Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Reverse (-)

4807183 .. 4807970

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G095600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAAACCAAATGTTGCTATTGACTACTTTGCTAGCCATGACGTGTGCTCTGGTCATTGCTTTTGAGCCTAGTCCTTTGCAAGATTTCTGCGTTGCTGACACTACTAGCTCAGCAACAAGAGTGAATGGGCTACCTTGCTTGGACTCCAAGCTAGTACAGGCTGAGCATTTCTTCTTCAGTGGACTTCACATCCCAGGCAACACCTCAAACCCTGTTGGAGGAAAAGTCACCCCAGTCAATGTGGTTCAAATTCCAGGACTCAACACACTCGGCATCTCTCTGGCTCGCATCGACTATGCACCCTGGGGCGTTATCCCTCCCCACACTCATCCCCGTGCCACCGAGATTTTGACCGTCCTAGAAGGCAGCCTCTATGTTGGCTTTGTGACCTCAAACCCTGACAACAAGCTCATCTCAAAGGTCCTTTACAAGGGTGATGTGTTTGTGTTCCCAGTTGGGCTAGTTCACTTCCAGCAGAATGTTGGCAATGGAAATGCCATATCCCTCTCTTCATTGAGCAGCCAAAACCCTGGAGTCAACACCATTGCTAATGCTGTTTTTGGAGCCAATCCTTCCATTCCAGGTGATGTTTTGGCCAAGTCTTTCCAGGTGGACAAGTCCGTAATTAGCAGTCTTCAGGCAAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.92

Weight (kDa)

6.49

Isoelectric Point (pI)

22.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	163, 623
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	221, 433
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	251
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	6 cut(s)	196, 256, 305, 532, 583, 609
AluBI	AGCT	3 cut(s)	111, 154, 412
AluI	AGCT	3 cut(s)	111, 154, 412
Alw21I	GWGCWC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	369, 522
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	223, 449, 599
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	381, 534
BciT130I	CCWGG	6 cut(s)	198, 258, 307, 534, 585, 611
BfaI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
BisI	GCNGC	2 cut(s)	370, 523
BlpI	GCTNAGC	2 cut(s)	112, 165
BlsI	GCNGC	2 cut(s)	371, 524
Bme1390I	CCNGG	6 cut(s)	198, 258, 307, 534, 585, 611
Bme18I	GGWCC	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	6 cut(s)	198, 258, 307, 534, 585, 611
BmrI	ACTGGG	2 cut(s)	230, 449
BmsI	GCATC	2 cut(s)	285, 300
BmtI	GCTAGC	1 cut(s)	38
BmuI	ACTGGG	2 cut(s)	230, 449
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	555
Bpu1102I	GCTNAGC	2 cut(s)	112, 165
BsaJI	CCNNGG	4 cut(s)	196, 305, 306, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 433
Bse1I	ACTGG	2 cut(s)	236, 455
Bse3DI	GCAATG	3 cut(s)	57, 496, 546
BseBI	CCWGG	6 cut(s)	198, 258, 307, 534, 585, 611
BseDI	CCNNGG	4 cut(s)	196, 305, 306, 532
BseGI	GGATG	2 cut(s)	192, 331
BseLI	CCNNNNNNNGG	2 cut(s)	221, 433
BseMI	GCAATG	3 cut(s)	57, 496, 546
BseMII	CTCAG	2 cut(s)	126, 156
BseNI	ACTGG	2 cut(s)	236, 455
BseXI	GCAGC	2 cut(s)	381, 534
BshFI	GGCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	221, 433
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp1720I	GCTNAGC	2 cut(s)	112, 165
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	2 cut(s)	125, 157
BspLI	GGNNCC	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	38
BsrDI	GCAATG	3 cut(s)	57, 496, 546
BsrI	ACTGG	2 cut(s)	236, 455
BssECI	CCNNGG	4 cut(s)	196, 305, 306, 532
Bst2UI	CCWGG	6 cut(s)	198, 258, 307, 534, 585, 611
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	36, 289
BstDEI	CTNAG	2 cut(s)	112, 165
BstENI	CCTNNNNNAGG	2 cut(s)	219, 431
BstF5I	GGATG	2 cut(s)	192, 331
BstNI	CCWGG	6 cut(s)	198, 258, 307, 534, 585, 611
BstSCI	CCNGG	6 cut(s)	196, 256, 305, 532, 583, 609
BstV1I	GCAGC	2 cut(s)	381, 534
BstV2I	GAAGAC	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	599
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	192, 331
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	36, 289
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	112, 165
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	163, 623
EcoNI	CCTNNNNNAGG	2 cut(s)	219, 431
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	6 cut(s)	196, 256, 305, 532, 583, 609
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 300, 378, 503
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	370, 523
FokI	GGATG	2 cut(s)	179, 318
Fsp4HI	GCNGC	2 cut(s)	370, 523
FspBI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
GluI	GCNGC	2 cut(s)	370, 523
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	599
Hin1II	CATG	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	3 cut(s)	146, 261, 537
HphI	GGTGA	3 cut(s)	223, 449, 599
Hpy166II	GTNNAC	4 cut(s)	185, 469, 541, 616
Hpy8I	GTNNAC	4 cut(s)	185, 469, 541, 616
HpyAV	CCTTC	2 cut(s)	359, 585
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	82, 302
HpyF3I	CTNAG	2 cut(s)	112, 165
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	566
Lsp1109I	GCAGC	2 cut(s)	381, 534
LweI	GCATC	2 cut(s)	285, 300
MaeI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	229, 388
MboII	GAAGA	4 cut(s)	166, 169, 504, 629
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	2 cut(s)	252, 627
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	3 cut(s)	140, 255, 546
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	215, 217, 330, 383, 403, 518
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	599
MspR9I	CCNGG	6 cut(s)	198, 258, 307, 534, 585, 611
MvaI	CCWGG	6 cut(s)	198, 258, 307, 534, 585, 611
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	2 cut(s)	229, 388
PasI	CCCWGGG	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	371, 524
PleI	GAGTC	3 cut(s)	140, 255, 545
PpsI	GAGTC	3 cut(s)	140, 255, 545
PpuMI	RGGWCCY	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	6 cut(s)	196, 256, 305, 532, 583, 609
PspGI	CCWGG	6 cut(s)	196, 256, 305, 532, 583, 609
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	336
SatI	GCNGC	2 cut(s)	370, 523
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	3 cut(s)	140, 255, 546
ScrFI	CCNGG	6 cut(s)	198, 258, 307, 534, 585, 611
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	2 cut(s)	285, 300
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	252, 627
SspMI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464
StyD4I	CCNGG	6 cut(s)	196, 256, 305, 532, 583, 609
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	252, 627
TatI	WGTACW	1 cut(s)	157
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	229, 388
TseI	GCWGC	2 cut(s)	369, 522
Tsp45I	GTSAC	2 cut(s)	229, 388
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	424
XagI	CCTNNNNNAGG	2 cut(s)	219, 431
XapI	RAATTY	1 cut(s)	252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XspI	CTAG	6 cut(s)	35, 72, 108, 155, 362, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.