Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Forward (+)

11505066 .. 11507032

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG137900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCCTTCAATCGCACGAGACTCTGGTATAGTTTTCAAAGACACTGCTATGGAAAGCCTTTGGAGACGCTCTCTGTCCTAGCCATGACATGTACTTTGGTCATTGCCTTTGAGCCTAGTCCACTGCAAGATTTCTGCGTAGCTGACACTACTAGCTCAGTACCAAGAGTAAATGGCCTACCTTGCTTAGACTCCAAGTTAGCACAAGCTGACCATTTCTTCTTCGGAGGGCTTCACCTTGCCGGAAACACCTCAAACCCTCTTGGAGTTAAAATCACTTCAGTCAATGTGGCTCAAATTCCAGGACTCAACACCCTCGGCATCTCACTTGCTCGTATTGACTATGCACCGTGGGGCGTTACCCCTCCTCACACTCATCCTCGTGCCACTGAAATTCTAACAGTCTTGGAAGGCCGTGTTGCTGTTGGTTTTGTGACCTCTAACCCCGACAACAAGCTCATCTCTAAGGTGCTCAACAAGGGTGATGTGTTTGTTTTCCCTGTTGGGCTAGTTCACTACCAGCAAAATGTGGGTAATGGAACTGCCGTTTCACTCTCTTCTCTGAGCAGCCAAAACCCTGGAGTCATCACTATTGCTAATTCAGTTTTTGGAGCGAATCCCTCAATTTCGGATGATGTTCTATCCAAGGCTTTTCAGGTGGACAAATCCATAATTAGTAATCTTCAAGCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

232

Amino Acids

24.85

Weight (kDa)

8.37

Isoelectric Point (pI)

24.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	81 - 223	5.3e-49	Cupin
Cupin_2	PF07883	113 - 184	1.2e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	297, 393, 692
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	94, 162
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	10, 38, 686
AjnI	CCWGG	2 cut(s)	301, 577
AluBI	AGCT	4 cut(s)	143, 156, 209, 457
AluI	AGCT	4 cut(s)	143, 156, 209, 457
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	2 cut(s)	13, 59
AoxI	GGCC	3 cut(s)	3, 175, 412
ApeKI	GCWGC	1 cut(s)	567
ApoI	RAATTY	3 cut(s)	297, 393, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AsuHPI	GGTGA	2 cut(s)	227, 494
BauI	CACGAG	2 cut(s)	16, 381
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	579
BceAI	ACGGC	2 cut(s)	399, 530
BciT130I	CCWGG	2 cut(s)	303, 579
BcoDI	GTCTC	2 cut(s)	13, 59
BfaI	CTAG	4 cut(s)	80, 117, 153, 509
BisI	GCNGC	1 cut(s)	568
BlsI	GCNGC	1 cut(s)	569
Bme1390I	CCNGG	2 cut(s)	303, 579
BmrFI	CCNGG	2 cut(s)	303, 579
BmsI	GCATC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	600
BsaJI	CCNNGG	4 cut(s)	316, 350, 577, 645
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	303, 579
BseDI	CCNNGG	4 cut(s)	316, 350, 577, 645
BseGI	GGATG	2 cut(s)	376, 637
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	171, 554
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	579
BshFI	GGCC	3 cut(s)	5, 177, 414
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	13, 59
BsmBI	CGTCTC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	5, 177, 414
Bsp1286I	GDGCHC	1 cut(s)	474
BspANI	GGCC	3 cut(s)	5, 177, 414
BspCNI	CTCAG	2 cut(s)	170, 555
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	4 cut(s)	316, 350, 577, 645
BssSI	CACGAG	2 cut(s)	16, 381
BssT1I	CCWWGG	1 cut(s)	645
Bst2BI	CACGAG	2 cut(s)	16, 381
Bst2UI	CCWGG	2 cut(s)	303, 579
Bst4CI	ACNGT	2 cut(s)	351, 403
Bst6I	CTCTTC	1 cut(s)	562
BstDEI	CTNAG	4 cut(s)	157, 187, 465, 563
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	376, 637
BstMAI	GTCTC	2 cut(s)	13, 59
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	2 cut(s)	303, 579
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	301, 577
BstV1I	GCAGC	1 cut(s)	579
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	5, 177, 414
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	376, 637
BtsI	GCAGTG	2 cut(s)	43, 122
BtsIMutI	CAGTG	3 cut(s)	43, 122, 387
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	93, 161
CviAII	CATG	2 cut(s)	85, 90
CviQI	GTAC	2 cut(s)	93, 161
DdeI	CTNAG	4 cut(s)	157, 187, 465, 563
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	301, 577
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	2 cut(s)	88, 93
FaiI	YATR	6 cut(s)	30, 51, 86, 91, 345, 671
FatI	CATG	2 cut(s)	84, 89
Fnu4HI	GCNGC	1 cut(s)	568
FokI	GGATG	2 cut(s)	363, 644
Fsp4HI	GCNGC	1 cut(s)	568
FspBI	CTAG	4 cut(s)	80, 117, 153, 509
GluI	GCNGC	1 cut(s)	568
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	5, 177, 414
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	88, 93
HinfI	GANTC	5 cut(s)	21, 191, 306, 582, 616
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	227, 494
Hpy166II	GTNNAC	3 cut(s)	122, 514, 661
Hpy188I	TCNGA	3 cut(s)	227, 564, 631
Hpy8I	GTNNAC	3 cut(s)	122, 514, 661
HpyAV	CCTTC	2 cut(s)	16, 404
HpyCH4III	ACNGT	2 cut(s)	351, 403
HpyCH4V	TGCA	2 cut(s)	127, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	4 cut(s)	157, 187, 465, 563
Hsp92II	CATG	2 cut(s)	88, 93
LmnI	GCTCC	1 cut(s)	611
LpnPI	CCDG	9 cut(s)	10, 256, 288, 315, 513, 533, 564, 591, 641
Lsp1109I	GCAGC	1 cut(s)	579
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	4 cut(s)	80, 117, 153, 509
MaeIII	GTNAC	2 cut(s)	358, 433
MboII	GAAGA	4 cut(s)	211, 214, 549, 674
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	6 cut(s)	297, 393, 598, 624, 672, 692
MlyI	GAGTC	4 cut(s)	15, 185, 300, 591
MnlI	CCTC	9 cut(s)	221, 262, 270, 326, 375, 378, 390, 448, 631
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	48, 381
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	303, 579
MvaI	CCWGG	2 cut(s)	303, 579
MwoI	GCNNNNNNNGC	1 cut(s)	183
NlaIII	CATG	2 cut(s)	88, 93
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	93
PciI	ACATGT	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	616
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	569
PleI	GAGTC	4 cut(s)	15, 185, 300, 590
PpsI	GAGTC	4 cut(s)	15, 185, 300, 590
PscI	ACATGT	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	301, 577
PspGI	CCWGG	2 cut(s)	301, 577
RsaI	GTAC	2 cut(s)	94, 162
RsaNI	GTAC	2 cut(s)	93, 161
RseI	CAYNNNNRTG	2 cut(s)	48, 381
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	568
SchI	GAGTC	4 cut(s)	15, 185, 300, 591
ScrFI	CCNGG	2 cut(s)	303, 579
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	330
SmiMI	CAYNNNNRTG	2 cut(s)	48, 381
Sse9I	AATT	6 cut(s)	297, 393, 598, 624, 672, 692
SspMI	CTAG	4 cut(s)	80, 117, 153, 509
StyD4I	CCNGG	2 cut(s)	301, 577
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	351, 403
TasI	AATT	6 cut(s)	297, 393, 598, 624, 672, 692
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	3 cut(s)	50, 129, 394
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	567
Tsp45I	GTSAC	1 cut(s)	433
TspRI	CASTG	3 cut(s)	50, 129, 394
XapI	RAATTY	3 cut(s)	297, 393, 692
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	4 cut(s)	80, 117, 153, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.