Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Reverse (-)

40693823 .. 40694583

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1271500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAACCCAACTTTTGGTATTAACTACTTTCCTAGCCGTCACATGTTCTCTAGTCGTTGCTTTTGAGCCTAGTCCATTGCAAGATTTTTGTGTTGCTGACGCTACTAGCACAGTTGCAAGAGTAAATGGTCTGCCTTGCTTGGACTCGAAGCTTGCAACAGCTGACCATTTCTTCTTCAGTGGACTTCACATCCCAGGCAACACCTCAAACCCTGTTGGTGGAAAAGTCACCCCTGTCAGTGTGGCTCAACTTCCGGGACTCAACACCCTCGGCATCTCGCTAGCTCGCATCGACTACGCGCCAATGGGTGTTATCCCTCCCCACACCCATCCCCGCGCCACCGAGATTCTGACGGTCTTGAAAGGCAAGCTCAATGTTGGGTTTGTGACCTCAAACCCCGAGAACAAGCTCTTCTCGAAGGTCCTTAAGAAGGGTGATGTGTTTGTGTTCCCTGTTGGACTAGTTCACTATCAGCAAAACCTGGGTTCTGGAACTGCCATCTCTCTATCTTCTTTGAGCAGCCAAAACCCTGGAGTCAACACCATTGCTAACGTTGTGTTTGGATCCAATCCTGCTATTTCTGAGGATGTTCTAGCCAAGTCTTTTCAGGTGGACAAATCCGTAATTAGCGATCTTCAAGCCAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0044464 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

218

Amino Acids

22.79

Weight (kDa)

7.76

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	62 - 209	3.8e-51	Cupin
Cupin_2	PF07883	98 - 167	3e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccII	CGCG	2 cut(s)	302, 339
AciI	CCGC	1 cut(s)	337
AclI	AACGTT	1 cut(s)	555
AclWI	GGATC	2 cut(s)	561, 574
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	163
AfiI	CCNNNNNNNGG	3 cut(s)	16, 221, 433
AflII	CTTAAG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	364, 641
AhlI	ACTAGT	1 cut(s)	463
AjnI	CCWGG	3 cut(s)	196, 483, 532
AluBI	AGCT	5 cut(s)	154, 164, 287, 373, 412
AluI	AGCT	5 cut(s)	154, 164, 287, 373, 412
AlwI	GGATC	2 cut(s)	561, 574
Ama87I	CYCGRG	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	1 cut(s)	647
AspLEI	GCGC	2 cut(s)	304, 341
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	223, 449
AsuNHI	GCTAGC	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	424
BamHI	GGATCC	1 cut(s)	566
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	2 cut(s)	339, 509
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	3 cut(s)	198, 485, 534
BcnI	CCSGG	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	463
BfaI	CTAG	7 cut(s)	35, 53, 72, 108, 284, 464, 596
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	4 cut(s)	198, 258, 485, 534
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	4 cut(s)	198, 258, 485, 534
BmsI	GCATC	2 cut(s)	285, 300
BmtI	GCTAGC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	196, 271, 484, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 221, 433
Bse3DI	GCAATG	2 cut(s)	77, 546
BseBI	CCWGG	3 cut(s)	198, 485, 534
BseDI	CCNNGG	4 cut(s)	196, 271, 484, 532
BseGI	GGATG	3 cut(s)	192, 331, 595
BseLI	CCNNNNNNNGG	3 cut(s)	16, 221, 433
BseMI	GCAATG	2 cut(s)	77, 546
BseMII	CTCAG	1 cut(s)	576
BseXI	GCAGC	1 cut(s)	534
Bsh1236I	CGCG	2 cut(s)	302, 339
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	16, 221, 433
BsmFI	GGGAC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	566, 634
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	2 cut(s)	302, 339
BspLI	GGNNCC	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	561, 574
BspQI	GCTCTTC	1 cut(s)	419
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	77, 546
BssECI	CCNNGG	4 cut(s)	196, 271, 484, 532
BssMI	GATC	2 cut(s)	566, 634
Bst2UI	CCWGG	3 cut(s)	198, 485, 534
Bst4CI	ACNGT	2 cut(s)	115, 358
Bst6I	CTCTTC	1 cut(s)	419
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	4 cut(s)	156, 285, 289, 371
BstDEI	CTNAG	1 cut(s)	585
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	192, 331, 595
BstFNI	CGCG	2 cut(s)	302, 339
BstHHI	GCGC	2 cut(s)	304, 341
BstKTI	GATC	2 cut(s)	569, 637
BstMBI	GATC	2 cut(s)	566, 634
BstNI	CCWGG	3 cut(s)	198, 485, 534
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	4 cut(s)	196, 256, 483, 532
BstUI	CGCG	2 cut(s)	302, 339
BstV1I	GCAGC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	566
BtsCI	GGATG	3 cut(s)	192, 331, 595
BtsIMutI	CAGTG	2 cut(s)	187, 247
Cac8I	GCNNGC	4 cut(s)	156, 285, 289, 371
CfoI	GCGC	2 cut(s)	304, 341
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	2 cut(s)	568, 636
DpnII	GATC	2 cut(s)	566, 634
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	3 cut(s)	196, 483, 532
FaeI	CATG	1 cut(s)	48
FaiI	YATR	1 cut(s)	46
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	1 cut(s)	44
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	3 cut(s)	179, 318, 602
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	7 cut(s)	35, 53, 72, 108, 284, 464, 596
GlaI	GCGC	2 cut(s)	303, 340
GluI	GCNGC	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	555
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	2 cut(s)	304, 341
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	2 cut(s)	302, 339
HinP1I	GCGC	2 cut(s)	302, 339
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	4 cut(s)	146, 261, 349, 537
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	223, 449
Hpy166II	GTNNAC	4 cut(s)	185, 469, 541, 616
Hpy188I	TCNGA	2 cut(s)	354, 586
Hpy188III	TCNNGA	3 cut(s)	361, 418, 492
Hpy8I	GTNNAC	4 cut(s)	185, 469, 541, 616
HpyAV	CCTTC	2 cut(s)	415, 427
HpyCH4III	ACNGT	2 cut(s)	115, 358
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	3 cut(s)	82, 119, 158
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	2 cut(s)	302, 339
Kzo9I	GATC	2 cut(s)	566, 634
LguI	GCTCTTC	1 cut(s)	419
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	2 cut(s)	285, 300
MaeI	CTAG	7 cut(s)	35, 53, 72, 108, 284, 464, 596
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	3 cut(s)	40, 229, 388
MalI	GATC	2 cut(s)	568, 636
MboI	GATC	2 cut(s)	566, 634
MboII	GAAGA	5 cut(s)	166, 169, 406, 504, 629
MflI	RGATCY	1 cut(s)	566
MluCI	AATT	2 cut(s)	627, 647
MlyI	GAGTC	3 cut(s)	140, 255, 546
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	5 cut(s)	217, 281, 330, 403, 580
MseI	TTAA	2 cut(s)	23, 429
MspA1I	CMGCKG	1 cut(s)	164
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	4 cut(s)	198, 258, 485, 534
MvaI	CCWGG	3 cut(s)	198, 485, 534
MvnI	CGCG	2 cut(s)	302, 339
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	566, 634
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	3 cut(s)	40, 229, 388
NspI	RCATGY	1 cut(s)	48
PciI	ACATGT	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	3 cut(s)	140, 255, 545
PpsI	GAGTC	3 cut(s)	140, 255, 545
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	3 cut(s)	196, 483, 532
PspGI	CCWGG	3 cut(s)	196, 483, 532
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	566
PvuII	CAGCTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	23, 429
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	566, 634
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	3 cut(s)	140, 255, 546
ScrFI	CCNGG	4 cut(s)	198, 258, 485, 534
SfaNI	GCATC	2 cut(s)	285, 300
SinI	GGWCC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	463
Sse9I	AATT	2 cut(s)	627, 647
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	7 cut(s)	35, 53, 72, 108, 284, 464, 596
StyD4I	CCNGG	4 cut(s)	196, 256, 483, 532
TaaI	ACNGT	2 cut(s)	115, 358
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	3 cut(s)	149, 294, 419
TasI	AATT	2 cut(s)	627, 647
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	23, 429
Tru9I	TTAA	2 cut(s)	23, 429
TscAI	CASTG	2 cut(s)	187, 247
TseFI	GTSAC	3 cut(s)	40, 229, 388
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	3 cut(s)	40, 229, 388
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	187, 247
Van91I	CCANNNNNTGG	1 cut(s)	16
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	424
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	7 cut(s)	35, 53, 72, 108, 284, 464, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.