Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Forward (+)

82081575 .. 82082325

Gene Structure 751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCAAACCAAATTGTGCTTTTGGCTTTTGTAGCAATGACATGTTCTCTGGTCATTGCTTTCGAGCCTAAACCACTGCAAGATTTCTGCATTGCTGACACTACTAGCTCAGTCAATTTGTGTACAGTAATAAGAGTAAATGGGTTCCCTTGCTTGGACTCCAAGCTAGCACAAGCTGACCATTTCTCCTTCGGAGGACTCCACATGCCCGGAAACACCACAAACCCTCTTGGCGTTAAAATTACCCCAGTCAATGTGGCTCAAATTCCAGGACTCAATACCCTTGGCATCTCGCTGGCTCGAATTGACTATGCACCAGGGGGTGTTACCCCTCCCCACACTCATCCTCGTGCCACTGAGATTCTGACAGTTGTGAAAGGCAAGCTCTATGTTGGCTTTGTGACCTCCAACCCAGAGAATAAGCTCATCTCAAAGGTCCTCAAGAAGGGTGATGTGTTTGTGTTCCCTATTGGACTAGTTCACTTCCAGCAAAATCTGGGATCTGGAACAGCCATTTCACAGTCTTCTCTGAGCAGCCAAAACCCTGGAGTCGTCACTATTGCTAACTCAGTTTTTGGACCCAATCCCTCAATTTCAGATGATGTTCTGGCCAAGGCTTTCCAAGTTGACAAATCCATTATTAGCAGTCTGCAGGCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0044464 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

221

Amino Acids

23.33

Weight (kDa)

8.71

Isoelectric Point (pI)

24.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	67 - 212	5.4e-50	Cupin
Cupin_2	PF07883	102 - 170	1.2e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	2 cut(s)	264, 659
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	154, 445
AflIII	ACRYGT	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	475
AjnI	CCWGG	3 cut(s)	268, 316, 544
AluBI	AGCT	5 cut(s)	108, 166, 176, 385, 424
AluI	AGCT	5 cut(s)	108, 166, 176, 385, 424
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	2 cut(s)	264, 659
AspS9I	GGNCC	2 cut(s)	436, 578
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	461
AsuNHI	GCTAGC	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	436, 578
BalI	TGGCCA	1 cut(s)	611
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	546
BciT130I	CCWGG	3 cut(s)	270, 318, 546
BcnI	CCSGG	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	3 cut(s)	105, 167, 476
BfmI	CTRYAG	1 cut(s)	650
BisI	GCNGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	536
Bme1390I	CCNGG	4 cut(s)	210, 270, 318, 546
Bme18I	GGWCC	2 cut(s)	436, 578
BmgT120I	GGNCC	2 cut(s)	436, 578
BmiI	GGNNCC	2 cut(s)	146, 580
BmrFI	CCNGG	4 cut(s)	210, 270, 318, 546
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	297
BmtI	GCTAGC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	283, 317, 544, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 445
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	3 cut(s)	42, 54, 90
BseBI	CCWGG	3 cut(s)	270, 318, 546
BseDI	CCNNGG	4 cut(s)	283, 317, 544, 612
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	154, 445
BseMI	GCAATG	3 cut(s)	42, 54, 90
BseMII	CTCAG	4 cut(s)	123, 348, 521, 582
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	546
BshFI	GGCC	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	154, 445
BsnI	GGCC	1 cut(s)	611
Bsp1407I	TGTACA	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	500
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	4 cut(s)	122, 349, 522, 581
BspLI	GGNNCC	2 cut(s)	146, 580
BspMAI	CTGCAG	1 cut(s)	654
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	508
BsrDI	GCAATG	3 cut(s)	42, 54, 90
BsrGI	TGTACA	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	4 cut(s)	283, 317, 544, 612
BssMI	GATC	1 cut(s)	500
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	283, 612
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	3 cut(s)	270, 318, 546
Bst4CI	ACNGT	3 cut(s)	127, 370, 522
BstAUI	TGTACA	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	168, 297, 383, 654
BstDEI	CTNAG	4 cut(s)	109, 357, 530, 568
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	500
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	3 cut(s)	270, 318, 546
BstNSI	RCATGY	2 cut(s)	45, 208
BstSCI	CCNGG	4 cut(s)	208, 268, 316, 544
BstSFI	CTRYAG	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	546
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	74, 354
Cac8I	GCNNGC	4 cut(s)	168, 297, 383, 654
Cfr13I	GGNCC	2 cut(s)	436, 578
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	2 cut(s)	42, 205
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	4 cut(s)	109, 357, 530, 568
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	609
Eco130I	CCWWGG	2 cut(s)	283, 612
Eco47I	GGWCC	2 cut(s)	436, 578
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	3 cut(s)	268, 316, 544
EcoT14I	CCWWGG	2 cut(s)	283, 612
ErhI	CCWWGG	2 cut(s)	283, 612
FaeI	CATG	2 cut(s)	45, 208
FaiI	YATR	4 cut(s)	43, 206, 312, 390
FatI	CATG	2 cut(s)	41, 204
Fnu4HI	GCNGC	1 cut(s)	535
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	535
FspBI	CTAG	3 cut(s)	105, 167, 476
GluI	GCNGC	1 cut(s)	535
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	2 cut(s)	45, 208
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	5 cut(s)	158, 198, 273, 361, 549
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	3 cut(s)	123, 481, 628
Hpy188I	TCNGA	4 cut(s)	194, 366, 531, 598
Hpy188III	TCNNGA	2 cut(s)	442, 504
Hpy8I	GTNNAC	3 cut(s)	123, 481, 628
HpyAV	CCTTC	2 cut(s)	199, 439
HpyCH4III	ACNGT	3 cut(s)	127, 370, 522
HpyCH4V	TGCA	4 cut(s)	79, 90, 314, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	4 cut(s)	109, 357, 530, 568
Hsp92II	CATG	2 cut(s)	45, 208
Kzo9I	GATC	1 cut(s)	500
Lsp1109I	GCAGC	1 cut(s)	546
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	3 cut(s)	105, 167, 476
MaeIII	GTNAC	3 cut(s)	325, 400, 553
MalI	GATC	1 cut(s)	502
MboI	GATC	1 cut(s)	500
MboII	GAAGA	1 cut(s)	516
MflI	RGATCY	1 cut(s)	500
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	7 cut(s)	12, 115, 240, 264, 303, 591, 659
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	4 cut(s)	152, 192, 267, 558
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	7 cut(s)	188, 237, 342, 357, 415, 449, 598
Mox20I	TGGCCA	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	611
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	4 cut(s)	210, 270, 318, 546
MvaI	CCWGG	3 cut(s)	270, 318, 546
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	500
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	45, 208
NlaIV	GGNNCC	2 cut(s)	146, 580
NmuCI	GTSAC	2 cut(s)	400, 553
NspI	RCATGY	2 cut(s)	45, 208
PciI	ACATGT	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	536
PleI	GAGTC	4 cut(s)	152, 192, 267, 557
PpsI	GAGTC	4 cut(s)	152, 192, 267, 557
PpuMI	RGGWCCY	1 cut(s)	436
PscI	ACATGT	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	268, 316, 544
PspGI	CCWGG	3 cut(s)	268, 316, 544
PspN4I	GGNNCC	2 cut(s)	146, 580
PspPI	GGNCC	2 cut(s)	436, 578
PspPPI	RGGWCCY	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	535
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	2 cut(s)	436, 578
SchI	GAGTC	4 cut(s)	152, 192, 267, 558
ScrFI	CCNGG	4 cut(s)	210, 270, 318, 546
SetI	ASST	7 cut(s)	110, 168, 178, 387, 407, 426, 438
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	1 cut(s)	650
SinI	GGWCC	2 cut(s)	436, 578
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	7 cut(s)	12, 115, 240, 264, 303, 591, 659
SspMI	CTAG	3 cut(s)	105, 167, 476
StyD4I	CCNGG	4 cut(s)	208, 268, 316, 544
StyI	CCWWGG	2 cut(s)	283, 612
TaaI	ACNGT	3 cut(s)	127, 370, 522
TaqI	TCGA	2 cut(s)	63, 301
TasI	AATT	7 cut(s)	12, 115, 240, 264, 303, 591, 659
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	81, 361
TseFI	GTSAC	2 cut(s)	400, 553
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	2 cut(s)	400, 553
TspRI	CASTG	2 cut(s)	81, 361
VpaK11BI	GGWCC	2 cut(s)	436, 578
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	2 cut(s)	264, 659
XceI	RCATGY	2 cut(s)	45, 208
XspI	CTAG	3 cut(s)	105, 167, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.