Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001235.1

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Reverse (-)

120335 .. 122802

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001235.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgtgtcaaggtggacaaagtagggacgtcctgaataagcaggttaaagcagcaatggaatcaaagccgtcgcgaatttcagtgatacaaagagcagaggaaatttctcgactcgatgaaaacataaaggtacttggagtagagatagaggaggaagagctaccaagagtaaatggcctaccttgcttagactccaagttagcacaagctgaccatttcttcttcggagggcttcaccttgccggaaacacctcaaaccctcttggagttaaaatcacttcagtcaatgtggctcaaattccaggactcaacaccctcggcatctcacttgctcgtattgactatgcaccgtggggcgttacccctcctcacactcatccccgtgccactgaaattctaacagtcttggaaggccgtgttgctgttggttttgtgacctctaaccccgacaacaagctcatctctaaggtgctcaacaagggtgatgtgtttgttttccctgttgggctagttcactaccagcaaaatgtgggtaatggaactgccgtttcactctcttctctaagcagccaaaaccctggagtcatcactattgctaattcagtttttggagcgaatccctcaatttcggatgatgttctagccaaggcttttcaggtggacaaatccataattagtaatcttcaagcaaaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

232

Amino Acids

24.78

Weight (kDa)

6.52

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	31
AccII	CGCG	1 cut(s)	73
AcsI	RAATTY	5 cut(s)	75, 102, 297, 393, 692
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	301, 577
AluBI	AGCT	3 cut(s)	160, 209, 457
AluI	AGCT	3 cut(s)	160, 209, 457
Alw21I	GWGCWC	1 cut(s)	474
AoxI	GGCC	2 cut(s)	175, 412
ApeKI	GCWGC	2 cut(s)	50, 567
ApoI	RAATTY	5 cut(s)	75, 102, 297, 393, 692
AsuHPI	GGTGA	2 cut(s)	227, 494
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	62, 579
BceAI	ACGGC	3 cut(s)	52, 399, 530
BciT130I	CCWGG	2 cut(s)	303, 579
BfaI	CTAG	2 cut(s)	509, 641
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	51, 568
BlsI	GCNGC	2 cut(s)	52, 569
Bme1390I	CCNGG	2 cut(s)	303, 579
BmrFI	CCNGG	2 cut(s)	303, 579
BmsI	GCATC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	316, 350, 577, 645
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	303, 579
BseDI	CCNNGG	4 cut(s)	316, 350, 577, 645
BseGI	GGATG	2 cut(s)	376, 637
BseMI	GCAATG	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	164, 357
BseXI	GCAGC	2 cut(s)	62, 579
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	177, 414
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	177, 414
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp68I	TCGCGA	1 cut(s)	73
BspANI	GGCC	2 cut(s)	177, 414
BspFNI	CGCG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	4 cut(s)	316, 350, 577, 645
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	303, 579
Bst4CI	ACNGT	2 cut(s)	351, 403
Bst6I	CTCTTC	2 cut(s)	150, 562
BstACI	GRCGYC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	187, 465, 563
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	376, 637
BstFNI	CGCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	2 cut(s)	303, 579
BstSCI	CCNGG	2 cut(s)	301, 577
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	62, 579
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	177, 414
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	376, 637
BtsIMutI	CAGTG	2 cut(s)	87, 387
BtuMI	TCGCGA	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	131
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	3 cut(s)	187, 465, 563
Eam1104I	CTCTTC	2 cut(s)	150, 562
EarI	CTCTTC	2 cut(s)	150, 562
Eco130I	CCWWGG	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	301, 577
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
FaiI	YATR	3 cut(s)	125, 345, 671
FaqI	GGGAC	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	51, 568
FokI	GGATG	2 cut(s)	363, 644
Fsp4HI	GCNGC	2 cut(s)	51, 568
FspBI	CTAG	2 cut(s)	509, 641
GluI	GCNGC	2 cut(s)	51, 568
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	2 cut(s)	177, 414
HapII	CCGG	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	27
HinfI	GANTC	6 cut(s)	59, 111, 191, 306, 582, 616
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	227, 494
Hpy166II	GTNNAC	3 cut(s)	14, 514, 661
Hpy188I	TCNGA	2 cut(s)	227, 631
Hpy188III	TCNNGA	3 cut(s)	31, 72, 108
Hpy8I	GTNNAC	3 cut(s)	14, 514, 661
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	351, 403
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	3 cut(s)	187, 465, 563
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	27
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	2 cut(s)	62, 579
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	2 cut(s)	509, 641
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	358, 433
MboII	GAAGA	5 cut(s)	167, 211, 214, 549, 674
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	8 cut(s)	75, 102, 297, 393, 598, 624, 672, 692
MlyI	GAGTC	4 cut(s)	105, 185, 300, 591
MseI	TTAA	2 cut(s)	45, 270
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	303, 579
MvaI	CCWGG	2 cut(s)	303, 579
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	433
NruI	TCGCGA	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	59, 616
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	52, 569
PleI	GAGTC	4 cut(s)	105, 185, 300, 590
PpsI	GAGTC	4 cut(s)	105, 185, 300, 590
Psp6I	CCWGG	2 cut(s)	301, 577
PspGI	CCWGG	2 cut(s)	301, 577
RruI	TCGCGA	1 cut(s)	73
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	45, 270
SatI	GCNGC	2 cut(s)	51, 568
SchI	GAGTC	4 cut(s)	105, 185, 300, 591
ScrFI	CCNGG	2 cut(s)	303, 579
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	8 cut(s)	75, 102, 297, 393, 598, 624, 672, 692
SspMI	CTAG	2 cut(s)	509, 641
StyD4I	CCNGG	2 cut(s)	301, 577
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	351, 403
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	109, 114
TasI	AATT	8 cut(s)	75, 102, 297, 393, 598, 624, 672, 692
TfiI	GAWTC	2 cut(s)	59, 616
Tru1I	TTAA	2 cut(s)	45, 270
Tru9I	TTAA	2 cut(s)	45, 270
TscAI	CASTG	2 cut(s)	87, 394
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	50, 567
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	87, 394
XapI	RAATTY	5 cut(s)	75, 102, 297, 393, 692
XspI	CTAG	2 cut(s)	509, 641
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.