Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

25158147 .. 25159459

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23190.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAAATTGTAGTTCACTTTTCTCTCAGCAAAATCTTGGTGATCAGATGTGTGATTTCCATCATTCATAGAATTTGGTATTGCAATTTTGAACAGATAATTGAAGAGGCTGGAGGAAAGGTTATATGCATGGATGGCGGAAAATTTTCTGTATTTGATAGATCTGTCTTGGTATCCAATGATGTGCTGCACGGCAAGGTTAGTATTCTGCTTTATCCAGAATCCAATTACAATACCTTATGTGTTAAGATCGAACCACGGTTCTATAACCTTGTTCACAATTTATATAACCATTTACGAAGAGTCAAAAGCCAATTCAGTTCCCCTAACTTGATGTATGTTTCTACTCATGAAGTGGCAAGATTTCCTTTCCCTTTCCATTTTTTTCCCTCCAATTTTTGTGTTAGGGTAGTTCCTGTAAAAGACGCCATAGATTGTAATCATATTAAATGCACTAGTGCTTTTAGAAGGATTGCACCTGCAACAGAGAAATTGAAGAGCAAGGGAACAACCCCGAAGGTTACACAACAGACATTTGATGCACCTGACAGTTCTTTTTTCTTTGCTTTTGCCAATCGTGCTGAGAACATATCTTCCACCGGAAGATGGTCTCTCATTGTGACGTTCACTGTAAAGTACATTTCAAGCGCACATGATATATATATATATATTATAGGTTTAATTTCATATATTTACTTGTCATTTTATTTCAATTTCATACCACCGTTAAAAAATTTTTGTGTTGATGTTGTTGCTACATTTGTGACACGTGTATTTATAAAAAAAAACCCTGAACCCGGCAAGCAATGCAAGCTCTCGCCTTCACCTCTCTTCTGCAACACCAACACCATCCTCATCTTCTTCCTCCTTTTCACTCCCATTTTCTTCAATTCCAAACCTCCTAACCCCACAAATCCCCCAACTGGGTCTCCCCATTCCCATTCAATCCCCAATTCTCCCCCCCAAAAGTCCCAATCTTTCTCCACCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

332

Amino Acids

37.71

Weight (kDa)

9.41

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	779
AarI	CACCTGC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	72, 143, 733
AcvI	CACGTG	1 cut(s)	770
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	4 cut(s)	606, 797, 923, 924
AflIII	ACRYGT	2 cut(s)	767, 769
AgsI	TTSAA	7 cut(s)	92, 104, 496, 645, 712, 889, 945
AhlI	ACTAGT	1 cut(s)	455
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	1 cut(s)	814
AluI	AGCT	1 cut(s)	814
Alw26I	GTCTC	2 cut(s)	615, 933
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	3 cut(s)	72, 143, 733
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	2 cut(s)	52, 816
BbrPI	CACGTG	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	4 cut(s)	68, 128, 600, 857
BceAI	ACGGC	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	798
BcoDI	GTCTC	2 cut(s)	615, 933
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	798
BmrFI	CCNGG	1 cut(s)	798
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	933
BpmI	CTGGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	798
BsaAI	YACGTR	1 cut(s)	770
BsaBI	GATNNNNATC	2 cut(s)	59, 438
BsaHI	GRCGYC	1 cut(s)	426
BsaI	GGTCTC	2 cut(s)	615, 933
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	599
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 913, 943
Bsc4I	CCNNNNNNNGG	4 cut(s)	606, 797, 923, 924
Bse1I	ACTGG	1 cut(s)	928
Bse3DI	GCAATG	1 cut(s)	812
Bse8I	GATNNNNATC	2 cut(s)	59, 438
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	139, 849
BseJI	GATNNNNATC	2 cut(s)	59, 438
BseLI	CCNNNNNNNGG	4 cut(s)	606, 797, 923, 924
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	2 cut(s)	40, 573
BseNI	ACTGG	1 cut(s)	928
BseXI	GCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	600, 798
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	4 cut(s)	606, 797, 923, 924
BsmAI	GTCTC	2 cut(s)	615, 933
BsmFI	GGGAC	1 cut(s)	955
Bso31I	GGTCTC	2 cut(s)	615, 933
Bsp143I	GATC	3 cut(s)	42, 161, 249
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	39, 574
BspHI	TCATGA	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	491
BspTNI	GGTCTC	2 cut(s)	615, 933
BsrDI	GCAATG	1 cut(s)	812
BsrI	ACTGG	1 cut(s)	928
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	42, 161, 249
BssNI	GRCGYC	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	261, 551, 631, 726
Bst6I	CTCTTC	4 cut(s)	99, 295, 491, 836
BstACI	GRCGYC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	807
BstBAI	YACGTR	1 cut(s)	770
BstC8I	GCNNGC	2 cut(s)	803, 812
BstDEI	CTNAG	2 cut(s)	26, 582
BstDSI	CCRYGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	139, 849
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	3 cut(s)	45, 164, 252
BstMAI	GTCTC	2 cut(s)	615, 933
BstMBI	GATC	3 cut(s)	42, 161, 249
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 578, 807, 811
BstSCI	CCNGG	1 cut(s)	796
BstV1I	GCAGC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	139, 849
BtsIMutI	CAGTG	1 cut(s)	627
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	803, 812
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	650
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	3 cut(s)	130, 350, 653
CviJI	RGCY	3 cut(s)	110, 312, 814
CviKI_1	RGCY	3 cut(s)	110, 312, 814
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	2 cut(s)	26, 582
DpnI	GATC	3 cut(s)	44, 163, 251
DpnII	GATC	3 cut(s)	42, 161, 249
Eam1104I	CTCTTC	4 cut(s)	99, 295, 491, 836
EarI	CTCTTC	4 cut(s)	99, 295, 491, 836
EciI	GGCGGA	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	615, 933
Eco72I	CACGTG	1 cut(s)	770
EcoT22I	ATGCAT	1 cut(s)	131
FaeI	CATG	3 cut(s)	133, 353, 656
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	3 cut(s)	129, 349, 652
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	2 cut(s)	146, 836
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	132
HapII	CCGG	2 cut(s)	600, 798
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	3 cut(s)	133, 353, 656
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	221, 303
HpaII	CCGG	2 cut(s)	600, 798
HphI	GGTGA	2 cut(s)	52, 816
Hpy166II	GTNNAC	3 cut(s)	16, 277, 627
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	218, 350
Hpy8I	GTNNAC	3 cut(s)	16, 277, 627
HpyAV	CCTTC	3 cut(s)	462, 511, 831
HpyCH4III	ACNGT	4 cut(s)	261, 551, 631, 726
HpyCH4IV	ACGT	2 cut(s)	623, 769
HpyCH4V	TGCA	9 cut(s)	84, 129, 190, 453, 476, 482, 542, 810, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 578, 807, 811
HpyF3I	CTNAG	2 cut(s)	26, 582
HpySE526I	ACGT	2 cut(s)	623, 769
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	133, 353, 656
HspAI	GCGC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	42, 161, 249
LguI	GCTCTTC	1 cut(s)	491
LpnPI	CCDG	9 cut(s)	96, 231, 429, 492, 558, 613, 804, 811, 909
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	2 cut(s)	623, 769
MaeIII	GTNAC	3 cut(s)	520, 619, 763
MalI	GATC	3 cut(s)	44, 163, 251
MboI	GATC	3 cut(s)	42, 161, 249
MboII	GAAGA	9 cut(s)	116, 312, 508, 585, 615, 823, 850, 853, 877
MflI	RGATCY	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	100, 107, 400, 837, 863, 875, 909
Mph1103I	ATGCAT	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	4 cut(s)	246, 447, 680, 728
MspI	CCGG	2 cut(s)	600, 798
MspR9I	CCNGG	1 cut(s)	798
MwoI	GCNNNNNNNGC	4 cut(s)	135, 578, 807, 811
NciI	CCSGG	1 cut(s)	798
NdeII	GATC	3 cut(s)	42, 161, 249
NlaIII	CATG	3 cut(s)	133, 353, 656
NmuCI	GTSAC	2 cut(s)	619, 763
NsiI	ATGCAT	1 cut(s)	131
PagI	TCATGA	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	311
PmaCI	CACGTG	1 cut(s)	770
PmlI	CACGTG	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	779
PspCI	CACGTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	161
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	4 cut(s)	246, 447, 680, 728
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	3 cut(s)	42, 161, 249
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	529
SpeI	ACTAGT	1 cut(s)	455
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	796
TaaI	ACNGT	4 cut(s)	261, 551, 631, 726
TaiI	ACGT	2 cut(s)	626, 772
TaqI	TCGA	1 cut(s)	252
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	4 cut(s)	246, 447, 680, 728
Tru9I	TTAA	4 cut(s)	246, 447, 680, 728
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	2 cut(s)	619, 763
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	619, 763
TspDTI	ATGAA	5 cut(s)	17, 56, 366, 675, 706
TspRI	CASTG	1 cut(s)	634
XapI	RAATTY	3 cut(s)	72, 143, 733
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.