Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

33046879 .. 33047346

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1234300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGATGGTGGAAAATTTCCTGTATTTGATAGATCTGTCTTGGTATCCAATGGTGTGCTGCATGGCAAGCTTTTGGAGAGGATTGCACCTGCAACTGAGAAATTGAAGAGCAAAGGTATCGATTTTTCATTGTGGTACAAGCCCGAAGATTACACAACAGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

56

Amino Acids

6.18

Weight (kDa)

6.54

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciVI	GTATCC	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	120
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	88
BspDI	ATCGAT	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	101
BssMI	GATC	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	55
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	2 cut(s)	70, 142
CviKI_1	RGCY	2 cut(s)	70, 142
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	65
FaiI	YATR	1 cut(s)	63
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	61, 86, 92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	32
LguI	GCTCTTC	1 cut(s)	101
LpnPI	CCDG	2 cut(s)	33, 102
Lsp1109I	GCAGC	1 cut(s)	45
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	118, 158
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	2 cut(s)	14, 101
MnlI	CCTC	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	65
PaqCI	CACCTGC	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	32
SetI	ASST	3 cut(s)	72, 91, 118
SgeI	CNNG	7 cut(s)	32, 52, 74, 79, 101, 151, 155
Sse9I	AATT	2 cut(s)	14, 101
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	14, 101
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.