Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Reverse (-)

5871476 .. 5877828

Gene Structure 6353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G110600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGCAGGTCTCTGGTATTCTCCCCAAACCTTCCTGTGAGATTTTCTCAAATACCAAGGTCAATTTTACCGCCCAATCAACCAAACCAGTCACTTTCACTGAACTCGAGGGAACAATTACAACATGGGTTTCAAAGATTTGGACTTTCATTTGCCAAACCCACGAGAACTCTCTGCACAAAAGCTGTGTTATCTGAAATTCCAAATCAGAAGCTGTATGTGAAAGTAGGCGCCAAATCAACTGGGCCAATACCAATTAGTCAGCTCATTGAAGTGGTTGAGAAGGCTGCAAAGACTGGTGCTGAGGTTGTGATGGATGCTGTTAATAAGCCTCGGAATATTACCTATAAAGGGCTGACAGACTTGGTCACTGACACAGATAAAAAGAGTGAAGCAACAATTTTAGAAGTTGTGAGAAAGAACTTCAAAGATCACCTTATTCTTGGAGAGGAGGGTGGAATTATTGGAGATAGTTCATCTGATTATCTGTGGTGCATTGATCCATTAGATGGAACAACAAATTTTGCACATGGTTATCCTAGCTTTGCAGTTTCTGTGGGAGTTCTATTTCGAGGAAAACCTGCTGCTGCCGCCGTGGTAGAGTTTGTTGGGGGCCCTATGTGTTGGAATACCCGCATATTTTCTGCTAGTGCTGGTGGCGGAGCATTTTGTAATGGTCAAAAAATTCACGTGAGTCAAACAGATGAGGTTGAGCGATCTCTTCTTGTTACCGGATTTGGTTATGAACATGATGACGCATGGACCACCAACATAGAGTTATTTAAGGAGTTTACTGACATCAGCAGGGGTGTTAGAAGGCTCGGTGCCGCTGCAGTAGACATGTGCCATGTAGCTCTTGGGATTGTAGAAGCATACTGGGAATATCGACTAAAGCCATGGGATATGGCAGCTGGTGTCTTGATAGTTGAAGAAGCTGGAGGACAGGTTACTCGCATGGATGGCGGAAACTTTTGTGTATTTGATAGATCTGTTTTGGTATCCAATGGTGTGCTGCATGGCAATCTTTTGGAGAGGATTGCACCTGCAACTGAGAAATTGAAGAGCAAAGGAATTGTTTTCTCATTGTGGTACAAGCCTGACGATTACACAACGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

374

Amino Acids

40.79

Weight (kDa)

6.41

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1051
Acc36I	ACCTGC	2 cut(s)	589, 1051
AccB1I	GGYRCC	2 cut(s)	230, 824
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	6 cut(s)	71, 591, 634, 660, 828, 963
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	3 cut(s)	198, 520, 684
AcvI	CACGTG	1 cut(s)	691
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	1091
AfiI	CCNNNNNNNGG	2 cut(s)	351, 509
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	5 cut(s)	134, 272, 427, 929, 1060
AluBI	AGCT	7 cut(s)	185, 214, 265, 543, 854, 911, 935
AluI	AGCT	7 cut(s)	185, 214, 265, 543, 854, 911, 935
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	2 cut(s)	214, 554
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	2 cut(s)	245, 613
ApaI	GGGCCC	1 cut(s)	617
ApeKI	GCWGC	6 cut(s)	287, 584, 587, 830, 908, 1012
ApoI	RAATTY	3 cut(s)	198, 520, 684
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	245, 613, 614, 762
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	617
BanI	GGYRCC	2 cut(s)	230, 824
BanII	GRGCYC	1 cut(s)	617
BauI	CACGAG	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	691
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	6 cut(s)	274, 571, 574, 817, 920, 999
BccI	CCATC	3 cut(s)	307, 503, 953
BceAI	ACGGC	1 cut(s)	578
BciVI	GTATCC	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	540, 648
BfmI	CTRYAG	1 cut(s)	831
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	2 cut(s)	589, 1051
BfuI	GTATCC	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	986
BisI	GCNGC	8 cut(s)	288, 585, 588, 591, 828, 831, 909, 1013
BlsI	GCNGC	8 cut(s)	289, 586, 589, 592, 829, 832, 910, 1014
Bme18I	GGWCC	1 cut(s)	762
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	4 cut(s)	245, 613, 614, 762
BmiI	GGNNCC	4 cut(s)	232, 614, 615, 826
BmrI	ACTGGG	2 cut(s)	252, 886
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	2 cut(s)	252, 886
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	957
Bpu10I	CCTNAGC	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	56, 332, 594, 896
BsaWI	WCCGGW	1 cut(s)	731
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 509
Bse1I	ACTGG	4 cut(s)	88, 247, 301, 881
BseDI	CCNNGG	4 cut(s)	56, 332, 594, 896
BseGI	GGATG	2 cut(s)	322, 964
BseLI	CCNNNNNNNGG	2 cut(s)	351, 509
BseMII	CTCAG	2 cut(s)	294, 1041
BseNI	ACTGG	4 cut(s)	88, 247, 301, 881
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	6 cut(s)	274, 571, 574, 817, 920, 999
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	247, 615
BshNI	GGYRCC	2 cut(s)	230, 824
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	351, 509
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	247, 615
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	106
Bsp120I	GGGCCC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	4 cut(s)	430, 499, 716, 986
Bsp19I	CCATGG	1 cut(s)	896
BspACI	CCGC	6 cut(s)	71, 591, 634, 660, 828, 963
BspANI	GGCC	2 cut(s)	247, 615
BspCNI	CTCAG	2 cut(s)	295, 1042
BspLI	GGNNCC	4 cut(s)	232, 614, 615, 826
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	2 cut(s)	589, 1051
BspPI	GGATC	1 cut(s)	494
BspQI	GCTCTTC	1 cut(s)	1055
BspT107I	GGYRCC	2 cut(s)	230, 824
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	4 cut(s)	88, 247, 301, 881
BssECI	CCNNGG	4 cut(s)	56, 332, 594, 896
BssMI	GATC	4 cut(s)	430, 499, 716, 986
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	56, 896
Bst2BI	CACGAG	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	726, 1055
BstACI	GRCGYC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	691
BstDEI	CTNAG	2 cut(s)	303, 1050
BstDSI	CCRYGG	2 cut(s)	594, 896
BstF5I	GGATG	2 cut(s)	322, 964
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	433, 502, 719, 989
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	4 cut(s)	430, 499, 716, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 960
BstNSI	RCATGY	1 cut(s)	844
BstSFI	CTRYAG	1 cut(s)	831
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	6 cut(s)	274, 571, 574, 817, 920, 999
BstX2I	RGATCY	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	986
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	247, 615
BtgI	CCRYGG	2 cut(s)	594, 896
BtsCI	GGATG	2 cut(s)	322, 964
BtsIMutI	CAGTG	2 cut(s)	98, 369
BveI	ACCTGC	2 cut(s)	589, 1051
CaiI	CAGNNNCTG	2 cut(s)	214, 554
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	4 cut(s)	245, 613, 614, 762
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	1090
CviAII	CATG	9 cut(s)	125, 530, 749, 759, 841, 848, 897, 955, 1016
CviQI	GTAC	1 cut(s)	1090
DdeI	CTNAG	2 cut(s)	303, 1050
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	4 cut(s)	432, 501, 718, 988
DpnII	GATC	4 cut(s)	430, 499, 716, 986
Eam1104I	CTCTTC	2 cut(s)	726, 1055
EarI	CTCTTC	2 cut(s)	726, 1055
EciI	GGCGGA	2 cut(s)	675, 978
Eco130I	CCWWGG	2 cut(s)	56, 896
Eco24I	GRGCYC	1 cut(s)	617
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	762
Eco72I	CACGTG	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	613, 614
EcoT14I	CCWWGG	2 cut(s)	56, 896
EcoT38I	GRGCYC	1 cut(s)	617
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	56, 896
FaeI	CATG	9 cut(s)	128, 533, 752, 762, 844, 851, 900, 958, 1019
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	9 cut(s)	124, 529, 748, 758, 840, 847, 896, 954, 1015
FauI	CCCGC	1 cut(s)	641
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	8 cut(s)	288, 585, 588, 591, 828, 831, 909, 1013
FokI	GGATG	2 cut(s)	329, 971
FriOI	GRGCYC	1 cut(s)	617
Fsp4HI	GCNGC	8 cut(s)	288, 585, 588, 591, 828, 831, 909, 1013
FspBI	CTAG	2 cut(s)	540, 648
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	8 cut(s)	288, 585, 588, 591, 828, 831, 909, 1013
GsuI	CTGGAG	1 cut(s)	957
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	247, 615
HapII	CCGG	1 cut(s)	732
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	9 cut(s)	128, 533, 752, 762, 844, 851, 900, 958, 1019
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	792, 838
Hpy188I	TCNGA	4 cut(s)	196, 210, 336, 481
Hpy188III	TCNNGA	1 cut(s)	919
Hpy8I	GTNNAC	2 cut(s)	792, 838
HpyAV	CCTTC	3 cut(s)	41, 277, 810
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	9 cut(s)	177, 290, 495, 527, 548, 833, 1015, 1040, 1046
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 960
HpyF3I	CTNAG	2 cut(s)	303, 1050
HpySE526I	ACGT	1 cut(s)	690
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	9 cut(s)	128, 533, 752, 762, 844, 851, 900, 958, 1019
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
Kzo9I	GATC	4 cut(s)	430, 499, 716, 986
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	6 cut(s)	274, 571, 574, 817, 920, 999
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	540, 648
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	4 cut(s)	90, 367, 727, 946
MalI	GATC	4 cut(s)	432, 501, 718, 988
MboI	GATC	4 cut(s)	430, 499, 716, 986
MboII	GAAGA	3 cut(s)	713, 941, 1072
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	1 cut(s)	617
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	9 cut(s)	102, 298, 342, 442, 445, 566, 700, 932, 1026
MseI	TTAA	2 cut(s)	324, 783
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	830, 911
MspI	CCGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	2 cut(s)	590, 960
NarI	GGCGCC	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	896
NdeII	GATC	4 cut(s)	430, 499, 716, 986
NlaIII	CATG	9 cut(s)	128, 533, 752, 762, 844, 851, 900, 958, 1019
NlaIV	GGNNCC	4 cut(s)	232, 614, 615, 826
NmuCI	GTSAC	2 cut(s)	90, 367
NspI	RCATGY	1 cut(s)	844
PaeR7I	CTCGAG	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	1051
PciI	ACATGT	1 cut(s)	840
PciSI	GCTCTTC	1 cut(s)	1055
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	8 cut(s)	289, 586, 589, 592, 829, 832, 910, 1014
PleI	GAGTC	1 cut(s)	702
PluTI	GGCGCC	1 cut(s)	234
PmaCI	CACGTG	1 cut(s)	691
PmlI	CACGTG	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	702
Ppu21I	YACGTR	1 cut(s)	691
PscI	ACATGT	1 cut(s)	840
PspCI	CACGTG	1 cut(s)	691
PspN4I	GGNNCC	4 cut(s)	232, 614, 615, 826
PspOMI	GGGCCC	1 cut(s)	613
PspPI	GGNCC	4 cut(s)	245, 613, 614, 762
PspXI	VCTCGAGB	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	2 cut(s)	214, 554
PsuI	RGATCY	1 cut(s)	986
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	1 cut(s)	1091
RsaNI	GTAC	1 cut(s)	1090
RseI	CAYNNNNRTG	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	2 cut(s)	324, 783
SatI	GCNGC	8 cut(s)	288, 585, 588, 591, 828, 831, 909, 1013
Sau3AI	GATC	4 cut(s)	430, 499, 716, 986
Sau96I	GGNCC	4 cut(s)	245, 613, 614, 762
SchI	GAGTC	1 cut(s)	703
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	831
SfoI	GGCGCC	1 cut(s)	232
Sfr274I	CTCGAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	762
SlaI	CTCGAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
SsiI	CCGC	6 cut(s)	71, 591, 634, 660, 828, 963
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	540, 648
StyI	CCWWGG	2 cut(s)	56, 896
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	3 cut(s)	107, 571, 886
TauI	GCSGC	2 cut(s)	593, 830
Tru1I	TTAA	2 cut(s)	324, 783
Tru9I	TTAA	2 cut(s)	324, 783
TscAI	CASTG	2 cut(s)	105, 376
TseFI	GTSAC	2 cut(s)	90, 367
TseI	GCWGC	6 cut(s)	287, 584, 587, 830, 908, 1012
Tsp45I	GTSAC	2 cut(s)	90, 367
TspDTI	ATGAA	3 cut(s)	138, 465, 759
TspRI	CASTG	2 cut(s)	105, 376
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	762
XapI	RAATTY	3 cut(s)	198, 520, 684
XceI	RCATGY	1 cut(s)	844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XhoI	CTCGAG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	2 cut(s)	540, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.