Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Reverse (-)

9412824 .. 9413386

Gene Structure 563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1081700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGAGTAAATGGTTTTCCATGGTTGGACTCCAAGCTAGCGACAGCTGAACATTTCTTCTTCAGTAGATTTCACATCCCCGACAACACCTCAAACCCTGTTGGTGGAAAAGTTACCCCTGTCAATGTGGGTCAAATCCCAGGTCTCAACACTCTCGGCATCTCACTCGCTCGCATCGACTACGCACCATGGGATGCAGCCTTTGTGACATCAAACCCCGACAACAAGCTCATTTCAAATGTGCTTAACAAGGGTGATGTGTTTGTGTTCCCTGTTGGACTAGTTCACTATCAACAAAATGCGGGGAATGGAATTGCCATTTCACTCTCTTCTCTGAGTAGCCAAAACCCAGGAGTCAACACCATTGCTAATGCTGTGTTTGGATTCAATCCCGTAATTTCAGAAGATGTTCTGGCTAAATCTTTCCAGCTCCAGGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0044464 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

148

Amino Acids

15.81

Weight (kDa)

6.24

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	26 - 63	5e-08	Cupin
Cupin_1	PF00190	67 - 146	2.2e-19	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	104, 433
AgsI	TTSAA	2 cut(s)	237, 388
AhlI	ACTAGT	1 cut(s)	280
AjnI	CCWGG	3 cut(s)	139, 349, 432
AluBI	AGCT	4 cut(s)	37, 47, 229, 430
AluI	AGCT	4 cut(s)	37, 47, 229, 430
Alw26I	GTCTC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp700I	GAANNNNTTC	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	266
AsuNHI	GCTAGC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	3 cut(s)	141, 351, 434
BcoDI	GTCTC	1 cut(s)	149
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	2 cut(s)	38, 281
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	141, 351, 434
BmrFI	CCNGG	3 cut(s)	141, 351, 434
BmsI	GCATC	3 cut(s)	168, 183, 184
BmtI	GCTAGC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	5 cut(s)	20, 139, 188, 349, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 433
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	141, 351, 434
BseDI	CCNNGG	5 cut(s)	20, 139, 188, 349, 433
BseGI	GGATG	3 cut(s)	75, 199, 443
BseLI	CCNNNNNNNGG	2 cut(s)	104, 433
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	104, 433
BsmAI	GTCTC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	149
Bsp19I	CCATGG	2 cut(s)	20, 188
BspACI	CCGC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	327
BspOI	GCTAGC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	5 cut(s)	20, 139, 188, 349, 433
BssT1I	CCWWGG	2 cut(s)	20, 188
Bst2UI	CCWGG	3 cut(s)	141, 351, 434
Bst6I	CTCTTC	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	39, 172
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	2 cut(s)	20, 188
BstF5I	GGATG	3 cut(s)	75, 199, 443
BstMAI	GTCTC	1 cut(s)	149
BstNI	CCWGG	3 cut(s)	141, 351, 434
BstSCI	CCNGG	3 cut(s)	139, 349, 432
BstV1I	GCAGC	1 cut(s)	209
BtgI	CCRYGG	2 cut(s)	20, 188
BtsCI	GGATG	3 cut(s)	75, 199, 443
Cac8I	GCNNGC	2 cut(s)	39, 172
CviAII	CATG	2 cut(s)	21, 189
CviJI	RGCY	7 cut(s)	37, 47, 200, 229, 342, 416, 430
CviKI_1	RGCY	7 cut(s)	37, 47, 200, 229, 342, 416, 430
DdeI	CTNAG	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	20, 188
Eco31I	GGTCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	139, 349, 432
EcoT14I	CCWWGG	2 cut(s)	20, 188
ErhI	CCWWGG	2 cut(s)	20, 188
FaeI	CATG	2 cut(s)	24, 192
FaiI	YATR	2 cut(s)	22, 190
FatI	CATG	2 cut(s)	20, 188
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	62, 206
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	38, 281
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	416
Hin1II	CATG	2 cut(s)	24, 192
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	29, 354, 384
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	286, 358
Hpy188I	TCNGA	2 cut(s)	336, 403
Hpy8I	GTNNAC	2 cut(s)	286, 358
HpyCH4V	TGCA	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	24, 192
LmnI	GCTCC	1 cut(s)	435
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	3 cut(s)	168, 183, 184
MaeI	CTAG	2 cut(s)	38, 281
MaeIII	GTNAC	2 cut(s)	112, 205
MboII	GAAGA	4 cut(s)	49, 52, 321, 416
MluCI	AATT	2 cut(s)	312, 396
MlyI	GAGTC	2 cut(s)	23, 363
MmeI	TCCRAC	2 cut(s)	6, 256
MnlI	CCTC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	141, 351, 434
MvaI	CCWGG	3 cut(s)	141, 351, 434
NcoI	CCATGG	2 cut(s)	20, 188
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	24, 192
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	2 cut(s)	23, 362
PpsI	GAGTC	2 cut(s)	23, 362
Psp6I	CCWGG	3 cut(s)	139, 349, 432
PspGI	CCWGG	3 cut(s)	139, 349, 432
PvuII	CAGCTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	198
SchI	GAGTC	2 cut(s)	23, 363
ScrFI	CCNGG	3 cut(s)	141, 351, 434
SetI	ASST	6 cut(s)	39, 49, 92, 145, 231, 432
SfaNI	GCATC	3 cut(s)	168, 183, 184
SpeI	ACTAGT	1 cut(s)	280
Sse9I	AATT	2 cut(s)	312, 396
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	2 cut(s)	38, 281
StyD4I	CCNGG	3 cut(s)	139, 349, 432
StyI	CCWWGG	2 cut(s)	20, 188
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	312, 396
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	2 cut(s)	38, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.