Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Forward (+)

11335400 .. 11336216

Gene Structure 817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCAAACCAAATTTTGGTATTGACAGTCCTAGCCATGACATGTACTTTGGTCATTGCCTTTGAGCCTAGTCCACTGCAAGATTTCTGCGTAGCTGACACTACTAGCTCAGTACCAAGAGTAAATGGCCTACCTTGCTTAGACTCCAAGTTAGCACAAGCTGACCATTTCTTCTTCGGAGGGCTTCACCTTGCCGGAAACACCTCAAACCCTCTTGGAGTTAAAATCACTTCAGTCAATGTGGCTCAAATTCCAGGACTCAACACCCTCGGCATCTCACTTGCTCGTATTGACTATGCACCGTGGGGCGTTACCCCTCCTCACACTCATCCTCGTGCCACTGAAATTCTAACAGTCTTGGAAGGCCGTGTTGCTGTTGGTTTTGTGACCTCTAACCCCGACAACAAGCTCATCTCTAAGGTGCTCAACAAGGGTGATGTGTTTGTTTTCCCTGTTGGGCTAGTTCACTACCAGCAAAATGTGGGTAATGGAACTGCCGTTTCACTCTCTTCTCTGAGCAGCCAAAACCCTGGAGTCATCACTATTGCTAATTCAGTTTTTGGAGCGAATCCCTCAATTTCGGATGATGTTCTATCCAAGGCTTTTCAGGTGGACAAATCCATAATTAGTAATCTTCAAGCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

216

Amino Acids

22.75

Weight (kDa)

6.49

Isoelectric Point (pI)

25.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	65 - 207	4.3e-49	Cupin
Cupin_2	PF07883	97 - 168	1.1e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AcsI	RAATTY	4 cut(s)	12, 249, 345, 644
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	46, 114
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	253, 529
AluBI	AGCT	4 cut(s)	95, 108, 161, 409
AluI	AGCT	4 cut(s)	95, 108, 161, 409
Alw21I	GWGCWC	1 cut(s)	426
AoxI	GGCC	2 cut(s)	127, 364
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	4 cut(s)	12, 249, 345, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AsuHPI	GGTGA	2 cut(s)	179, 446
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	531
BceAI	ACGGC	2 cut(s)	351, 482
BciT130I	CCWGG	2 cut(s)	255, 531
BfaI	CTAG	4 cut(s)	32, 69, 105, 461
BisI	GCNGC	1 cut(s)	520
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	255, 531
BmrFI	CCNGG	2 cut(s)	255, 531
BmsI	GCATC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	552
BsaJI	CCNNGG	4 cut(s)	268, 302, 529, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	255, 531
BseDI	CCNNGG	4 cut(s)	268, 302, 529, 597
BseGI	GGATG	2 cut(s)	328, 589
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	123, 506
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	531
BshFI	GGCC	2 cut(s)	129, 366
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	2 cut(s)	129, 366
Bsp1286I	GDGCHC	1 cut(s)	426
BspANI	GGCC	2 cut(s)	129, 366
BspCNI	CTCAG	2 cut(s)	122, 507
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	268, 302, 529, 597
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	255, 531
Bst4CI	ACNGT	3 cut(s)	28, 303, 355
Bst6I	CTCTTC	1 cut(s)	514
BstDEI	CTNAG	4 cut(s)	109, 139, 417, 515
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	328, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	2 cut(s)	255, 531
BstNSI	RCATGY	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	253, 529
BstV1I	GCAGC	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	129, 366
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	328, 589
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	74, 339
Csp6I	GTAC	2 cut(s)	45, 113
CviAII	CATG	2 cut(s)	37, 42
CviQI	GTAC	2 cut(s)	45, 113
DdeI	CTNAG	4 cut(s)	109, 139, 417, 515
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	597
Eco57I	CTGAAG	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	253, 529
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	2 cut(s)	40, 45
FaiI	YATR	4 cut(s)	38, 43, 297, 623
FatI	CATG	2 cut(s)	36, 41
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	2 cut(s)	315, 596
Fsp4HI	GCNGC	1 cut(s)	520
FspBI	CTAG	4 cut(s)	32, 69, 105, 461
GluI	GCNGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	129, 366
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	2 cut(s)	40, 45
HinfI	GANTC	4 cut(s)	143, 258, 534, 568
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	179, 446
Hpy166II	GTNNAC	3 cut(s)	74, 466, 613
Hpy188I	TCNGA	3 cut(s)	179, 516, 583
Hpy8I	GTNNAC	3 cut(s)	74, 466, 613
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	3 cut(s)	28, 303, 355
HpyCH4V	TGCA	2 cut(s)	79, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	4 cut(s)	109, 139, 417, 515
Hsp92II	CATG	2 cut(s)	40, 45
LmnI	GCTCC	1 cut(s)	563
LpnPI	CCDG	8 cut(s)	208, 240, 267, 465, 485, 516, 543, 593
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	4 cut(s)	32, 69, 105, 461
MaeIII	GTNAC	2 cut(s)	310, 385
MboII	GAAGA	4 cut(s)	163, 166, 501, 626
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	7 cut(s)	12, 249, 345, 550, 576, 624, 644
MlyI	GAGTC	3 cut(s)	137, 252, 543
MnlI	CCTC	9 cut(s)	173, 214, 222, 278, 327, 330, 342, 400, 583
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	255, 531
MvaI	CCWGG	2 cut(s)	255, 531
MwoI	GCNNNNNNNGC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	40, 45
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	45
PciI	ACATGT	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	3 cut(s)	137, 252, 542
PpsI	GAGTC	3 cut(s)	137, 252, 542
PscI	ACATGT	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	253, 529
PspGI	CCWGG	2 cut(s)	253, 529
RsaI	GTAC	2 cut(s)	46, 114
RsaNI	GTAC	2 cut(s)	45, 113
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	520
SchI	GAGTC	3 cut(s)	137, 252, 543
ScrFI	CCNGG	2 cut(s)	255, 531
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	7 cut(s)	12, 249, 345, 550, 576, 624, 644
SspMI	CTAG	4 cut(s)	32, 69, 105, 461
StyD4I	CCNGG	2 cut(s)	253, 529
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	28, 303, 355
TasI	AATT	7 cut(s)	12, 249, 345, 550, 576, 624, 644
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	81, 346
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	385
TspRI	CASTG	2 cut(s)	81, 346
Van91I	CCANNNNNTGG	1 cut(s)	16
XapI	RAATTY	4 cut(s)	12, 249, 345, 644
XceI	RCATGY	1 cut(s)	45
XspI	CTAG	4 cut(s)	32, 69, 105, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.