Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Reverse (-)

12073993 .. 12075260

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29772

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCCGGAAACACCACAAACCCTCTTGGCGTTAAAATTACCCCAGTCAATGTGGCTCAAATTCCAGGACTCAACACCCTTGGCATCTCACTGGCTCGAATTGACTATGCACCAGGTGGTGTTACCCCTCCCCACACTCATCCTCGTGCCACTGAGATTCTGACAGTTGTGAAAGGCAAGCTCTATGTTGGCTTTGTGACCTCCAACCCAGAGAATAAGCTCATCTCAAAGGTCCTCAAGAAGGGTGATGTGTTTGTTTTCCCTATTGGACTAGTTCACTTCCAGCAAAATCTGGGATCTGGAACAGCCATTTCACAGTCTTCTCTGAGCAGCCAAAACCCTGGAGTCATCACTATTGCTAACTCAGTTTTTGGACCCAATCCCTCAATTTCAGATGATGTTCTGGCCAAGGCTTTCCAAGTTGACAAATCCATTATTAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0044464 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

148

Amino Acids

15.49

Weight (kDa)

9.57

Isoelectric Point (pI)

22.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	2 - 144	3.2e-50	Cupin
Cupin_2	PF07883	34 - 102	4.6e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	3 cut(s)	64, 112, 340
AluBI	AGCT	2 cut(s)	181, 220
AluI	AGCT	2 cut(s)	181, 220
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	232, 374
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	232, 374
BalI	TGGCCA	1 cut(s)	407
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	342
BciT130I	CCWGG	3 cut(s)	66, 114, 342
BcnI	CCSGG	1 cut(s)	6
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	4 cut(s)	6, 66, 114, 342
Bme18I	GGWCC	2 cut(s)	232, 374
BmgT120I	GGNCC	2 cut(s)	232, 374
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	4 cut(s)	6, 66, 114, 342
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	79, 340, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	44, 96
BseBI	CCWGG	3 cut(s)	66, 114, 342
BseDI	CCNNGG	3 cut(s)	79, 340, 408
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	3 cut(s)	144, 317, 378
BseNI	ACTGG	2 cut(s)	44, 96
BseXI	GCAGC	1 cut(s)	342
BshFI	GGCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	241
BsnI	GGCC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	3 cut(s)	145, 318, 377
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	44, 96
BssECI	CCNNGG	3 cut(s)	79, 340, 408
BssMI	GATC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	79, 408
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	3 cut(s)	66, 114, 342
Bst4CI	ACNGT	2 cut(s)	166, 318
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	153, 326, 364
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstNI	CCWGG	3 cut(s)	66, 114, 342
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	4 cut(s)	4, 64, 112, 340
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	89, 150
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	232, 374
CsiI	ACCWGGT	1 cut(s)	112
CviAII	CATG	1 cut(s)	442
CviJI	RGCY	9 cut(s)	56, 95, 181, 192, 220, 308, 333, 407, 413
CviKI_1	RGCY	9 cut(s)	56, 95, 181, 192, 220, 308, 333, 407, 413
DdeI	CTNAG	3 cut(s)	153, 326, 364
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	79, 408
Eco47I	GGWCC	2 cut(s)	232, 374
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	3 cut(s)	64, 112, 340
EcoT14I	CCWWGG	2 cut(s)	79, 408
ErhI	CCWWGG	2 cut(s)	79, 408
FaeI	CATG	1 cut(s)	445
FaiI	YATR	3 cut(s)	108, 186, 443
FatI	CATG	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	69, 157, 345
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	277, 424
Hpy188I	TCNGA	3 cut(s)	162, 327, 394
Hpy188III	TCNNGA	2 cut(s)	238, 300
Hpy8I	GTNNAC	2 cut(s)	277, 424
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	166, 318
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	153, 326, 364
Hsp92II	CATG	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	296
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	93
MabI	ACCWGGT	1 cut(s)	112
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	121, 196
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	4 cut(s)	36, 60, 99, 387
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	63, 354
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	33, 138, 153, 211, 245, 394
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	407
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	4 cut(s)	6, 66, 114, 342
MvaI	CCWGG	3 cut(s)	66, 114, 342
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	2 cut(s)	63, 353
PpsI	GAGTC	2 cut(s)	63, 353
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	3 cut(s)	64, 112, 340
PspGI	CCWGG	3 cut(s)	64, 112, 340
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	232, 374
PspPPI	RGGWCCY	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	2 cut(s)	232, 374
SchI	GAGTC	2 cut(s)	63, 354
ScrFI	CCNGG	4 cut(s)	6, 66, 114, 342
SetI	ASST	5 cut(s)	118, 183, 203, 222, 234
SexAI	ACCWGGT	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	2 cut(s)	232, 374
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	4 cut(s)	36, 60, 99, 387
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	4 cut(s)	4, 64, 112, 340
StyI	CCWWGG	2 cut(s)	79, 408
TaaI	ACNGT	2 cut(s)	166, 318
TaqI	TCGA	1 cut(s)	97
TasI	AATT	4 cut(s)	36, 60, 99, 387
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	96, 157
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	1 cut(s)	196
TspRI	CASTG	2 cut(s)	96, 157
VpaK11BI	GGWCC	2 cut(s)	232, 374
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	60
XceI	RCATGY	1 cut(s)	445
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.