cut(s) | 162, 906, 1833, 2814, 3351, 4410 |
| Bsh1236I | CGCG | 1 cut(s) | 4043 |
| Bsh1285I | CGRYCG | 2 cut(s) | 4523, 5590 |
| BshNI | GGYRCC | 3 cut(s) | 2575, 3783, 5264 |
| BshVI | ATCGAT | 1 cut(s) | 797 |
| BsiEI | CGRYCG | 2 cut(s) | 4523, 5590 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2557, 4865, 4878, 5106 |
| BsiHKCI | CYCGRG | 1 cut(s) | 124 |
| BsiSI | CCGG | 6 cut(s) | 75, 1173, 2920, 3327, 4523, 5527 |
| BslFI | GGGAC | 9 cut(s) | 141, 339, 1329, 1473, 1556, 1709, 2469, 4803, 5057 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1217, 1718, 2498, 3672, 3793, 4265, 4544, 4754, 5274 |
| BsmAI | GTCTC | 9 cut(s) | 520, 753, 1497, 2691, 3071, 4032, 4191, 4356, 4496 |
| BsmBI | CGTCTC | 2 cut(s) | 3071, 4032 |
| BsmFI | GGGAC | 9 cut(s) | 141, 339, 1329, 1473, 1556, 1709, 2469, 4803, 5057 |
| BsmI | GAATGC | 4 cut(s) | 726, 836, 3967, 5250 |
| Bso31I | GGTCTC | 1 cut(s) | 753 |
| BsoBI | CYCGRG | 1 cut(s) | 124 |
| Bsp1286I | GDGCHC | 5 cut(s) | 2230, 2557, 4865, 4878, 5106 |
| Bsp13I | TCCGGA | 2 cut(s) | 1172, 2919 |
| Bsp1407I | TGTACA | 2 cut(s) | 2547, 3161 |
| Bsp19I | CCATGG | 2 cut(s) | 3131, 5475 |
| BspACI | CCGC | 6 cut(s) | 545, 1337, 1738, 2260, 2434, 4519 |
| BspDI | ATCGAT | 1 cut(s) | 797 |
| BspEI | TCCGGA | 2 cut(s) | 1172, 2919 |
| BspFNI | CGCG | 1 cut(s) | 4043 |
| BspMAI | CTGCAG | 2 cut(s) | 391, 3549 |
| BspMI | ACCTGC | 4 cut(s) | 872, 1855, 3696, 3840 |
| BspQI | GCTCTTC | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 3 cut(s) | 2575, 3783, 5264 |
| BspTI | CTTAAG | 2 cut(s) | 1640, 4559 |
| BspTNI | GGTCTC | 1 cut(s) | 753 |
| BsrBI | CCGCTC | 1 cut(s) | 4519 |
| BsrDI | GCAATG | 7 cut(s) | 118, 665, 930, 1696, 2365, 3063, 3447 |
| BsrFI | RCCGGY | 2 cut(s) | 74, 4522 |
| BsrGI | TGTACA | 2 cut(s) | 2547, 3161 |
| BssAI | RCCGGY | 2 cut(s) | 74, 4522 |
| BssECI | CCNNGG | 7 cut(s) | 2222, 3131, 3229, 3792, 4404, 4584, 5475 |
| BssNI | GRCGYC | 1 cut(s) | 3784 |
| BssSI | CACGAG | 2 cut(s) | 3369, 4866 |
| BssT1I | CCWWGG | 6 cut(s) | 2222, 3131, 3229, 3792, 4584, 5475 |
| Bst2BI | CACGAG | 2 cut(s) | 3369, 4866 |
| Bst4CI | ACNGT | 9 cut(s) | 708, 2053, 2110, 2650, 3322, 3560, 4202, 4764, 5588 |
| BstACI | GRCGYC | 1 cut(s) | 3784 |
| BstAFI | CTTAAG | 2 cut(s) | 1640, 4559 |
| BstAUI | TGTACA | 2 cut(s) | 2547, 3161 |
| BstBAI | YACGTR | 3 cut(s) | 413, 3449, 3518 |
| BstC8I | GCNNGC | 8 cut(s) | 72, 2726, 2987, 2991, 3468, 4524, 5190, 5686 |
| BstDSI | CCRYGG | 2 cut(s) | 3131, 5475 |
| BstFNI | CGCG | 1 cut(s) | 4043 |
| BstH2I | RGCGCY | 4 cut(s) | 2773, 3279, 3787, 5473 |
| BstHHI | GCGC | 6 cut(s) | 2772, 2913, 3278, 3786, 4117, 5472 |
| BstMAI | GTCTC | 9 cut(s) | 520, 753, 1497, 2691, 3071, 4032, 4191, 4356, 4496 |
| BstMCI | CGRYCG | 2 cut(s) | 4523, 5590 |
| BstNSI | RCATGY | 8 cut(s) | 899, 1000, 1466, 2315, 2462, 2548, 2989, 4221 |
| BstSFI | CTRYAG | 8 cut(s) | 387, 1859, 2649, 3119, 3545, 3609, 4632, 5697 |
| BstSLI | GKGCMC | 1 cut(s) | 2230 |
| BstSNI | TACGTA | 1 cut(s) | 3449 |
| BstUI | CGCG | 1 cut(s) | 4043 |
| BstV2I | GAAGAC | 3 cut(s) | 693, 828, 5180 |
| BstX2I | RGATCY | 9 cut(s) | 196, 1267, 1517, 1830, 1891, 4300, 4726, 5479, 5631 |
| BstYI | RGATCY | 9 cut(s) | 196, 1267, 1517, 1830, 1891, 4300, 4726, 5479, 5631 |
| BstZI | CGGCCG | 1 cut(s) | 4520 |
| Bsu15I | ATCGAT | 1 cut(s) | 797 |
| BsuI | GTATCC | 2 cut(s) | 1938, 5612 |
| BsuTUI | ATCGAT | 1 cut(s) | 797 |
| BtgI | CCRYGG | 2 cut(s) | 3131, 5475 |
| BtgZI | GCGATG | 1 cut(s) | 991 |
| BtsI | GCAGTG | 2 cut(s) | 894, 1812 |
| BtsIMutI | CAGTG | 8 cut(s) | 894, 1812, 1850, 2115, 2304, 3164, 3318, 4452 |
| BveI | ACCTGC | 4 cut(s) | 872, 1855, 3696, 3840 |
| Cac8I | GCNNGC | 8 cut(s) | 72, 2726, 2987, 2991, 3468, 4524, 5190, 5686 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3338 |
| CfoI | GCGC | 6 cut(s) | 2772, 2913, 3278, 3786, 4117, 5472 |
| Cfr10I | RCCGGY | 2 cut(s) | 74, 4522 |
| ClaI | ATCGAT | 1 cut(s) | 797 |
| CseI | GACGC | 4 cut(s) | 2640, 4049, 4805, 5318 |
| Csp6I | GTAC | 8 cut(s) | 734, 769, 2202, 2548, 3162, 4607, 5322, 5518 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3888, 3923 |
| CviQI | GTAC | 8 cut(s) | 734, 769, 2202, 2548, 3162, 4607, 5322, 5518 |
| DinI | GGCGCC | 1 cut(s) | 3785 |
| DraI | TTTAAA | 2 cut(s) | 873, 1680 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1341, 4205 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1341, 4205 |
| EaeI | YGGCCR | 3 cut(s) | 85, 4520, 4524 |
| EagI | CGGCCG | 1 cut(s) | 4520 |
| Ecl136II | GAGCTC | 1 cut(s) | 5104 |
| EclXI | CGGCCG | 1 cut(s) | 4520 |
| Eco105I | TACGTA | 1 cut(s) | 3449 |
| Eco130I | CCWWGG | 6 cut(s) | 2222, 3131, 3229, 3792, 4584, 5475 |
| Eco24I | GRGCYC | 1 cut(s) | 5106 |
| Eco31I | GGTCTC | 1 cut(s) | 753 |
| Eco32I | GATATC | 1 cut(s) | 805 |
| Eco47I | GGWCC | 7 cut(s) | 326, 355, 1175, 1334, 1543, 1982, 3929 |
| Eco47III | AGCGCT | 1 cut(s) | 3277 |
| Eco52I | CGGCCG | 1 cut(s) | 4520 |
| Eco53kI | GAGCTC | 1 cut(s) | 5104 |
| Eco57I | CTGAAG | 9 cut(s) | 617, 2873, 3024, 3524, 3660, 3852, 4440, 5694, 5700 |
| Eco72I | CACGTG | 1 cut(s) | 3518 |
| Eco88I | CYCGRG | 1 cut(s) | 124 |
| EcoICRI | GAGCTC | 1 cut(s) | 5104 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1543, 3226, 4746 |
| EcoRI | GAATTC | 3 cut(s) | 908, 1435, 4336 |
| EcoRV | GATATC | 1 cut(s) | 805 |
| EcoT14I | CCWWGG | 6 cut(s) | 2222, 3131, 3229, 3792, 4584, 5475 |
| EcoT22I | ATGCAT | 1 cut(s) | 683 |
| EcoT38I | GRGCYC | 1 cut(s) | 5106 |
| EgeI | GGCGCC | 1 cut(s) | 3785 |
| EheI | GGCGCC | 1 cut(s) | 3785 |
| ErhI | CCWWGG | 6 cut(s) | 2222, 3131, 3229, 3792, 4584, 5475 |
| Esp3I | CGTCTC | 2 cut(s) | 3071, 4032 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2075, 2107, 2790, 2822, 2982, 3014 |
| FaqI | GGGAC | 9 cut(s) | 141, 339, 1329, 1473, 1556, 1709, 2469, 4803, 5057 |
| FbaI | TGATCA | 3 cut(s) | 616, 1090, 2413 |
| FblI | GTMKAC | 2 cut(s) | 2736, 4553 |
| FriOI | GRGCYC | 1 cut(s) | 5106 |
| FseI | GGCCGGCC | 1 cut(s) | 4526 |
| FspBI | CTAG | 8 cut(s) | 2087, 2732, 3230, 3423, 3659, 3719, 4838, 4974 |
| GlaI | GCGC | 6 cut(s) | 2771, 2912, 3277, 3785, 4116, 5471 |
| GsaI | CCCAGC | 2 cut(s) | 3675, 4320 |
| GsuI | CTGGAG | 5 cut(s) | 2289, 4281, 4325, 4518, 5430 |
| HaeII | RGCGCY | 4 cut(s) | 2773, 3279, 3787, 5473 |
| HapII | CCGG | 6 cut(s) | 75, 1173, 2920, 3327, 4523, 5527 |
| HgaI | GACGC | 4 cut(s) | 2640, 4049, 4805, 5318 |
| HhaI | GCGC | 6 cut(s) | 2772, 2913, 3278, 3786, 4117, 5472 |
| Hin1I | GRCGYC | 1 cut(s) | 3784 |
| Hin6I | GCGC | 6 cut(s) | 2770, 2911, 3276, 3784, 4115, 5470 |
| HinP1I | GCGC | 6 cut(s) | 2770, 2911, 3276, 3784, 4115, 5470 |
| HincII | GTYRAC | 3 cut(s) | 2583, 4165, 4467 |
| HindII | GTYRAC | 3 cut(s) | 2583, 4165, 4467 |
| HpaII | CCGG | 6 cut(s) | 75, 1173, 2920, 3327, 4523, 5527 |
| Hpy99I | CGWCG | 1 cut(s) | 5334 |
| HpyCH4III | ACNGT | 9 cut(s) | 708, 2053, 2110, 2650, 3322, 3560, 4202, 4764, 5588 |
| HpyCH4IV | ACGT | 5 cut(s) | 412, 3448, 3517, 5152, 5547 |
| HpySE526I | ACGT | 5 cut(s) | 412, 3448, 3517, 5152, 5547 |
| Hsp92I | GRCGYC | 1 cut(s) | 3784 |
| HspAI | GCGC | 6 cut(s) | 2770, 2911, 3276, 3784, 4115, 5470 |
| KasI | GGCGCC | 1 cut(s) | 3783 |
| KflI | GGGWCCC | 1 cut(s) | 1543 |
| Kpn2I | TCCGGA | 2 cut(s) | 1172, 2919 |
| KroI | GCCGGC | 1 cut(s) | 4522 |
| KroNI | GCCGGC | 1 cut(s) | 4524 |
| Ksp22I | TGATCA | 3 cut(s) | 616, 1090, 2413 |
| LguI | GCTCTTC | 1 cut(s) | 621 |
| MaeI | CTAG | 8 cut(s) | 2087, 2732, 3230, 3423, 3659, 3719, 4838, 4974 |
| MaeII | ACGT | 5 cut(s) | 412, 3448, 3517, 5152, 5547 |
| MaeIII | GTNAC | 9 cut(s) | 854, 1135, 1142, 1221, 1666, 2802, 3322, 3653, 5636 |
| MbiI | CCGCTC | 1 cut(s) | 4519 |
| MfeI | CAATTG | 1 cut(s) | 4032 |
| MflI | RGATCY | 9 cut(s) | 196, 1267, 1517, 1830, 1891, 4300, 4726, 5479, 5631 |
| MhlI | GDGCHC | 5 cut(s) | 2230, 2557, 4865, 4878, 5106 |
| Mly113I | GGCGCC | 1 cut(s) | 3784 |
| MlyI | GAGTC | 9 cut(s) | 116, 1316, 1622, 1663, 1691, 3070, 3607, 4675, 5210 |
| MmeI | TCCRAC | 5 cut(s) | 1284, 2635, 3762, 4673, 5329 |
| Mph1103I | ATGCAT | 1 cut(s) | 683 |
| MroI | TCCGGA | 2 cut(s) | 1172, 2919 |
| MroNI | GCCGGC | 1 cut(s) | 4522 |
| MroXI | GAANNNNTTC | 5 cut(s) | 630, 2620, 3334, 4059, 4476 |
| MslI | CAYNNNNRTG | 4 cut(s) | 135, 1066, 1664, 2037 |
| MspA1I | CMGCKG | 7 cut(s) | 248, 545, 3544, 3608, 3830, 3839, 4316 |
| MspCI | CTTAAG | 2 cut(s) | 1640, 4559 |
| MspI | CCGG | 6 cut(s) | 75, 1173, 2920, 3327, 4523, 5527 |
| MunI | CAATTG | 1 cut(s) | 4032 |
| Mva1269I | GAATGC | 4 cut(s) | 726, 836, 3967, 5250 |
| MvnI | CGCG | 1 cut(s) | 4043 |
| NaeI | GCCGGC | 1 cut(s) | 4524 |
| NarI | GGCGCC | 1 cut(s) | 3784 |
| NciI | CCSGG | 1 cut(s) | 5528 |
| NcoI | CCATGG | 2 cut(s) | 3131, 5475 |
| NgoMIV | GCCGGC | 1 cut(s) | 4522 |
| NmuCI | GTSAC | 5 cut(s) | 854, 1221, 1666, 3653, 5636 |
| NsiI | ATGCAT | 1 cut(s) | 683 |
| NspI | RCATGY | 8 cut(s) | 899, 1000, 1466, 2315, 2462, 2548, 2989, 4221 |
| OliI | CACNNNNGTG | 1 cut(s) | 1066 |
| PaeI | GCATGC | 1 cut(s) | 2989 |
| PaqCI | CACCTGC | 1 cut(s) | 872 |
| PciI | ACATGT | 3 cut(s) | 2311, 2458, 2544 |
| PciSI | GCTCTTC | 1 cut(s) | 621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3523 |
| PctI | GAATGC | 4 cut(s) | 726, 836, 3967, 5250 |
| PdiI | GCCGGC | 1 cut(s) | 4524 |
| PdmI | GAANNNNTTC | 5 cut(s) | 630, 2620, 3334, 4059, 4476 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1718 |
| PfoI | TCCNGGA | 3 cut(s) | 2266, 2689, 4495 |
| PleI | GAGTC | 9 cut(s) | 116, 1315, 1622, 1663, 1691, 3069, 3606, 4674, 5210 |
| PluTI | GGCGCC | 1 cut(s) | 3787 |
| PmaCI | CACGTG | 1 cut(s) | 3518 |
| PmlI | CACGTG | 1 cut(s) | 3518 |
| PpsI | GAGTC | 9 cut(s) | 116, 1315, 1622, 1663, 1691, 3069, 3606, 4674, 5210 |
| Ppu21I | YACGTR | 3 cut(s) | 413, 3449, 3518 |
| PpuMI | RGGWCCY | 1 cut(s) | 1543 |
| PscI | ACATGT | 3 cut(s) | 2311, 2458, 2544 |
| PshBI | ATTAAT | 1 cut(s) | 1194 |
| PsiI | TTATAA | 1 cut(s) | 2000 |
| Psp124BI | GAGCTC | 1 cut(s) | 5106 |
| Psp5II | RGGWCCY | 1 cut(s) | 1543 |
| PspCI | CACGTG | 1 cut(s) | 3518 |
| PspFI | CCCAGC | 2 cut(s) | 3671, 4316 |
| PspPPI | RGGWCCY | 1 cut(s) | 1543 |
| PstI | CTGCAG | 2 cut(s) | 391, 3549 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3338 |
| PsuI | RGATCY | 9 cut(s) | 196, 1267, 1517, 1830, 1891, 4300, 4726, 5479, 5631 |
| PvuII | CAGCTG | 6 cut(s) | 248, 3544, 3608, 3830, 3839, 4316 |
| RigI | GGCCGGCC | 1 cut(s) | 4526 |
| RsaI | GTAC | 8 cut(s) | 735, 770, 2203, 2549, 3163, 4608, 5323, 5519 |
| RsaNI | GTAC | 8 cut(s) | 734, 769, 2202, 2548, 3162, 4607, 5322, 5518 |
| RseI | CAYNNNNRTG | 4 cut(s) | 135, 1066, 1664, 2037 |
| SacI | GAGCTC | 1 cut(s) | 5106 |
| SapI | GCTCTTC | 1 cut(s) | 621 |
| SchI | GAGTC | 9 cut(s) | 116, 1316, 1622, 1663, 1691, 3070, 3607, 4675, 5210 |
| SduI | GDGCHC | 5 cut(s) | 2230, 2557, 4865, 4878, 5106 |
| SfcI | CTRYAG | 8 cut(s) | 387, 1859, 2649, 3119, 3545, 3609, 4632, 5697 |
| SfoI | GGCGCC | 1 cut(s) | 3785 |
| SinI | GGWCC | 7 cut(s) | 326, 355, 1175, 1334, 1543, 1982, 3929 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 135, 1066, 1664, 2037 |
| SmlI | CTYRAG | 8 cut(s) | 1318, 1415, 1640, 1818, 1977, 3008, 3139, 4559 |
| SmoI | CTYRAG | 8 cut(s) | 1318, 1415, 1640, 1818, 1977, 3008, 3139, 4559 |
| SnaBI | TACGTA | 1 cut(s) | 3449 |
| SphI | GCATGC | 1 cut(s) | 2989 |
| SsiI | CCGC | 6 cut(s) | 545, 1337, 1738, 2260, 2434, 4519 |
| SspDI | GGCGCC | 1 cut(s) | 3783 |
| SspMI | CTAG | 8 cut(s) | 2087, 2732, 3230, 3423, 3659, 3719, 4838, 4974 |
| SstI | GAGCTC | 1 cut(s) | 5106 |
| StyI | CCWWGG | 6 cut(s) | 2222, 3131, 3229, 3792, 4584, 5475 |
| TaaI | ACNGT | 9 cut(s) | 708, 2053, 2110, 2650, 3322, 3560, 4202, 4764, 5588 |
| TaiI | ACGT | 5 cut(s) | 415, 3451, 3520, 5155, 5550 |
| TaqI | TCGA | 9 cut(s) | 141, 258, 797, 1396, 1909, 3307, 3489, 5260, 5395 |
| TatI | WGTACW | 4 cut(s) | 2547, 3161, 5321, 5517 |
| TauI | GCSGC | 2 cut(s) | 2263, 4522 |
| TscAI | CASTG | 8 cut(s) | 894, 1819, 1857, 2115, 2304, 3171, 3325, 4452 |
| TseFI | GTSAC | 5 cut(s) | 854, 1221, 1666, 3653, 5636 |
| Tsp45I | GTSAC | 5 cut(s) | 854, 1221, 1666, 3653, 5636 |
| TspGWI | ACGGA | 5 cut(s) | 705, 873, 2744, 2780, 2959 |
| TspRI | CASTG | 8 cut(s) | 894, 1819, 1857, 2115, 2304, 3171, 3325, 4452 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1718 |
| Vha464I | CTTAAG | 2 cut(s) | 1640, 4559 |
| VpaK11BI | GGWCC | 7 cut(s) | 326, 355, 1175, 1334, 1543, 1982, 3929 |
| VspI | ATTAAT | 1 cut(s) | 1194 |
| XbaI | TCTAGA | 1 cut(s) | 4837 |
| XceI | RCATGY | 8 cut(s) | 899, 1000, 1466, 2315, 2462, 2548, 2989, 4221 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1920 |
| XmaJI | CCTAGG | 1 cut(s) | 3229 |
| XmiI | GTMKAC | 2 cut(s) | 2736, 4553 |
| XmnI | GAANNNNTTC | 5 cut(s) | 630, 2620, 3334, 4059, 4476 |
| XspI | CTAG | 8 cut(s) | 2087, 2732, 3230, 3423, 3659, 3719, 4838, 4974 |
| Zsp2I | ATGCAT | 1 cut(s) | 683 |