Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8334417.1

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Forward (+)

51 .. 831

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8334417.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgacatgtactttggtcattgcctttgagcctagtccactgcaagatttctgcgtagctgacactactagctcagtaccaagagtaaatggcctaccttgcttagactccaagttagcacaagctgaccatttcttcttcggagggcttcaccttgccggaaacacctcaaaccctcttggagttaaaatcacttcagtcaatgtggctcaaattccaggactcaacaccctcggcatctcacttgctcgtattgactatgcaccgtggggcgttacccctcctcacactcatccccgtgccactgaaattctaacagtcttggaaggccgtgttgctgttggttttgtgacctctaaccccgacaacaagctcatctctaaggtgctcaacaagggtgatgtgtttgttttccctgttgggctagttcactaccagcaaaatgtgggtaatggaactgccgtttcactctcttctctaagcagccaaaaccctggagtcatcactattgctaattcagtttttggagcgaatccctcaatttcggatgatgttctagccaaggcttttcaggtggacaaatccataattagtaatcttcaagcaaaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

204

Amino Acids

21.47

Weight (kDa)

6.49

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	213, 309, 608
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	10, 78
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	602
AjnI	CCWGG	2 cut(s)	217, 493
AluBI	AGCT	4 cut(s)	59, 72, 125, 373
AluI	AGCT	4 cut(s)	59, 72, 125, 373
Alw21I	GWGCWC	1 cut(s)	390
AoxI	GGCC	2 cut(s)	91, 328
ApeKI	GCWGC	1 cut(s)	483
ApoI	RAATTY	3 cut(s)	213, 309, 608
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	143, 410
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	495
BceAI	ACGGC	2 cut(s)	315, 446
BciT130I	CCWGG	2 cut(s)	219, 495
BfaI	CTAG	4 cut(s)	33, 69, 425, 557
BisI	GCNGC	1 cut(s)	484
BlsI	GCNGC	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	219, 495
BmrFI	CCNGG	2 cut(s)	219, 495
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	516
BsaJI	CCNNGG	4 cut(s)	232, 266, 493, 561
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	219, 495
BseDI	CCNNGG	4 cut(s)	232, 266, 493, 561
BseGI	GGATG	2 cut(s)	292, 553
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	495
BshFI	GGCC	2 cut(s)	93, 330
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	159
BsnI	GGCC	2 cut(s)	93, 330
Bsp1286I	GDGCHC	1 cut(s)	390
BspANI	GGCC	2 cut(s)	93, 330
BspCNI	CTCAG	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	4 cut(s)	232, 266, 493, 561
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	219, 495
Bst4CI	ACNGT	2 cut(s)	267, 319
Bst6I	CTCTTC	1 cut(s)	478
BstDEI	CTNAG	4 cut(s)	73, 103, 381, 479
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	292, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	2 cut(s)	219, 495
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	217, 493
BstV1I	GCAGC	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	93, 330
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	292, 553
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 303
Csp6I	GTAC	2 cut(s)	9, 77
CviAII	CATG	1 cut(s)	6
CviQI	GTAC	2 cut(s)	9, 77
DdeI	CTNAG	4 cut(s)	73, 103, 381, 479
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	217, 493
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	1 cut(s)	9
FaiI	YATR	3 cut(s)	7, 261, 587
FatI	CATG	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	2 cut(s)	279, 560
Fsp4HI	GCNGC	1 cut(s)	484
FspBI	CTAG	4 cut(s)	33, 69, 425, 557
GluI	GCNGC	1 cut(s)	484
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	93, 330
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	1 cut(s)	9
HinfI	GANTC	4 cut(s)	107, 222, 498, 532
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	143, 410
Hpy166II	GTNNAC	3 cut(s)	38, 430, 577
Hpy188I	TCNGA	2 cut(s)	143, 547
Hpy8I	GTNNAC	3 cut(s)	38, 430, 577
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	267, 319
HpyCH4V	TGCA	2 cut(s)	43, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	4 cut(s)	73, 103, 381, 479
Hsp92II	CATG	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	527
LpnPI	CCDG	8 cut(s)	172, 204, 231, 429, 449, 480, 507, 557
Lsp1109I	GCAGC	1 cut(s)	495
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	4 cut(s)	33, 69, 425, 557
MaeIII	GTNAC	2 cut(s)	274, 349
MboII	GAAGA	4 cut(s)	127, 130, 465, 590
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	6 cut(s)	213, 309, 514, 540, 588, 608
MlyI	GAGTC	3 cut(s)	101, 216, 507
MnlI	CCTC	8 cut(s)	137, 178, 186, 242, 291, 294, 364, 547
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	219, 495
MvaI	CCWGG	2 cut(s)	219, 495
MwoI	GCNNNNNNNGC	1 cut(s)	99
NlaIII	CATG	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	9
PciI	ACATGT	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	532
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	485
PleI	GAGTC	3 cut(s)	101, 216, 506
PpsI	GAGTC	3 cut(s)	101, 216, 506
PscI	ACATGT	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	217, 493
PspGI	CCWGG	2 cut(s)	217, 493
RsaI	GTAC	2 cut(s)	10, 78
RsaNI	GTAC	2 cut(s)	9, 77
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	484
SchI	GAGTC	3 cut(s)	101, 216, 507
ScrFI	CCNGG	2 cut(s)	219, 495
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	6 cut(s)	213, 309, 514, 540, 588, 608
SspMI	CTAG	4 cut(s)	33, 69, 425, 557
StyD4I	CCNGG	2 cut(s)	217, 493
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	267, 319
TasI	AATT	6 cut(s)	213, 309, 514, 540, 588, 608
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	45, 310
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	483
Tsp45I	GTSAC	1 cut(s)	349
TspRI	CASTG	2 cut(s)	45, 310
XapI	RAATTY	3 cut(s)	213, 309, 608
XceI	RCATGY	1 cut(s)	9
XspI	CTAG	4 cut(s)	33, 69, 425, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.