Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Forward (+)

4566160 .. 4566951

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G091500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAAACCAAATTCTTCTGTTGACTACTTTCCTAGCTATGACATGTGCTCTGGTCATTGCTTTTGAGCCTAGTCCTTTGCAAGATTTCTGTGTTGCTGACACTACTAGCTCAGTGACCAGAGTGAATGGGCTACCCTGTTTGGACTCCAAGCTAGCACAGGCTGATCATTTCTTCTTCAGTGGACTTCACATCCCAGGCAACACCTCAAACCCTGTTGGTGGAAAAGTCACCCCAGTCAATGTGGTTCAAATTCCAGGACTCAACACCCTCGGCATCTCTCTGGCTCGCATCGACTATGCGCAATGGGGTGTTATCCCTCCCCACACTCATCCCCGTGCCACCGAGATTTTGACCGTCCTAGAAGGCAGCCTCTATGTTGGCTTTGTGACCTCAAACCCTGACAACAAGCTCATCTCAAAGGTCCTTTACAAGGGTGATGTGTTTGTGTTCCCTGTCGGGCTAGTTCACTTCCAGCAGAATGTGGGAAAAGGAAATGCCGTTTCACTCTCTTCTTTGAGCAGCCAAAACCCTGGAGTCAACACCATTGCCAATGCTGTTTTTGGAGCCAATCCTTCAATCTCAGATGATATTCTGGCCAAGTCCTTCCAGGTGGACAAAACTGTAATTAGCAGTCTTCAGGCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

23.02

Weight (kDa)

6.49

Isoelectric Point (pI)

24.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	3 cut(s)	12, 252, 647
AcuI	CTGAAG	2 cut(s)	163, 623
AfiI	CCNNNNNNNGG	2 cut(s)	221, 433
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	251, 579
AjnI	CCWGG	4 cut(s)	196, 256, 532, 609
AluBI	AGCT	4 cut(s)	38, 111, 154, 412
AluI	AGCT	4 cut(s)	38, 111, 154, 412
Alw21I	GWGCWC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	369, 522
ApoI	RAATTY	3 cut(s)	12, 252, 647
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	223, 449
AsuNHI	GCTAGC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	381, 534
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	4 cut(s)	198, 258, 534, 611
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
BisI	GCNGC	2 cut(s)	370, 523
BlsI	GCNGC	2 cut(s)	371, 524
Bme1390I	CCNGG	4 cut(s)	198, 258, 534, 611
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	4 cut(s)	198, 258, 534, 611
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	285, 300
BmtI	GCTAGC	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	196, 271, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 433
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	3 cut(s)	57, 311, 546
BseBI	CCWGG	4 cut(s)	198, 258, 534, 611
BseDI	CCNNGG	3 cut(s)	196, 271, 532
BseGI	GGATG	2 cut(s)	192, 331
BseLI	CCNNNNNNNGG	2 cut(s)	221, 433
BseMI	GCAATG	3 cut(s)	57, 311, 546
BseMII	CTCAG	2 cut(s)	126, 597
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	381, 534
BshFI	GGCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	221, 433
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	2 cut(s)	125, 596
BspLI	GGNNCC	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	158
BsrDI	GCAATG	3 cut(s)	57, 311, 546
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	196, 271, 532
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	4 cut(s)	198, 258, 534, 611
Bst4CI	ACNGT	2 cut(s)	358, 625
Bst6I	CTCTTC	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	156, 289
BstDEI	CTNAG	2 cut(s)	112, 583
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	192, 331
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	4 cut(s)	198, 258, 534, 611
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	4 cut(s)	196, 256, 532, 609
BstV1I	GCAGC	2 cut(s)	381, 534
BstV2I	GAAGAC	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	192, 331
BtsIMutI	CAGTG	2 cut(s)	120, 187
Cac8I	GCNNGC	2 cut(s)	156, 289
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	424
CviAII	CATG	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	112, 583
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	163, 623
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	4 cut(s)	196, 256, 532, 609
FaeI	CATG	1 cut(s)	48
FaiI	YATR	4 cut(s)	41, 46, 300, 378
FatI	CATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	370, 523
FokI	GGATG	2 cut(s)	179, 318
Fsp4HI	GCNGC	2 cut(s)	370, 523
FspBI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	370, 523
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	2 cut(s)	24, 541
HindII	GTYRAC	2 cut(s)	24, 541
HinfI	GANTC	3 cut(s)	146, 261, 537
HphI	GGTGA	2 cut(s)	223, 449
Hpy166II	GTNNAC	5 cut(s)	24, 185, 469, 541, 616
Hpy188I	TCNGA	1 cut(s)	586
Hpy8I	GTNNAC	5 cut(s)	24, 185, 469, 541, 616
HpyAV	CCTTC	3 cut(s)	359, 585, 616
HpyCH4III	ACNGT	2 cut(s)	358, 625
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	112, 583
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	566
Lsp1109I	GCAGC	2 cut(s)	381, 534
LweI	GCATC	2 cut(s)	285, 300
MaeI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
MaeIII	GTNAC	3 cut(s)	115, 229, 388
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	5 cut(s)	8, 166, 169, 504, 629
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	4 cut(s)	12, 252, 627, 647
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	3 cut(s)	140, 255, 546
MnlI	CCTC	5 cut(s)	217, 281, 330, 383, 403
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	599
MspR9I	CCNGG	4 cut(s)	198, 258, 534, 611
MvaI	CCWGG	4 cut(s)	198, 258, 534, 611
NdeII	GATC	1 cut(s)	166
NheI	GCTAGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	3 cut(s)	115, 229, 388
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	48
PciI	ACATGT	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	371, 524
PleI	GAGTC	3 cut(s)	140, 255, 545
PpsI	GAGTC	3 cut(s)	140, 255, 545
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	4 cut(s)	196, 256, 532, 609
PspGI	CCWGG	4 cut(s)	196, 256, 532, 609
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	336
SatI	GCNGC	2 cut(s)	370, 523
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	3 cut(s)	140, 255, 546
ScrFI	CCNGG	4 cut(s)	198, 258, 534, 611
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	8 cut(s)	40, 113, 156, 209, 395, 414, 426, 615
SfaNI	GCATC	2 cut(s)	285, 300
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	4 cut(s)	12, 252, 627, 647
SspMI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
StyD4I	CCNGG	4 cut(s)	196, 256, 532, 609
TaaI	ACNGT	2 cut(s)	358, 625
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	12, 252, 627, 647
TscAI	CASTG	2 cut(s)	120, 187
TseFI	GTSAC	3 cut(s)	115, 229, 388
TseI	GCWGC	2 cut(s)	369, 522
Tsp45I	GTSAC	3 cut(s)	115, 229, 388
TspRI	CASTG	2 cut(s)	120, 187
VpaK11BI	GGWCC	1 cut(s)	424
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	3 cut(s)	12, 252, 647
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.