Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Reverse (-)

34493212 .. 34494466

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1251900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAAGCCAAATACTGCTATTGACTACTCTCCTAGCCATAACATGTTCTCTGGTTGTTGCTTTTGAGCCTAGCCCGTTGCAGGATTTCTGCGTTGCTAATGCTACTAGCCTAGCATTTCTTCTTCAGTGGACTTCACATCCCGCGCACACTTCAAACCCTGTTGGTGGAAAAGTCACCCCTGTCAATGTGGCTCAAATTCCAGGGCTCAACACCCTCGGCATCTCACTCGCTCGCATCAACTACGCACCAATGGGTGTTATCCAACGCCACACTCATCCTCGTGCCACCGAGATTTTGACAGTCTTAAAAGGCAAGCTCAATGTTGGCTTTGTGACCTCAAGCCCCGAGAACAAGCTCATCTCGAAGAAGGTCCTTAAGAAGGGTGATGTGTTTGTTTTCCCTGTTGGGCTAGTTCACCATCAGCAAAACCTGGGTTCTGAAACTGCCATTGCTCTATCTTCTTTGAGCAGCCAAAACCCTGAAGTCTACATCATTTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0044464 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

169

Amino Acids

17.93

Weight (kDa)

9.3

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	47 - 164	2.4e-38	Cupin
Cupin_2	PF07883	80 - 154	9.4e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	489
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	2 cut(s)	110, 504
AfiI	CCNNNNNNNGG	3 cut(s)	82, 167, 382
AflII	CTTAAG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	202, 432
AluBI	AGCT	2 cut(s)	319, 358
AluI	AGCT	2 cut(s)	319, 358
Ama87I	CYCGRG	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	3 cut(s)	169, 398, 410
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	204, 434
BfaI	CTAG	5 cut(s)	35, 72, 108, 113, 413
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	473
Bme1390I	CCNGG	2 cut(s)	204, 434
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	2 cut(s)	204, 434
BmsI	GCATC	2 cut(s)	231, 246
BpuEI	CTTGAG	1 cut(s)	325
BsaJI	CCNNGG	3 cut(s)	203, 217, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 167, 382
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	204, 434
BseDI	CCNNGG	3 cut(s)	203, 217, 433
BseGI	GGATG	2 cut(s)	139, 277
BseLI	CCNNNNNNNGG	3 cut(s)	82, 167, 382
BseMI	GCAATG	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	82, 167, 382
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	203, 217, 433
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	204, 434
Bst4CI	ACNGT	1 cut(s)	304
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	7, 235, 317
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	139, 277
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	148
BstNI	CCWGG	2 cut(s)	204, 434
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	202, 432
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	139, 277
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	3 cut(s)	7, 235, 317
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	110, 504
Eco88I	CYCGRG	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	202, 432
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	48
FaiI	YATR	2 cut(s)	41, 46
FatI	CATG	1 cut(s)	44
FauI	CCCGC	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	472
FokI	GGATG	2 cut(s)	126, 264
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	472
FspBI	CTAG	5 cut(s)	35, 72, 108, 113, 413
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HphI	GGTGA	3 cut(s)	169, 398, 410
Hpy166II	GTNNAC	3 cut(s)	132, 418, 490
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	3 cut(s)	132, 418, 490
HpyAV	CCTTC	2 cut(s)	364, 376
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	2 cut(s)	231, 246
MaeI	CTAG	5 cut(s)	35, 72, 108, 113, 413
MaeIII	GTNAC	2 cut(s)	175, 334
MboII	GAAGA	4 cut(s)	113, 116, 379, 453
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	198, 502
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	227, 291, 349
MseI	TTAA	3 cut(s)	308, 378, 505
MslI	CAYNNNNRTG	1 cut(s)	282
MspCI	CTTAAG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	204, 434
MvaI	CCWGG	2 cut(s)	204, 434
MvnI	CGCG	1 cut(s)	146
NlaIII	CATG	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	175, 334
NspI	RCATGY	1 cut(s)	48
PciI	ACATGT	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	373
PscI	ACATGT	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	202, 432
PspGI	CCWGG	2 cut(s)	202, 432
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	308, 378, 505
SatI	GCNGC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	204, 434
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	5 cut(s)	321, 341, 360, 375, 435
SfaNI	GCATC	2 cut(s)	231, 246
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	340, 377
SmoI	CTYRAG	2 cut(s)	340, 377
Sse9I	AATT	2 cut(s)	198, 502
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	5 cut(s)	35, 72, 108, 113, 413
StyD4I	CCNGG	2 cut(s)	202, 432
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	365
TasI	AATT	2 cut(s)	198, 502
Tru1I	TTAA	3 cut(s)	308, 378, 505
Tru9I	TTAA	3 cut(s)	308, 378, 505
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	2 cut(s)	175, 334
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	2 cut(s)	175, 334
TspRI	CASTG	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	5 cut(s)	35, 72, 108, 113, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.