FvH4_3g10240

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004532
Physical Location & Seq
Forward (+)
5965665 .. 5966482
818 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10240.t1

Sequence Viewer

Length: 651 bp
ATGGCAAACCAAATTTTGGTATTGACAGTTCTGGCCATGGCATGTACTCAGGTCATTGCCTTTGAGCCTAGTCCATTGCAAGATTTCTGCGTAGCTGACACTACTAGCTCAGTACCAAGAGTAAATGGCTTACCTTGCTTGGACTCTAAGCTAGCACAAGCTGAACATTTCTTCTTCGGAGGGCTTCACATTGCCGGAAACACCTCAAACCCTCTCGGAGTTAAAATCACCCCAGTCAATGTGGTTCAAATTCCAGGACTCAACACCCTCGGTATCTCACTTGCTCGCATTGACTATGCGCCGTGGGGCGTTACCCCTCCTCACACTCATCCTCGTGCCACCGAAATTCTAACAGTCTTGGAAGGCAGTGTTGCTGTAGGGTTTGTGACCTCTAACCCTGACAACAAGCTCATCTCAAAGGTGCTTAACAAGGGTGATGTGTTTGTGTTCCCAATTGGACTGGTTCACTACCAGCAAAATGTTGGTAATGGAACTGCCGTTTCACTCTCTTCTCTGAGCAGCCAAAACCCTGGAGTCATTACCATTGCTAATTCAGTTTTCGGAGCAAATCCCTCAATTTCGGATGATGTTCTGGCCAAGGCTTTTCAGGTGGACAAATCCATAATCAGTGATCTTCAAGCAAAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

217

Amino Acids

22.72

Weight (kDa)

5.88

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 63 - 207 8.7e-50 Cupin
Cupin_2 PF07883 97 - 168 2.3e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AcoI YGGCCR 2 cut(s) 33, 594
AcsI RAATTY 4 cut(s) 12, 249, 345, 644
AfaI GTAC 2 cut(s) 46, 114
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 248, 638
AjnI CCWGG 2 cut(s) 253, 529
AluBI AGCT 5 cut(s) 95, 108, 151, 161, 409
AluI AGCT 5 cut(s) 95, 108, 151, 161, 409
AoxI GGCC 2 cut(s) 33, 594
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 4 cut(s) 12, 249, 345, 644
AspLEI GCGC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 220, 446
AsuNHI GCTAGC 1 cut(s) 151
BalI TGGCCA 2 cut(s) 35, 596
BauI CACGAG 1 cut(s) 333
BbvI GCAGC 1 cut(s) 531
BceAI ACGGC 2 cut(s) 286, 482
BciT130I CCWGG 2 cut(s) 255, 531
BfaI CTAG 3 cut(s) 69, 105, 152
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 1 cut(s) 520
BlsI GCNGC 1 cut(s) 521
Bme1390I CCNGG 2 cut(s) 255, 531
BmrFI CCNGG 2 cut(s) 255, 531
BmrI ACTGGG 1 cut(s) 227
BmtI GCTAGC 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 552
BsaJI CCNNGG 5 cut(s) 36, 268, 302, 529, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 233, 465
Bse3DI GCAATG 4 cut(s) 54, 74, 189, 543
BseBI CCWGG 2 cut(s) 255, 531
BseDI CCNNGG 5 cut(s) 36, 268, 302, 529, 597
BseGI GGATG 2 cut(s) 328, 589
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 4 cut(s) 54, 74, 189, 543
BseMII CTCAG 3 cut(s) 62, 123, 506
BseNI ACTGG 2 cut(s) 233, 465
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 531
BshFI GGCC 2 cut(s) 35, 596
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 2 cut(s) 35, 596
Bsp143I GATC 1 cut(s) 631
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 2 cut(s) 35, 596
BspCNI CTCAG 3 cut(s) 61, 122, 507
BspOI GCTAGC 1 cut(s) 155
BsrDI GCAATG 4 cut(s) 54, 74, 189, 543
BsrI ACTGG 2 cut(s) 233, 465
BssECI CCNNGG 5 cut(s) 36, 268, 302, 529, 597
BssMI GATC 1 cut(s) 631
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 36, 597
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 255, 531
Bst4CI ACNGT 2 cut(s) 28, 355
Bst6I CTCTTC 1 cut(s) 514
BstC8I GCNNGC 2 cut(s) 153, 286
BstDEI CTNAG 4 cut(s) 48, 109, 147, 515
BstDSI CCRYGG 2 cut(s) 36, 302
BstF5I GGATG 2 cut(s) 328, 589
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 1 cut(s) 634
BstMBI GATC 1 cut(s) 631
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 2 cut(s) 255, 531
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 253, 529
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 531
BstXI CCANNNNNNTGG 1 cut(s) 530
BsuRI GGCC 2 cut(s) 35, 596
BtgI CCRYGG 2 cut(s) 36, 302
BtsCI GGATG 2 cut(s) 328, 589
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 373, 634
Cac8I GCNNGC 2 cut(s) 153, 286
CfoI GCGC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 45, 113
CviAII CATG 2 cut(s) 37, 42
CviQI GTAC 2 cut(s) 45, 113
DdeI CTNAG 4 cut(s) 48, 109, 147, 515
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
EaeI YGGCCR 2 cut(s) 33, 594
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
Eco130I CCWWGG 2 cut(s) 36, 597
EcoRII CCWGG 2 cut(s) 253, 529
EcoT14I CCWWGG 2 cut(s) 36, 597
ErhI CCWWGG 2 cut(s) 36, 597
FaeI CATG 2 cut(s) 40, 45
FaiI YATR 4 cut(s) 38, 43, 297, 623
FatI CATG 2 cut(s) 36, 41
Fnu4HI GCNGC 1 cut(s) 520
FokI GGATG 2 cut(s) 315, 596
Fsp4HI GCNGC 1 cut(s) 520
FspBI CTAG 3 cut(s) 69, 105, 152
GlaI GCGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 2 cut(s) 35, 596
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 40, 45
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 3 cut(s) 143, 258, 534
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 220, 446
Hpy166II GTNNAC 2 cut(s) 466, 613
Hpy188I TCNGA 5 cut(s) 179, 218, 516, 563, 583
Hpy8I GTNNAC 2 cut(s) 466, 613
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 2 cut(s) 28, 355
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 4 cut(s) 48, 109, 147, 515
Hsp92II CATG 2 cut(s) 40, 45
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 631
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 1 cut(s) 531
MaeI CTAG 3 cut(s) 69, 105, 152
MaeIII GTNAC 2 cut(s) 310, 385
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MboII GAAGA 4 cut(s) 163, 166, 501, 626
MfeI CAATTG 1 cut(s) 453
MlsI TGGCCA 2 cut(s) 35, 596
MluCI AATT 7 cut(s) 12, 249, 345, 453, 550, 576, 644
MluNI TGGCCA 2 cut(s) 35, 596
MlyI GAGTC 3 cut(s) 137, 252, 543
MnlI CCTC 9 cut(s) 173, 214, 222, 278, 327, 330, 342, 400, 583
Mox20I TGGCCA 2 cut(s) 35, 596
MscI TGGCCA 2 cut(s) 35, 596
MseI TTAA 2 cut(s) 222, 426
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 2 cut(s) 35, 596
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 255, 531
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 255, 531
MwoI GCNNNNNNNGC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 36
NdeII GATC 1 cut(s) 631
NheI GCTAGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 40, 45
NmuCI GTSAC 1 cut(s) 385
NspI RCATGY 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 1 cut(s) 521
PleI GAGTC 3 cut(s) 137, 252, 542
PpsI GAGTC 3 cut(s) 137, 252, 542
Psp6I CCWGG 2 cut(s) 253, 529
PspGI CCWGG 2 cut(s) 253, 529
PsrI GAACNNNNNNTAC 2 cut(s) 12, 44
RsaI GTAC 2 cut(s) 46, 114
RsaNI GTAC 2 cut(s) 45, 113
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 2 cut(s) 222, 426
SatI GCNGC 1 cut(s) 520
Sau3AI GATC 1 cut(s) 631
SchI GAGTC 3 cut(s) 137, 252, 543
ScrFI CCNGG 2 cut(s) 255, 531
SfcI CTRYAG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 7 cut(s) 12, 249, 345, 453, 550, 576, 644
SspMI CTAG 3 cut(s) 69, 105, 152
StyD4I CCNGG 2 cut(s) 253, 529
StyI CCWWGG 2 cut(s) 36, 597
TaaI ACNGT 2 cut(s) 28, 355
TasI AATT 7 cut(s) 12, 249, 345, 453, 550, 576, 644
TatI WGTACW 1 cut(s) 44
Tru1I TTAA 2 cut(s) 222, 426
Tru9I TTAA 2 cut(s) 222, 426
TscAI CASTG 2 cut(s) 373, 634
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 1 cut(s) 385
TspRI CASTG 2 cut(s) 373, 634
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 4 cut(s) 12, 249, 345, 644
XceI RCATGY 1 cut(s) 45
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XspI CTAG 3 cut(s) 69, 105, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.