RLG00000032019

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004130
Physical Location & Seq
Forward (+)
10290048 .. 10296183
6136 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032019

Sequence Viewer

Length: 4857 bp
ATGGGTTGTAATTCAGATGGTGGGTCCCAAGTGTTTAGGGGTGAAGATGATGATGAAGAATATGAGGAGGATGGTAGGGGTAGTCGGTTTCTTGGGTTTATGTTTGGTAATGTGGATGACTCGGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGAAGCATTTTGCTGCACTTTCCGAGACGCTTGGTCCTGCTTTCACGGATATGGACATGTCAGTGAAGTTACCAAGGACATTAAGCGATGCGGTGGAGCAAGATTATGATGAGAAGGCTGAGGATGCTGTGAATTATTTTGACATTGATGAGGATTTTGAGGGTCCGGAGATTGAAGGTGCTACTGAGGAGGACCATATTTTGCCGAGAGATGATTACCTTTCTGCTAAAGTTTCAGTGGATAAAATTCGAGAAGTGGAACATGAGGTGGTTGAAAATTATGATGAGGAGACTGAACAGGAAAAGGAACAAAAGTTGGTTGAACAGGATGTTAGAATTTCCCCACCGCTGCCAGTTATATGCATAGAAGATGGAGTGGTGATCCTAAGATTCTCAGAAATCTTTGGCACTCATGTAAAGGAGGCAGTTAAAAGAAACCATAGGTACTCTGTTTGCAAAAGTATGCATAAATCCATGGATGTTTCGGATATTGTTGAAGAGGATGAAAAGGCATTTCTCAAAGGTACTGGTGAAGGATTTACAGCTTTGGAAGACGCTGATGGAGTGAAACATAACATCTCAGAATTGAATGATGATGATTTGGAATTTGCAAAATTTCGTGTTCACAAAGAGGCTACCTCATTTGCTGTGCTGGGTGGGCCGGGAAAGGGCACGTACCTTTTTGCGGCACCAATGAAAGAAGATCTAGATGTGGATCTTTTTGTGGAAAGGCAGTCACCTTCGTGTCCTACATTTTACCCTCTTGATCAACAAGACTGGGAAGATGGAATTATTTGGGACAAGTCTCCTGTAATGAGTGACAATGCTGTTGAGAGTTGTGAAATGTCAGGACCTGATCACACCTCAGTTGATAGTGAAACAGAATCTGATAGTGGGTCGCAAAATATTCAATACCATCCCCAACTCTTAAGGCTAGAATCTCGATTTGAAGTGGATGACCAGGCAAATGGTATAATGGAGAATGTCGATCAGAAGCTTCATAAGAGAGATGCTGTGAGGCCGTTCAGCAAGCTTACCTCACATAACAGAGACATGCTAAAAGGATCGTGGTTAGACCAGATCATATGGGACCCAAACATGCCTATGAGGAAGCCAAAGCTTATCCTTGATCTTGAAGATGAGCAAATGCTCTTTGAGATTTTGGATAACAAGGATTGTGAACATCTTACGCTTCATTCAGGGGCCACGATCATAACTCCCCCTCTAAAGTCAAGCAATGAGGATTCTTTGGATTTGCCAAGTCATGGAGCTCAGTTTTGTTGGCGATATGTTGCTAATGACAAGCACTATGCAAACAGGAAAACATCTTATCAACTAAAATTGAATTCTAAAAGACGCACTGCTCAAAGCATAAAGATTTATCACTCACAACCTGCACTTCGGCTACAGACTATGAAGCTGAAGTTAAGCAATAAGGAGGTTGCTAATTTTCATCGACCAAAGGCTTTATGGTATCCATGCGACAATGAGAAGGCTGTAAAAGAAATAGGGAAGCTGCCTACTCAAGGACCAATGAAAATTATTATAAAGAGCTTGGGTGGCAAAGGCAAGTTTAAGTCATCTGAAACAGTGAGGATGTTTTATAGAGGGAAGGAACTTGAAGATGATAAATCTCTAGCTGCTCAAAATGTTCAGCGGAACTCTTTGCTTTATCTGGTCTGTACAAAAATATATTTGTTGCCAAGGTCACAAAAACTTCCTGGTGAGAATAAATCGTTGCGTCCTCCTGGAGCATTTAAGAAGAAATCTGACATTTCAGCGAAAGATGGTCATGTCTTTCTAGTAGAGTATTGTGAGGAAAGACCCTTACTTCTGAGCAATATTGGTATGGGTGCAAGATTGTGCACTTATTATCAAAATTCAGCCCCAGATGATCAAAATGGATCTTTGTTGCACAATGAAAACAGCAGCTTGGGTCATGTCATTTCGCTAAACCCTGCTGATAAATCACCTTTTCTTGGAGATACAAAAGCTGGTTGCTGTCAGTCATCTCTTGAGACAAACATGTATAGAGCACCTCTTTTTTCTCATAAGGTGCCATCAACTGATTATCTGTTAGTTCGTTCTGCAAAGGGAAAGCTTTCAATTAGACGCATTGACAAGCTTAATGTTGTAGGGCAACAGGAACCTCTCATGAAGGTAATGTCTCCTGGAACTAAGAATCTGAAAAATTACATGCTTAACAGGCTCCTAGTCTACATGTGCCGTGAGTTCCGTGCTGCCGAAGAGTGCCATTTCCCTCCATGTATTCGTGTAGATGAGTTACGTGCACAATTTCCTTACCTATCTGATCCCTTTATCAAAAACAAAGTGAAGAAACTTGTGAATTTGCCGAAGGGGTCAAGTGGACATTGGGTTAAGAAGAGCAATTTCTGGATTTTCTCAGAGGATGAATTAAGAAATATGGTGAAACCAGAAGAGGTGTGTGCCTATGAAAGCATGCAAGCTGGTCTTTATCGGCTCAAACATTTACAAATTACTCAAACTCATCCTTCTGTCATGTCATCTGCAATGAGTCATCTCCGCGACGAAGGTAATACTCTGGCTGCTGCATCTCACATCGAAAGGGAACTACAGACAACTCCATGGAATTTGAGTTGCAATTTTGTAGCCTGTACAATGGGAAAAGAAAATATTGAGCGTTTAGAAATATCTGGCCTTGGTGATCCATCTGGCCGGGGCCTAGGTTTTAGTTATGTTCGCGCTGCTCCAAAATCATCAATGTCCAATGCAGCAGGAAAGAAAAACTGTGCTACTGGTAGAGGACGTTCAGATTCTTTCCGCAGGGAGAGTTGTCAGGAAATTTGGGAACAGCAAGTTCATAGTCTTTCAGCAGCAGGCAGTGATAAGAATGAGAGTGATTCTGAAGGAAATTATAGTGATCTAGATTCCTGTGCTGGGAGTTTAGAAAATCTGCTTGATGCAGAAGAAGGGGGTGACCATGAATTTGAGTGTGACAAAGCAGATGACGTTAAAGGGCTTGTAATGAGAAGGCTCCTGTCCTTGAATCCAGCAGAGGAAAGTGAAGATGAAGCAGCTGAAGCAGCTGAGTTATGCCGGTTGCTTATGGGTAATGAAACTGAGAGGAAGAAAAAGAAAAAAACAAGAAATGCAGATACGGTAAAGCAAAACATTGTTGCACCACAATTTGATGGTTCCTATACTCCTAAAGAGAAACCAATTGGAGACAGCCAAGTGATGGAAAATCTTCTTAAAAGAAGCAAGACTGGAGAATTAAAATGGATGAAAGGGAATGATACATTGATACTGCACCTATTAAGAGAGAATTTTGTATGTGGAGCATATGGTCAGCATGGACACATGAGGACAAACAAGAACTGCCCCAAGTTTGGAAAAGATCTGAAAGCGCACATTGAAACTCCAGATGTGGAGAATGTACTTGGAAAGTCCATTCCTCTGAATACATCTAGTCGGTTTCAGCAGAAAACTACAACAAAGAAGCTGATACCAAAGACTGTAATTGACGTTGAAGGTTCTGAGCTTGAAAACCTTGGTCCGACCTCAAAGGTTGTTCCATTGACATTCAAAGTTGCGTTAGGTGAAAAGGTCCCTGACAAACAAGCTCCTGGAGAAACAGAGAGTTATCGGAATCCAGTTACATCTGATCTTGAAGCTGGGAATCCCGCTGTTAAGGTTAGTAAAATAATAATTTCTAACAAGACGAAACCTGGAGAGGTATCAGTTGAATCTCATAAACCCCCTATTGGGATATGGTCTCCCACAGATATAGATAGGGGTCAGGTCAAGTCCCAAAAGCCACGGCCAACTATAGTCATACAGCCTCCAGCAACCACAGTTGGAGATCAGGTGGAATCTCAAAAGCCCTCTGTTGCTAAACTGCCGTTGGTGGAAGCTCACAAAGAGCAACATCATCAGAAAAGACATGAGAAGCAGAATAGCATGTATTTTTCTATCGAAGCAGTGAAAAAGAAAGCAAGAGATGATAGAAGATTGAGGGAGGAGCAAGAGAAACGGAGAATTGAAGAGAGTACCAGGAGGCTGTATGACAATGAAATTAGGATCGCAAAGGAGCAAGAAAGACTTGCAGAACTTAAAAAATATGAAGCAGCCATCAAACAAGAGAGAGAGGAAGAACTCCAGAAAGTGAAGAAGAATAAAATTATGAATAGAAGGCCACAGATAAATGATGACTATTTAGAGGACTTGCAGACAAGAACATTTGGAAAAAGGATGCCAGAAAGAAATCAGGGGGCCAAAAGGAGGCCAACTGTTGATTTGGGAAGTTATGGTGGAGATTATGCCCCAACTACCAAGCGTCGTAAAGGAGGAGAGGTTGATTTGGCAAACATCTTGGAGCGCATTGTAGGATCCCTCAAAGATCGAATTAAAATCTCGTATTTTTTTTTAAAACCAGTATCCAAAAAGGAAGCTCCTGATTACCAGGACATCATAAAGCACCCAATGGATCTATCGACGATCAAGGTGAAGGTTCGGAATATGGAGTACAAGAGCCGGGAGCAATTCAGAAGAGATGTGTGGCAGATTGCCTTTAATGCCCATAGATATAATGATGGGCGTAACCCGGGTATCCCTCCACTTGCAGATCAGCTTTTAAACTTTTGCGACTGTGTGTTGGTTGAGAATGAAGAAAGCTTGACTGAAGCGGAAGCAGGCATTGAATATGCAGATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

1619

Amino Acids

183.12

Weight (kDa)

5.87

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP-binding PF09247 18 - 62 1.1e-09 TATA box-binding protein binding
DUF3591 PF12157 485 - 986 9.1e-101 Protein of unknown function (DUF3591)
Bromodomain PF00439 1514 - 1580 3.1e-17 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1706
Acc36I ACCTGC 1 cut(s) 1561
AccB1I GGYRCC 2 cut(s) 847, 2215
AccB7I CCANNNNNTGG 2 cut(s) 1424, 3379
AccI GTMKAC 1 cut(s) 2376
AccII CGCG 2 cut(s) 2706, 2883
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 8 cut(s) 251, 506, 845, 1816, 2704, 2962, 3825, 4826
AcoI YGGCCR 2 cut(s) 2854, 3962
AcuI CTGAAG 4 cut(s) 1601, 3066, 3240, 4842
AfaI GTAC 8 cut(s) 605, 685, 836, 1843, 2797, 3579, 4192, 4667
AflII CTTAAG 1 cut(s) 1087
AflIII ACRYGT 3 cut(s) 216, 2184, 2379
AhdI GACNNNNNGTC 1 cut(s) 192
AjnI CCWGG 8 cut(s) 1119, 1879, 1906, 2329, 3766, 3868, 4193, 4602
AleI CACNNNNGTG 1 cut(s) 901
Alw21I GWGCWC 4 cut(s) 1432, 2027, 2197, 2452
Alw26I GTCTC 8 cut(s) 179, 443, 969, 1203, 2171, 2331, 3360, 3921
Alw44I GTGCAC 2 cut(s) 2023, 2448
AlwNI CAGNNNCTG 2 cut(s) 1013, 1046
Ama87I CYCGRG 2 cut(s) 121, 4744
Aor13HI TCCGGA 1 cut(s) 325
ApaLI GTGCAC 2 cut(s) 2023, 2448
ArsI GACNNNNNNTTYG 2 cut(s) 3110, 3142
Asp700I GAANNNNTTC 2 cut(s) 2260, 3387
AspA2I CCTAGG 1 cut(s) 2863
AspLEI GCGC 3 cut(s) 2885, 3550, 4521
AsuC2I CCSGG 5 cut(s) 822, 2858, 4676, 4745, 4746
AvaI CYCGRG 2 cut(s) 121, 4744
AvaII GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1249, 1688, 3695, 3748
AvrII CCTAGG 1 cut(s) 2863
BaeGI GKGCMC 3 cut(s) 833, 2027, 2452
BaeI ACNNNNGTAYC 2 cut(s) 4732, 4765
BamHI GGATCC 1 cut(s) 4529
BanI GGYRCC 2 cut(s) 847, 2215
BanII GRGCYC 1 cut(s) 1432
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 4 cut(s) 1432, 2027, 2197, 2452
BbvCI CCTCAGC 1 cut(s) 279
BceAI ACGGC 4 cut(s) 1165, 2370, 3977, 4027
BciT130I CCWGG 8 cut(s) 1121, 1881, 1908, 2331, 3768, 3870, 4195, 4604
BciVI GTATCC 3 cut(s) 1644, 4588, 4760
BclI TGATCA 3 cut(s) 925, 1015, 2053
BcnI CCSGG 5 cut(s) 822, 2858, 4676, 4745, 4746
BcoDI GTCTC 8 cut(s) 179, 443, 969, 1203, 2171, 2331, 3360, 3921
BfaI CTAG 9 cut(s) 866, 1094, 1796, 1961, 2372, 2864, 3065, 3609, 4855
BfmI CTRYAG 3 cut(s) 1565, 2753, 3969
BfrI CTTAAG 1 cut(s) 1087
BfuAI ACCTGC 1 cut(s) 1561
BfuI GTATCC 3 cut(s) 1644, 4588, 4760
BglII AGATCT 2 cut(s) 862, 3538
BlnI CCTAGG 1 cut(s) 2863
Bme18I GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1249, 1688, 3695, 3748
BmeRI GACNNNNNGTC 1 cut(s) 192
BmeT110I CYCGRG 2 cut(s) 121, 4744
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 7 cut(s) 145, 238, 274, 1159, 2741, 3091, 4383
BmuI ACTGGG 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 717
BplI GAGNNNNNCTC 2 cut(s) 782, 814
BpmI CTGGAG 7 cut(s) 1929, 3429, 3546, 3789, 3891, 3969, 4283
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 1668, 2195
BpuMI CCSGG 5 cut(s) 822, 2858, 4676, 4745, 4746
BsaAI YACGTR 2 cut(s) 834, 2447
BsaBI GATNNNNATC 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 3921
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 4 cut(s) 3993, 4023, 4479, 4509
Bse118I RCCGGY 1 cut(s) 3237
Bse1I ACTGG 7 cut(s) 512, 691, 941, 2941, 3412, 3794, 4574
Bse3DI GCAATG 2 cut(s) 1402, 2697
Bse8I GATNNNNATC 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 8 cut(s) 1121, 1881, 1908, 2331, 3768, 3870, 4195, 4604
BseJI GATNNNNATC 1 cut(s) 873
BseMI GCAATG 2 cut(s) 1402, 2697
BseNI ACTGG 7 cut(s) 512, 691, 941, 2941, 3412, 3794, 4574
BseRI GAGGAG 5 cut(s) 80, 362, 461, 4175, 4503
BseSI GKGCMC 3 cut(s) 833, 2027, 2452
BseYI CCCAGC 3 cut(s) 811, 3077, 3815
BsgI GTGCAG 3 cut(s) 159, 1539, 3434
Bsh1236I CGCG 2 cut(s) 2706, 2883
BshNI GGYRCC 2 cut(s) 847, 2215
BsiHKAI GWGCWC 4 cut(s) 1432, 2027, 2197, 2452
BsiHKCI CYCGRG 2 cut(s) 121, 4744
BsiSI CCGG 6 cut(s) 326, 821, 2857, 3238, 4675, 4745
BslFI GGGAC 5 cut(s) 10, 971, 1262, 3734, 3934
BsmAI GTCTC 8 cut(s) 179, 443, 969, 1203, 2171, 2331, 3360, 3921
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 5 cut(s) 10, 971, 1262, 3734, 3934
Bso31I GGTCTC 1 cut(s) 3921
BsoBI CYCGRG 2 cut(s) 121, 4744
Bsp1286I GDGCHC 5 cut(s) 833, 1432, 2027, 2197, 2452
Bsp13I TCCGGA 1 cut(s) 325
Bsp1407I TGTACA 2 cut(s) 1841, 2795
Bsp19I CCATGG 2 cut(s) 633, 2765
BspACI CCGC 8 cut(s) 251, 506, 845, 1816, 2704, 2962, 3825, 4826
BspEI TCCGGA 1 cut(s) 325
BspFNI CGCG 2 cut(s) 2706, 2883
BspHI TCATGA 1 cut(s) 2313
BspMI ACCTGC 1 cut(s) 1561
BspQI GCTCTTC 1 cut(s) 2537
BspT107I GGYRCC 2 cut(s) 847, 2215
BspTI CTTAAG 1 cut(s) 1087
BspTNI GGTCTC 1 cut(s) 3921
BsrDI GCAATG 2 cut(s) 1402, 2697
BsrFI RCCGGY 1 cut(s) 3237
BsrGI TGTACA 2 cut(s) 1841, 2795
BsrI ACTGG 7 cut(s) 512, 691, 941, 2941, 3412, 3794, 4574
BssAI RCCGGY 1 cut(s) 3237
BssT1I CCWWGG 7 cut(s) 233, 633, 1862, 2765, 2839, 2863, 3691
Bst2UI CCWGG 8 cut(s) 1121, 1881, 1908, 2331, 3768, 3870, 4195, 4604
Bst4CI ACNGT 7 cut(s) 1750, 2930, 3301, 3658, 3997, 4432, 4790
Bst6I CTCTTC 6 cut(s) 651, 2400, 2537, 2592, 4179, 4684
BstAFI CTTAAG 1 cut(s) 1087
BstAUI TGTACA 2 cut(s) 1841, 2795
BstBAI YACGTR 2 cut(s) 834, 2447
BstC8I GCNNGC 5 cut(s) 1190, 2621, 2625, 3019, 4834
BstDSI CCRYGG 3 cut(s) 633, 2765, 3959
BstEII GGTNACC 1 cut(s) 3116
BstENI CCTNNNNNAGG 2 cut(s) 149, 1683
BstFNI CGCG 2 cut(s) 2706, 2883
BstHHI GCGC 3 cut(s) 2885, 3550, 4521
BstMAI GTCTC 8 cut(s) 179, 443, 969, 1203, 2171, 2331, 3360, 3921
BstMWI GCNNNNNNNGC 7 cut(s) 284, 817, 1719, 2365, 3221, 3224, 4715
BstNI CCWGG 8 cut(s) 1121, 1881, 1908, 2331, 3768, 3870, 4195, 4604
BstNSI RCATGY 8 cut(s) 220, 1216, 1261, 2188, 2359, 2383, 2623, 4105
BstPI GGTNACC 1 cut(s) 3116
BstSFI CTRYAG 3 cut(s) 1565, 2753, 3969
BstSLI GKGCMC 3 cut(s) 833, 2027, 2452
BstUI CGCG 2 cut(s) 2706, 2883
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 6 cut(s) 862, 874, 2063, 3538, 4529, 4627
BstXI CCANNNNNNTGG 1 cut(s) 1127
BstYI RGATCY 6 cut(s) 862, 874, 2063, 3538, 4529, 4627
BsuI GTATCC 3 cut(s) 1644, 4588, 4760
BtgI CCRYGG 3 cut(s) 633, 2765, 3959
BtgZI GCGATG 1 cut(s) 261
BtsI GCAGTG 3 cut(s) 1518, 3028, 4128
BtsIMutI CAGTG 6 cut(s) 228, 402, 1518, 1755, 3028, 4128
BveI ACCTGC 1 cut(s) 1561
Cac8I GCNNGC 5 cut(s) 1190, 2621, 2625, 3019, 4834
CaiI CAGNNNCTG 2 cut(s) 1013, 1046
CciI TCATGA 1 cut(s) 2313
CfoI GCGC 3 cut(s) 2885, 3550, 4521
Cfr10I RCCGGY 1 cut(s) 3237
Cfr9I CCCGGG 1 cut(s) 4744
CseI GACGC 6 cut(s) 196, 722, 1524, 1889, 2280, 4466
Csp6I GTAC 8 cut(s) 604, 684, 835, 1842, 2796, 3578, 4191, 4666
CviQI GTAC 8 cut(s) 604, 684, 835, 1842, 2796, 3578, 4191, 4666
DraI TTTAAA 2 cut(s) 4569, 4776
DriI GACNNNNNGTC 1 cut(s) 192
EaeI YGGCCR 2 cut(s) 2854, 3962
Eam1104I CTCTTC 6 cut(s) 651, 2400, 2537, 2592, 4179, 4684
Eam1105I GACNNNNNGTC 1 cut(s) 192
EarI CTCTTC 6 cut(s) 651, 2400, 2537, 2592, 4179, 4684
Ecl136II GAGCTC 1 cut(s) 1430
Eco130I CCWWGG 7 cut(s) 233, 633, 1862, 2765, 2839, 2863, 3691
Eco24I GRGCYC 1 cut(s) 1432
Eco31I GGTCTC 1 cut(s) 3921
Eco32I GATATC 1 cut(s) 4852
Eco47I GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1249, 1688, 3695, 3748
Eco53kI GAGCTC 1 cut(s) 1430
Eco57I CTGAAG 4 cut(s) 1601, 3066, 3240, 4842
Eco88I CYCGRG 2 cut(s) 121, 4744
Eco91I GGTNACC 1 cut(s) 3116
EcoICRI GAGCTC 1 cut(s) 1430
EcoNI CCTNNNNNAGG 2 cut(s) 149, 1683
EcoO109I RGGNCCY 5 cut(s) 24, 1010, 1249, 2860, 3748
EcoO65I GGTNACC 1 cut(s) 3116
EcoRI GAATTC 1 cut(s) 1504
EcoRII CCWGG 8 cut(s) 1119, 1879, 1906, 2329, 3766, 3868, 4193, 4602
EcoRV GATATC 1 cut(s) 4852
EcoT14I CCWWGG 7 cut(s) 233, 633, 1862, 2765, 2839, 2863, 3691
EcoT22I ATGCAT 2 cut(s) 524, 627
EcoT38I GRGCYC 1 cut(s) 1432
ErhI CCWWGG 7 cut(s) 233, 633, 1862, 2765, 2839, 2863, 3691
Esp3I CGTCTC 1 cut(s) 179
FalI AAGNNNNNCTT 4 cut(s) 2616, 2648, 4227, 4259
FaqI GGGAC 5 cut(s) 10, 971, 1262, 3734, 3934
FauI CCCGC 1 cut(s) 3832
FauNDI CATATG 2 cut(s) 1244, 3484
FbaI TGATCA 3 cut(s) 925, 1015, 2053
FblI GTMKAC 1 cut(s) 2376
FriOI GRGCYC 1 cut(s) 1432
FspBI CTAG 9 cut(s) 866, 1094, 1796, 1961, 2372, 2864, 3065, 3609, 4855
GlaI GCGC 3 cut(s) 2884, 3549, 4520
GsaI CCCAGC 3 cut(s) 815, 3081, 3819
GsuI CTGGAG 7 cut(s) 1929, 3429, 3546, 3789, 3891, 3969, 4283
HapII CCGG 6 cut(s) 326, 821, 2857, 3238, 4675, 4745
HgaI GACGC 6 cut(s) 196, 722, 1524, 1889, 2280, 4466
HhaI GCGC 3 cut(s) 2885, 3550, 4521
Hin6I GCGC 3 cut(s) 2883, 3548, 4519
HinP1I GCGC 3 cut(s) 2883, 3548, 4519
HindIII AAGCTT 6 cut(s) 1154, 1190, 1277, 2258, 2282, 4813
HpaII CCGG 6 cut(s) 326, 821, 2857, 3238, 4675, 4745
Hpy166II GTNNAC 6 cut(s) 784, 1340, 2025, 2377, 2450, 2528
Hpy8I GTNNAC 6 cut(s) 784, 1340, 2025, 2377, 2450, 2528
Hpy99I CGWCG 3 cut(s) 2711, 4482, 4639
HpyCH4III ACNGT 7 cut(s) 1750, 2930, 3301, 3658, 3997, 4432, 4790
HpyCH4IV ACGT 5 cut(s) 833, 2446, 2947, 3150, 3666
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 817, 1719, 2365, 3221, 3224, 4715
HpySE526I ACGT 5 cut(s) 833, 2446, 2947, 3150, 3666
HspAI GCGC 3 cut(s) 2883, 3548, 4519
KflI GGGWCCC 2 cut(s) 24, 1249
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 3 cut(s) 925, 1015, 2053
LguI GCTCTTC 1 cut(s) 2537
LweI GCATC 7 cut(s) 145, 238, 274, 1159, 2741, 3091, 4383
MaeI CTAG 9 cut(s) 866, 1094, 1796, 1961, 2372, 2864, 3065, 3609, 4855
MaeII ACGT 5 cut(s) 833, 2446, 2947, 3150, 3666
MaeIII GTNAC 9 cut(s) 228, 894, 977, 1866, 2442, 3116, 3134, 3796, 4739
MfeI CAATTG 1 cut(s) 3360
MflI RGATCY 6 cut(s) 862, 874, 2063, 3538, 4529, 4627
MhlI GDGCHC 5 cut(s) 833, 1432, 2027, 2197, 2452
MlyI GAGTC 2 cut(s) 113, 2704
MmeI TCCRAC 2 cut(s) 3722, 3979
Mph1103I ATGCAT 2 cut(s) 524, 627
MroI TCCGGA 1 cut(s) 325
MroXI GAANNNNTTC 2 cut(s) 2260, 3387
MslI CAYNNNNRTG 4 cut(s) 209, 221, 901, 1262
MspA1I CMGCKG 5 cut(s) 508, 1816, 3218, 3227, 3827
MspCI CTTAAG 1 cut(s) 1087
MspI CCGG 6 cut(s) 326, 821, 2857, 3238, 4675, 4745
MunI CAATTG 1 cut(s) 3360
MvaI CCWGG 8 cut(s) 1121, 1881, 1908, 2331, 3768, 3870, 4195, 4604
MvnI CGCG 2 cut(s) 2706, 2883
MwoI GCNNNNNNNGC 7 cut(s) 284, 817, 1719, 2365, 3221, 3224, 4715
NciI CCSGG 5 cut(s) 822, 2858, 4676, 4745, 4746
NcoI CCATGG 2 cut(s) 633, 2765
NdeI CATATG 2 cut(s) 1244, 3484
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 5 cut(s) 894, 977, 1866, 3116, 3134
NsiI ATGCAT 2 cut(s) 524, 627
NspI RCATGY 8 cut(s) 220, 1216, 1261, 2188, 2359, 2383, 2623, 4105
OliI CACNNNNGTG 1 cut(s) 901
PaeI GCATGC 1 cut(s) 2623
PagI TCATGA 1 cut(s) 2313
PciI ACATGT 3 cut(s) 216, 2184, 2379
PciSI GCTCTTC 1 cut(s) 2537
PdmI GAANNNNTTC 2 cut(s) 2260, 3387
PflMI CCANNNNNTGG 2 cut(s) 1424, 3379
PfoI TCCNGGA 3 cut(s) 1906, 2329, 3766
PleI GAGTC 2 cut(s) 113, 2703
PpsI GAGTC 2 cut(s) 113, 2703
Ppu21I YACGTR 2 cut(s) 834, 2447
PpuMI RGGWCCY 4 cut(s) 24, 1010, 1249, 3748
PscI ACATGT 3 cut(s) 216, 2184, 2379
PsiI TTATAA 1 cut(s) 1706
Psp124BI GAGCTC 1 cut(s) 1432
Psp5II RGGWCCY 4 cut(s) 24, 1010, 1249, 3748
Psp6I CCWGG 8 cut(s) 1119, 1879, 1906, 2329, 3766, 3868, 4193, 4602
PspEI GGTNACC 1 cut(s) 3116
PspFI CCCAGC 3 cut(s) 811, 3077, 3815
PspGI CCWGG 8 cut(s) 1119, 1879, 1906, 2329, 3766, 3868, 4193, 4602
PspPPI RGGWCCY 4 cut(s) 24, 1010, 1249, 3748
PsrI GAACNNNNNNTAC 2 cut(s) 2932, 2964
PstNI CAGNNNCTG 2 cut(s) 1013, 1046
PsuI RGATCY 6 cut(s) 862, 874, 2063, 3538, 4529, 4627
PvuII CAGCTG 2 cut(s) 3218, 3227
RsaI GTAC 8 cut(s) 605, 685, 836, 1843, 2797, 3579, 4192, 4667
RsaNI GTAC 8 cut(s) 604, 684, 835, 1842, 2796, 3578, 4191, 4666
RseI CAYNNNNRTG 4 cut(s) 209, 221, 901, 1262
SacI GAGCTC 1 cut(s) 1432
SapI GCTCTTC 1 cut(s) 2537
SchI GAGTC 2 cut(s) 113, 2704
SduI GDGCHC 5 cut(s) 833, 1432, 2027, 2197, 2452
SfaNI GCATC 7 cut(s) 145, 238, 274, 1159, 2741, 3091, 4383
SfcI CTRYAG 3 cut(s) 1565, 2753, 3969
SinI GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1249, 1688, 3695, 3748
SmaI CCCGGG 1 cut(s) 4746
SmiMI CAYNNNNRTG 4 cut(s) 209, 221, 901, 1262
SmlI CTYRAG 3 cut(s) 1087, 1683, 2174
SmoI CTYRAG 3 cut(s) 1087, 1683, 2174
SphI GCATGC 1 cut(s) 2623
SsiI CCGC 8 cut(s) 251, 506, 845, 1816, 2704, 2962, 3825, 4826
SspI AATATT 3 cut(s) 1066, 2002, 2815
SspMI CTAG 9 cut(s) 866, 1094, 1796, 1961, 2372, 2864, 3065, 3609, 4855
SstI GAGCTC 1 cut(s) 1432
StyI CCWWGG 7 cut(s) 233, 633, 1862, 2765, 2839, 2863, 3691
TaaI ACNGT 7 cut(s) 1750, 2930, 3301, 3658, 3997, 4432, 4790
TaiI ACGT 5 cut(s) 836, 2449, 2950, 3153, 3669
TaqI TCGA 8 cut(s) 409, 1102, 1146, 1615, 2742, 4116, 4543, 4634
TatI WGTACW 4 cut(s) 1841, 2795, 3577, 4665
TauI GCSGC 1 cut(s) 848
TscAI CASTG 6 cut(s) 228, 402, 1525, 1755, 3028, 4128
TseFI GTSAC 5 cut(s) 894, 977, 1866, 3116, 3134
Tsp45I GTSAC 5 cut(s) 894, 977, 1866, 3116, 3134
TspGWI ACGGA 3 cut(s) 221, 2384, 4189
TspMI CCCGGG 1 cut(s) 4744
TspRI CASTG 6 cut(s) 228, 402, 1525, 1755, 3028, 4128
Van91I CCANNNNNTGG 2 cut(s) 1424, 3379
Vha464I CTTAAG 1 cut(s) 1087
VneI GTGCAC 2 cut(s) 2023, 2448
VpaK11BI GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1249, 1688, 3695, 3748
XagI CCTNNNNNAGG 2 cut(s) 149, 1683
XbaI TCTAGA 2 cut(s) 865, 3064
XceI RCATGY 8 cut(s) 220, 1216, 1261, 2188, 2359, 2383, 2623, 4105
XcmI CCANNNNNNNNNTGG 1 cut(s) 1626
XmaI CCCGGG 1 cut(s) 4744
XmaJI CCTAGG 1 cut(s) 2863
XmiI GTMKAC 1 cut(s) 2376
XmnI GAANNNNTTC 2 cut(s) 2260, 3387
XspI CTAG 9 cut(s) 866, 1094, 1796, 1961, 2372, 2864, 3065, 3609, 4855
Zsp2I ATGCAT 2 cut(s) 524, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.