Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Reverse (-)

14837887 .. 14839236

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCGATATTTCCTTGTTCCCTTCTATTTGAAAAGCAATTATGTTCAGGTAGAGTTTGTCGGAGGCCCAGTGTGTTGGAATACTCGCATCTTTTCTGCGAGTGCTGGTGGGGAGCATTTTGTAATGGCCAAAAGATTCACGTGGACCTTTCTGGTTTCAGGCTCACCCTCTTCCATATTTCAGGTGGAACGATCTCTTCTTGATTCTGGGTTTGATTATGAGCATGATGATCCAGGGGCCACGAACATAGAACTATTCAAAGAGTTCACTGACGTCAGCAGGGGTGTCAGAAGGCTCGGTGCTGCTGCAGTAGACATGTGCCATGTAGCTTTTGGGATCGTGGAAGCATACTGGGAATATCCACTCAAGCTATGGGATATGGCTTCTGGTGTTTTGATAGTTGAGGAAGCGGAGGAGTGTTATATCCATAATCCAAAAGAAAAGGATTCTGTTGTGTGGCTTGTGGAAATGCAAGTCTGTCATAGAGTTCTCAAGCTTGTGCTTTTGGAGAGGATTGCTCCAGCAACTGAGAATTTGAAGAGCAAACAAATCAATTTCTCATTGTGGTATAAGCCTGAAAACTGCAGGACAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

199

Amino Acids

22.89

Weight (kDa)

5.42

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	27 - 141	7.3e-16	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	2 cut(s)	224, 344
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	532
AcvI	CACGTG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	31, 259, 538
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	3 cut(s)	329, 370, 496
AluI	AGCT	3 cut(s)	329, 370, 496
AlwI	GGATC	2 cut(s)	224, 344
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	64, 126, 237
ApeKI	GCWGC	2 cut(s)	302, 305
ApoI	RAATTY	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	65, 144, 237
AsuHPI	GGTGA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	289, 292
BciT130I	CCWGG	1 cut(s)	234
BfmI	CTRYAG	2 cut(s)	306, 583
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	3 cut(s)	65, 144, 237
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	2 cut(s)	62, 361
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	2 cut(s)	62, 361
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	350, 476
BsaAI	YACGTR	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse1I	ACTGG	2 cut(s)	68, 356
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	68, 356
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	289, 292
BshFI	GGCC	3 cut(s)	66, 128, 239
BsnI	GGCC	3 cut(s)	66, 128, 239
Bsp143I	GATC	3 cut(s)	191, 229, 336
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	3 cut(s)	66, 128, 239
BspCNI	CTCAG	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	2 cut(s)	310, 587
BspPI	GGATC	2 cut(s)	224, 344
BspQI	GCTCTTC	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	68, 356
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	3 cut(s)	191, 229, 336
BssNI	GRCGYC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	234
Bst6I	CTCTTC	3 cut(s)	175, 201, 533
BstACI	GRCGYC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	528
BstKTI	GATC	3 cut(s)	194, 232, 339
BstMBI	GATC	3 cut(s)	191, 229, 336
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	2 cut(s)	306, 583
BstV1I	GCAGC	2 cut(s)	289, 292
BstXI	CCANNNNNNTGG	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	66, 128, 239
BtsIMutI	CAGTG	2 cut(s)	75, 267
CaiI	CAGNNNCTG	1 cut(s)	527
Cfr13I	GGNCC	3 cut(s)	65, 144, 237
CviAII	CATG	3 cut(s)	224, 316, 323
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	3 cut(s)	193, 231, 338
DpnII	GATC	3 cut(s)	191, 229, 336
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	3 cut(s)	175, 201, 533
EarI	CTCTTC	3 cut(s)	175, 201, 533
Eco47I	GGWCC	1 cut(s)	144
Eco72I	CACGTG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	3 cut(s)	227, 319, 326
FatI	CATG	3 cut(s)	223, 315, 322
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	303, 306
Fsp4HI	GCNGC	2 cut(s)	303, 306
GluI	GCNGC	2 cut(s)	303, 306
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	66, 128, 239
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	227, 319, 326
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	135, 203, 446
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	3 cut(s)	144, 267, 313
Hpy188I	TCNGA	2 cut(s)	62, 290
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	144, 267, 313
HpyAV	CCTTC	2 cut(s)	31, 285
HpyCH4IV	ACGT	2 cut(s)	140, 273
HpyCH4V	TGCA	3 cut(s)	308, 472, 585
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	2 cut(s)	140, 273
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	227, 319, 326
Kzo9I	GATC	3 cut(s)	191, 229, 336
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	2 cut(s)	112, 523
Lsp1109I	GCAGC	2 cut(s)	289, 292
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	2 cut(s)	140, 273
MalI	GATC	3 cut(s)	193, 231, 338
MboI	GATC	3 cut(s)	191, 229, 336
MboII	GAAGA	3 cut(s)	162, 188, 550
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	37, 532, 553
MluNI	TGGCCA	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	40, 56
MnlI	CCTC	5 cut(s)	56, 178, 397, 406, 504
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	191, 229, 336
NlaIII	CATG	3 cut(s)	227, 319, 326
NlaIV	GGNNCC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	135, 203, 446
PkrI	GCNGC	2 cut(s)	304, 307
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
Ppu21I	YACGTR	1 cut(s)	141
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	232
PspCI	CACGTG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	3 cut(s)	65, 144, 237
PstI	CTGCAG	2 cut(s)	310, 587
PstNI	CAGNNNCTG	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	533
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	3 cut(s)	191, 229, 336
Sau96I	GGNCC	3 cut(s)	65, 144, 237
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	8 cut(s)	51, 143, 149, 186, 276, 331, 372, 498
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	306, 583
SinI	GGWCC	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	365, 491
SmoI	CTYRAG	2 cut(s)	365, 491
Sse9I	AATT	3 cut(s)	37, 532, 553
SsiI	CCGC	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	232
TaiI	ACGT	2 cut(s)	143, 276
TasI	AATT	3 cut(s)	37, 532, 553
TfiI	GAWTC	3 cut(s)	135, 203, 446
TscAI	CASTG	2 cut(s)	75, 274
TseI	GCWGC	2 cut(s)	302, 305
TspRI	CASTG	2 cut(s)	75, 274
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	3 cut(s)	181, 329, 369
XmiI	GTMKAC	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.