Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007392.1

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Forward (+)

26999 .. 27712

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007392.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgacatgttctctggtcattgcattcgagcctaaaccactgcaagatttctgcattgctgacactactagctcagtaataagagtaaatgggttcccttgcttggactccaagctagcacaagctgaccatttctccttcggaggacttcacatgcccggaaacaccacaaaccctcttggcgttaaaattaccccagtcaatgtggctcaaattccaggactcaacacccttggcatctcactggctcgaattgactatgcaccagggggtgttacccctccccacactcatcctcgtgccactgagattctgacagttgtgaaaggcaagctctatgttggctttgtgacctccaacccagagaataagctcatctcaaaggtcctcaagaagggtgatgtgtttgtgttccctattggactagttcacttccagcaaaatctgggatctggaacagccatttcacagtcttctctgagcagccaaaaccctggagtcatcactattgctaactcagtttttggacccaatccctcaatttcagatgatgttctggccaaggctttccaagttgacaaatccattattagcagtctgcaggcaaaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0044464 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

204

Amino Acids

21.54

Weight (kDa)

8.81

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	457
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	213, 608
AfiI	CCNNNNNNNGG	2 cut(s)	103, 394
AflIII	ACRYGT	1 cut(s)	5
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	217, 265, 493
AluBI	AGCT	5 cut(s)	72, 115, 125, 334, 373
AluI	AGCT	5 cut(s)	72, 115, 125, 334, 373
AlwI	GGATC	1 cut(s)	457
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	483
ApoI	RAATTY	2 cut(s)	213, 608
AspS9I	GGNCC	2 cut(s)	385, 527
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	410
AsuNHI	GCTAGC	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	385, 527
BalI	TGGCCA	1 cut(s)	560
BauI	CACGAG	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	495
BciT130I	CCWGG	3 cut(s)	219, 267, 495
BcnI	CCSGG	1 cut(s)	159
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	3 cut(s)	69, 116, 425
BfmI	CTRYAG	1 cut(s)	599
BisI	GCNGC	1 cut(s)	484
BlsI	GCNGC	1 cut(s)	485
Bme1390I	CCNGG	4 cut(s)	159, 219, 267, 495
Bme18I	GGWCC	2 cut(s)	385, 527
BmgT120I	GGNCC	2 cut(s)	385, 527
BmiI	GGNNCC	2 cut(s)	95, 529
BmrFI	CCNGG	4 cut(s)	159, 219, 267, 495
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	246
BmtI	GCTAGC	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	232, 266, 493, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 394
Bse1I	ACTGG	2 cut(s)	197, 249
Bse3DI	GCAATG	2 cut(s)	18, 54
BseBI	CCWGG	3 cut(s)	219, 267, 495
BseDI	CCNNGG	4 cut(s)	232, 266, 493, 561
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	103, 394
BseMI	GCAATG	2 cut(s)	18, 54
BseMII	CTCAG	4 cut(s)	87, 297, 470, 531
BseNI	ACTGG	2 cut(s)	197, 249
BseXI	GCAGC	1 cut(s)	495
BshFI	GGCC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	103, 394
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	560
Bsp143I	GATC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	4 cut(s)	86, 298, 471, 530
BspLI	GGNNCC	2 cut(s)	95, 529
BspMAI	CTGCAG	1 cut(s)	603
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	457
BsrDI	GCAATG	2 cut(s)	18, 54
BsrI	ACTGG	2 cut(s)	197, 249
BssECI	CCNNGG	4 cut(s)	232, 266, 493, 561
BssMI	GATC	1 cut(s)	449
BssSI	CACGAG	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	232, 561
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	3 cut(s)	219, 267, 495
Bst4CI	ACNGT	2 cut(s)	319, 471
BstC8I	GCNNGC	3 cut(s)	117, 332, 603
BstDEI	CTNAG	4 cut(s)	73, 306, 479, 517
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	449
BstNI	CCWGG	3 cut(s)	219, 267, 495
BstNSI	RCATGY	2 cut(s)	9, 157
BstSCI	CCNGG	4 cut(s)	157, 217, 265, 493
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	495
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	449
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	3 cut(s)	38, 242, 303
Cac8I	GCNNGC	3 cut(s)	117, 332, 603
Cfr13I	GGNCC	2 cut(s)	385, 527
CviAII	CATG	2 cut(s)	6, 154
DdeI	CTNAG	4 cut(s)	73, 306, 479, 517
DpnI	GATC	1 cut(s)	451
DpnII	GATC	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	232, 561
Eco47I	GGWCC	2 cut(s)	385, 527
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	3 cut(s)	217, 265, 493
EcoT14I	CCWWGG	2 cut(s)	232, 561
ErhI	CCWWGG	2 cut(s)	232, 561
FaeI	CATG	2 cut(s)	9, 157
FaiI	YATR	4 cut(s)	7, 155, 261, 339
FatI	CATG	2 cut(s)	5, 153
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	484
FspBI	CTAG	3 cut(s)	69, 116, 425
GluI	GCNGC	1 cut(s)	484
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	9, 157
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	4 cut(s)	107, 222, 310, 498
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	430, 577
Hpy188I	TCNGA	4 cut(s)	143, 315, 480, 547
Hpy188III	TCNNGA	2 cut(s)	391, 453
Hpy8I	GTNNAC	2 cut(s)	430, 577
HpyAV	CCTTC	2 cut(s)	148, 388
HpyCH4III	ACNGT	2 cut(s)	319, 471
HpyCH4V	TGCA	5 cut(s)	23, 43, 54, 263, 601
HpyF3I	CTNAG	4 cut(s)	73, 306, 479, 517
Hsp92II	CATG	2 cut(s)	9, 157
Kzo9I	GATC	1 cut(s)	449
Lsp1109I	GCAGC	1 cut(s)	495
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	3 cut(s)	69, 116, 425
MaeIII	GTNAC	2 cut(s)	274, 349
MalI	GATC	1 cut(s)	451
MboI	GATC	1 cut(s)	449
MboII	GAAGA	1 cut(s)	465
MflI	RGATCY	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	5 cut(s)	189, 213, 252, 540, 608
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	3 cut(s)	101, 216, 507
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	7 cut(s)	137, 186, 291, 306, 364, 398, 547
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	4 cut(s)	159, 219, 267, 495
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	3 cut(s)	219, 267, 495
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	449
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	9, 157
NlaIV	GGNNCC	2 cut(s)	95, 529
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	2 cut(s)	9, 157
PciI	ACATGT	1 cut(s)	5
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	485
PleI	GAGTC	3 cut(s)	101, 216, 506
PpsI	GAGTC	3 cut(s)	101, 216, 506
PpuMI	RGGWCCY	1 cut(s)	385
PscI	ACATGT	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	217, 265, 493
PspGI	CCWGG	3 cut(s)	217, 265, 493
PspN4I	GGNNCC	2 cut(s)	95, 529
PspPI	GGNCC	2 cut(s)	385, 527
PspPPI	RGGWCCY	1 cut(s)	385
PstI	CTGCAG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	484
Sau3AI	GATC	1 cut(s)	449
Sau96I	GGNCC	2 cut(s)	385, 527
SchI	GAGTC	3 cut(s)	101, 216, 507
ScrFI	CCNGG	4 cut(s)	159, 219, 267, 495
SetI	ASST	7 cut(s)	74, 117, 127, 336, 356, 375, 387
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	2 cut(s)	385, 527
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	5 cut(s)	189, 213, 252, 540, 608
SspMI	CTAG	3 cut(s)	69, 116, 425
StyD4I	CCNGG	4 cut(s)	157, 217, 265, 493
StyI	CCWWGG	2 cut(s)	232, 561
TaaI	ACNGT	2 cut(s)	319, 471
TaqI	TCGA	2 cut(s)	27, 250
TasI	AATT	5 cut(s)	189, 213, 252, 540, 608
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	3 cut(s)	45, 249, 310
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	483
Tsp45I	GTSAC	1 cut(s)	349
TspRI	CASTG	3 cut(s)	45, 249, 310
VpaK11BI	GGWCC	2 cut(s)	385, 527
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	213, 608
XceI	RCATGY	2 cut(s)	9, 157
XspI	CTAG	3 cut(s)	69, 116, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.