Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Reverse (-)

7209066 .. 7215060

Gene Structure 5995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12170.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTGTTAATAAGCCTCGGAATGTTACCTATAAAGGACTTACTGACCTGGTTACTGAATAAAAAAAGTGAAGCAGCAATCTTGGAAGTTGTGAAAGAGAACTTTGGAGATCACCTTATTCTTGGAGAGGAAGGTGGAATTATTGGAGATACATCATCTGATTACCTGTGGTGCATTGATCCATTAGATGGAACGACAAATTTTGCACATGGTTACCCTAGCTTTGCAGTTTCTGTGGGAGTCCTATTTCGAGGAAAACCTGCTGCTGCTGCTGTTGTAGAGTTTGTTGGAGGCCCAATGTGTTGGAATACTCGCATCTTTTCTGCTAGTGCAGGTGGGGGAGCATTTTGTAACGGCCAAAAGATTCATGCGAGTCAAACGGATAAGGTGGAACGATCTCTTCTTGTTACTGGGTTTGGTTATGAACACGATGATCCATGGGCCACCAACATAGAACTATTCAAAGAGTTCACTGACGTCAGCAGGGGTGTCAGAAGGCTCGGTGCTGCTGCAGTAGACATGTGCCATGTAGCTCTTGGGATCGTAGAAGCATACTGGGAATATCGACTAAAGCCATGGGATATGGCTGCTGGTGTTTTGATAGTTGAGGAAGCTGGAGGAGTGGTTACCTGCATGGATGGTGGAAAATTTTGTATATTTGATAGATCTGTTCTGGTATCAAATGGAGTGCTGCATGACAAGCTTTTGGAGAGGATTGCACCAGCAACTGAGAATTTGAAGAGCAAAAAAATTGATTTCTCTTTGTGGTATAAGCCTGAAAATTACAGGACAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

267

Amino Acids

29.15

Weight (kDa)

5.19

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	87 - 351	3.3e-77	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
AatII	GACGTC	1 cut(s)	480
Acc36I	ACCTGC	3 cut(s)	268, 323, 638
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	516
AclWI	GGATC	3 cut(s)	173, 428, 548
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	199, 647, 733
AcyI	GRCGYC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	463, 739
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	222, 533, 614, 703
AluI	AGCT	4 cut(s)	222, 533, 614, 703
AlwI	GGATC	3 cut(s)	173, 428, 548
AlwNI	CAGNNNCTG	2 cut(s)	233, 728
AoxI	GGCC	3 cut(s)	292, 355, 441
ApeKI	GCWGC	8 cut(s)	74, 263, 266, 269, 506, 509, 587, 691
ApoI	RAATTY	3 cut(s)	199, 647, 733
AspS9I	GGNCC	2 cut(s)	293, 441
AsuHPI	GGTGA	1 cut(s)	104
BbvI	GCAGC	8 cut(s)	86, 250, 253, 256, 493, 496, 574, 678
BccI	CCATC	2 cut(s)	182, 632
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	49
BfaI	CTAG	2 cut(s)	219, 327
BfmI	CTRYAG	1 cut(s)	510
BfuAI	ACCTGC	3 cut(s)	268, 323, 638
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	8 cut(s)	75, 264, 267, 270, 507, 510, 588, 692
BlsI	GCNGC	8 cut(s)	76, 265, 268, 271, 508, 511, 589, 693
Bme1390I	CCNGG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	293, 441
BmrFI	CCNGG	1 cut(s)	49
BmrI	ACTGGG	2 cut(s)	420, 565
BmsI	GCATC	1 cut(s)	324
BmuI	ACTGGG	2 cut(s)	420, 565
BpmI	CTGGAG	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	3 cut(s)	16, 437, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	415, 560
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	3 cut(s)	16, 437, 575
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	415, 560
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	8 cut(s)	86, 250, 253, 256, 493, 496, 574, 678
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	294, 357, 443
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	3 cut(s)	294, 357, 443
Bsp143I	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
Bsp19I	CCATGG	2 cut(s)	437, 575
BspANI	GGCC	3 cut(s)	294, 357, 443
BspCNI	CTCAG	1 cut(s)	721
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	3 cut(s)	268, 323, 638
BspPI	GGATC	3 cut(s)	173, 428, 548
BspQI	GCTCTTC	1 cut(s)	734
BsrI	ACTGG	2 cut(s)	415, 560
BssECI	CCNNGG	3 cut(s)	16, 437, 575
BssMI	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	2 cut(s)	437, 575
Bst2UI	CCWGG	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	405, 734
BstACI	GRCGYC	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	729
BstDSI	CCRYGG	2 cut(s)	437, 575
BstEII	GGTNACC	2 cut(s)	212, 625
BstF5I	GGATG	1 cut(s)	643
BstKTI	GATC	6 cut(s)	112, 181, 398, 436, 543, 668
BstMBI	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 700
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	523
BstPI	GGTNACC	2 cut(s)	212, 625
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	8 cut(s)	86, 250, 253, 256, 493, 496, 574, 678
BstX2I	RGATCY	1 cut(s)	665
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	294, 357, 443
BtgI	CCRYGG	2 cut(s)	437, 575
BtsCI	GGATG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	3 cut(s)	268, 323, 638
CaiI	CAGNNNCTG	2 cut(s)	233, 728
Cfr13I	GGNCC	2 cut(s)	293, 441
CsiI	ACCWGGT	1 cut(s)	47
CviAII	CATG	8 cut(s)	209, 368, 438, 520, 527, 576, 634, 695
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	6 cut(s)	111, 180, 397, 435, 542, 667
DpnII	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	405, 734
EarI	CTCTTC	2 cut(s)	405, 734
Eco130I	CCWWGG	2 cut(s)	437, 575
Eco91I	GGTNACC	2 cut(s)	212, 625
EcoO65I	GGTNACC	2 cut(s)	212, 625
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	437, 575
ErhI	CCWWGG	2 cut(s)	437, 575
FaeI	CATG	8 cut(s)	212, 371, 441, 523, 530, 579, 637, 698
FatI	CATG	8 cut(s)	208, 367, 437, 519, 526, 575, 633, 694
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	8 cut(s)	75, 264, 267, 270, 507, 510, 588, 692
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	8 cut(s)	75, 264, 267, 270, 507, 510, 588, 692
FspBI	CTAG	2 cut(s)	219, 327
GluI	GCNGC	8 cut(s)	75, 264, 267, 270, 507, 510, 588, 692
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	294, 357, 443
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	8 cut(s)	212, 371, 441, 523, 530, 579, 637, 698
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	3 cut(s)	240, 364, 373
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	471, 517
Hpy188I	TCNGA	3 cut(s)	20, 160, 494
Hpy8I	GTNNAC	2 cut(s)	471, 517
HpyAV	CCTTC	2 cut(s)	125, 489
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	8 cut(s)	174, 206, 227, 332, 512, 633, 694, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 700
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	8 cut(s)	212, 371, 441, 523, 530, 579, 637, 698
Kzo9I	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
LguI	GCTCTTC	1 cut(s)	734
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	8 cut(s)	86, 250, 253, 256, 493, 496, 574, 678
LweI	GCATC	1 cut(s)	324
MabI	ACCWGGT	1 cut(s)	47
MaeI	CTAG	2 cut(s)	219, 327
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	6 cut(s)	24, 51, 212, 350, 406, 625
MalI	GATC	6 cut(s)	111, 180, 397, 435, 542, 667
MboI	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
MboII	GAAGA	2 cut(s)	392, 751
MflI	RGATCY	1 cut(s)	665
MluCI	AATT	6 cut(s)	138, 199, 647, 733, 750, 781
MlyI	GAGTC	2 cut(s)	249, 382
MmeI	TCCRAC	2 cut(s)	268, 284
MnlI	CCTC	7 cut(s)	26, 121, 245, 284, 601, 611, 705
MseI	TTAA	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	269, 700
NcoI	CCATGG	2 cut(s)	437, 575
NdeII	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
NlaIII	CATG	8 cut(s)	212, 371, 441, 523, 530, 579, 637, 698
NspI	RCATGY	1 cut(s)	523
PaqCI	CACCTGC	1 cut(s)	323
PciI	ACATGT	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	734
PfeI	GAWTC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	8 cut(s)	76, 265, 268, 271, 508, 511, 589, 693
PleI	GAGTC	2 cut(s)	248, 381
PpsI	GAGTC	2 cut(s)	248, 381
PscI	ACATGT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	47
PspEI	GGTNACC	2 cut(s)	212, 625
PspGI	CCWGG	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	293, 441
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	2 cut(s)	233, 728
PsuI	RGATCY	1 cut(s)	665
SapI	GCTCTTC	1 cut(s)	734
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	8 cut(s)	75, 264, 267, 270, 507, 510, 588, 692
Sau3AI	GATC	6 cut(s)	109, 178, 395, 433, 540, 665
Sau96I	GGNCC	2 cut(s)	293, 441
SchI	GAGTC	2 cut(s)	249, 382
ScrFI	CCNGG	1 cut(s)	49
SexAI	ACCWGGT	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	510
Sse9I	AATT	6 cut(s)	138, 199, 647, 733, 750, 781
SspMI	CTAG	2 cut(s)	219, 327
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	437, 575
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	250, 565
TasI	AATT	6 cut(s)	138, 199, 647, 733, 750, 781
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	8 cut(s)	74, 263, 266, 269, 506, 509, 587, 691
TspDTI	ATGAA	2 cut(s)	356, 438
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	188
XapI	RAATTY	3 cut(s)	199, 647, 733
XceI	RCATGY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	2 cut(s)	219, 327
ZraI	GACGTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.