Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Reverse (-)

15385558 .. 15390610

Gene Structure 5053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG145700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGCAGGTCCCTGGTCTTCTCTACTAACTTTGCTCTGAGATTTTCTCAAAAACCCAGATCAATTTTACCCCCTAGTTTACCAAGCCACTCTATTTCCCTCAACTCAAGGCAGCAATTGCAACATGGGTCTCAAAGATTTGGACTTTCAATTTCCAAACCAACAAGAACGCTCTGCACCAAAGCTGTGCTATCTGAAATTCCAAATCAGAAGCAGTATGTGAAAGTGGGTGCCCAATCAGTTGGGCCCATCCCAGCTAGTCAGCTCATTGAAGTGGTTGAGAAGGCTGCTAAGACTGGTGCTGAGGTTGTGATGGATGCTGTTAACCAGCCTCGTAATATTACCTATAAGGGACTTACTGACCTGGTTACTGACACAGATAAAAAGAGCGAAGCAGCAATTTTAGAAGTTGTAAAAAAGAACTTTGGAGATCACCTTATTCTTGGAGAGGAGGGTGGAATTATTGGAGATACATCTTCTGACTATCTGTGGTGCATTGATCCATTAGATGGAACGACAAATTTTGCACATGGTTACCCTAGCTTTGCAGTTTCTGTGGGAGTTCTATTTCGAGGAAAACCTGCTGCTGCTGCTGTGGTAGAGTTTGTCGGAGGCCCAATGTGTTGGAATACTCGCATCTTTTCTGCTAGTGCTGGTGGGGGAGCATTTTGTAATGGCCAAAAGATTCACGTGAGTCAAACGGATAAGGTGGAACGATCTCTTCTTGTTACTGGGTTTGGTTATGAACATGATGATCCATGGGCCACGAACATAGAACTATTCAAAGAGTTCACTGACGTCAGCAGGGGTGTCAGAAGGCTCGGTGCTGCTGCAGTAGACATGTGCCATGTAGCTCTTGGGATCGTAGAAGCATACTGGGAATATCGACTAAAGCCATGGGATATGGCTGCTGGTGTTTTGGTAATGTTTGTTTTCTCAAAATGCATTTGTTGGGGTGGCATAGTTTTAATCCGCATTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

327

Amino Acids

35.6

Weight (kDa)

8.62

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	87 - 308	6.4e-64	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	801
Acc36I	ACCTGC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	1 cut(s)	973
AclWI	GGATC	3 cut(s)	494, 749, 869
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	198, 520
AcvI	CACGTG	1 cut(s)	691
AcyI	GRCGYC	1 cut(s)	798
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	3 cut(s)	150, 272, 784
AjnI	CCWGG	2 cut(s)	12, 363
AluBI	AGCT	5 cut(s)	185, 257, 265, 543, 854
AluI	AGCT	5 cut(s)	185, 257, 265, 543, 854
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	494, 749, 869
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	245, 613, 676, 762
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	9 cut(s)	112, 287, 395, 584, 587, 590, 827, 830, 908
ApoI	RAATTY	2 cut(s)	198, 520
AspS9I	GGNCC	5 cut(s)	9, 245, 246, 614, 762
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	2 cut(s)	235, 249
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	691
BbsI	GAAGAC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	9 cut(s)	124, 274, 407, 571, 574, 577, 814, 817, 895
BccI	CCATC	3 cut(s)	257, 307, 503
BciT130I	CCWGG	2 cut(s)	14, 365
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	4 cut(s)	75, 258, 540, 648
BfmI	CTRYAG	1 cut(s)	831
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	9 cut(s)	113, 288, 396, 585, 588, 591, 828, 831, 909
BlsI	GCNGC	9 cut(s)	114, 289, 397, 586, 589, 592, 829, 832, 910
Bme1390I	CCNGG	2 cut(s)	14, 365
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	5 cut(s)	9, 245, 246, 614, 762
BmiI	GGNNCC	3 cut(s)	11, 232, 247
BmrFI	CCNGG	2 cut(s)	14, 365
BmrI	ACTGGG	2 cut(s)	741, 886
BmsI	GCATC	2 cut(s)	307, 645
BmuI	ACTGGG	2 cut(s)	741, 886
BpiI	GAAGAC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	12, 758, 896
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	301, 736, 881
BseBI	CCWGG	2 cut(s)	14, 365
BseDI	CCNNGG	3 cut(s)	12, 758, 896
BseGI	GGATG	2 cut(s)	249, 322
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	2 cut(s)	29, 294
BseNI	ACTGG	3 cut(s)	301, 736, 881
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	2 cut(s)	235, 249
BseXI	GCAGC	9 cut(s)	124, 274, 407, 571, 574, 577, 814, 817, 895
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	247, 615, 678, 764
BshNI	GGYRCC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	4 cut(s)	247, 615, 678, 764
Bso31I	GGTCTC	1 cut(s)	135
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	235, 249
Bsp143I	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
Bsp19I	CCATGG	2 cut(s)	758, 896
BspACI	CCGC	1 cut(s)	973
BspANI	GGCC	4 cut(s)	247, 615, 678, 764
BspCNI	CTCAG	2 cut(s)	30, 295
BspLI	GGNNCC	3 cut(s)	11, 232, 247
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	3 cut(s)	494, 749, 869
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	135
BsrI	ACTGG	3 cut(s)	301, 736, 881
BssECI	CCNNGG	3 cut(s)	12, 758, 896
BssMI	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
BssNI	GRCGYC	1 cut(s)	798
BssT1I	CCWWGG	2 cut(s)	758, 896
Bst2UI	CCWGG	2 cut(s)	14, 365
Bst6I	CTCTTC	1 cut(s)	726
BstACI	GRCGYC	1 cut(s)	798
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	691
BstDEI	CTNAG	3 cut(s)	38, 291, 303
BstDSI	CCRYGG	2 cut(s)	758, 896
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	249, 322
BstKTI	GATC	6 cut(s)	62, 433, 502, 719, 757, 864
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 590
BstNI	CCWGG	2 cut(s)	14, 365
BstNSI	RCATGY	1 cut(s)	844
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	12, 363
BstSFI	CTRYAG	1 cut(s)	831
BstSLI	GKGCMC	2 cut(s)	235, 249
BstV1I	GCAGC	9 cut(s)	124, 274, 407, 571, 574, 577, 814, 817, 895
BstV2I	GAAGAC	1 cut(s)	10
BstXI	CCANNNNNNTGG	2 cut(s)	242, 624
BsuRI	GGCC	4 cut(s)	247, 615, 678, 764
BtgI	CCRYGG	2 cut(s)	758, 896
BtsCI	GGATG	2 cut(s)	249, 322
BtsIMutI	CAGTG	1 cut(s)	792
BveI	ACCTGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	554
Cfr13I	GGNCC	5 cut(s)	9, 245, 246, 614, 762
CsiI	ACCWGGT	1 cut(s)	363
CviAII	CATG	7 cut(s)	125, 530, 749, 759, 841, 848, 897
DdeI	CTNAG	3 cut(s)	38, 291, 303
DpnI	GATC	6 cut(s)	61, 432, 501, 718, 756, 863
DpnII	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco130I	CCWWGG	2 cut(s)	758, 896
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	9
Eco72I	CACGTG	1 cut(s)	691
Eco91I	GGTNACC	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	9
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	12, 363
EcoT14I	CCWWGG	2 cut(s)	758, 896
EcoT22I	ATGCAT	1 cut(s)	947
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	758, 896
FaeI	CATG	7 cut(s)	128, 533, 752, 762, 844, 851, 900
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	7 cut(s)	124, 529, 748, 758, 840, 847, 896
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	9 cut(s)	113, 288, 396, 585, 588, 591, 828, 831, 909
FokI	GGATG	2 cut(s)	236, 329
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	9 cut(s)	113, 288, 396, 585, 588, 591, 828, 831, 909
FspBI	CTAG	4 cut(s)	75, 258, 540, 648
GluI	GCNGC	9 cut(s)	113, 288, 396, 585, 588, 591, 828, 831, 909
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	247, 615, 678, 764
Hin1I	GRCGYC	1 cut(s)	798
Hin1II	CATG	7 cut(s)	128, 533, 752, 762, 844, 851, 900
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	685, 694
HpaI	GTTAAC	1 cut(s)	325
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	4 cut(s)	80, 325, 792, 838
Hpy188I	TCNGA	6 cut(s)	39, 196, 210, 481, 611, 815
Hpy8I	GTNNAC	4 cut(s)	80, 325, 792, 838
HpyAV	CCTTC	2 cut(s)	277, 810
HpyCH4IV	ACGT	2 cut(s)	690, 798
HpyCH4V	TGCA	7 cut(s)	121, 177, 495, 527, 548, 833, 945
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 590
HpyF3I	CTNAG	3 cut(s)	38, 291, 303
HpySE526I	ACGT	2 cut(s)	690, 798
Hsp92I	GRCGYC	1 cut(s)	798
Hsp92II	CATG	7 cut(s)	128, 533, 752, 762, 844, 851, 900
KspAI	GTTAAC	1 cut(s)	325
Kzo9I	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	9 cut(s)	124, 274, 407, 571, 574, 577, 814, 817, 895
LweI	GCATC	2 cut(s)	307, 645
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	4 cut(s)	75, 258, 540, 648
MaeII	ACGT	2 cut(s)	690, 798
MaeIII	GTNAC	3 cut(s)	367, 533, 727
MalI	GATC	6 cut(s)	61, 432, 501, 718, 756, 863
MboI	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
MboII	GAAGA	3 cut(s)	10, 468, 713
MfeI	CAATTG	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	235, 249
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	7 cut(s)	63, 116, 150, 198, 399, 459, 520
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	2 cut(s)	589, 605
MnlI	CCTC	7 cut(s)	110, 298, 342, 442, 445, 566, 605
Mox20I	TGGCCA	1 cut(s)	678
Mph1103I	ATGCAT	1 cut(s)	947
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	324, 968
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	678
MspR9I	CCNGG	2 cut(s)	14, 365
MunI	CAATTG	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	14, 365
MwoI	GCNNNNNNNGC	2 cut(s)	118, 590
NcoI	CCATGG	2 cut(s)	758, 896
NdeII	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
NlaIII	CATG	7 cut(s)	128, 533, 752, 762, 844, 851, 900
NlaIV	GGNNCC	3 cut(s)	11, 232, 247
NsiI	ATGCAT	1 cut(s)	947
NspI	RCATGY	1 cut(s)	844
PciI	ACATGT	1 cut(s)	840
PfeI	GAWTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	9 cut(s)	114, 289, 397, 586, 589, 592, 829, 832, 910
PleI	GAGTC	1 cut(s)	702
PmaCI	CACGTG	1 cut(s)	691
PmlI	CACGTG	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	702
Ppu21I	YACGTR	1 cut(s)	691
PpuMI	RGGWCCY	1 cut(s)	9
PscI	ACATGT	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	12, 363
PspCI	CACGTG	1 cut(s)	691
PspEI	GGTNACC	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	12, 363
PspN4I	GGNNCC	3 cut(s)	11, 232, 247
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	5 cut(s)	9, 245, 246, 614, 762
PspPPI	RGGWCCY	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	324, 968
SatI	GCNGC	9 cut(s)	113, 288, 396, 585, 588, 591, 828, 831, 909
Sau3AI	GATC	6 cut(s)	59, 430, 499, 716, 754, 861
Sau96I	GGNCC	5 cut(s)	9, 245, 246, 614, 762
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	14, 365
SduI	GDGCHC	2 cut(s)	235, 249
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	307, 645
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	7 cut(s)	63, 116, 150, 198, 399, 459, 520
SsiI	CCGC	1 cut(s)	973
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	4 cut(s)	75, 258, 540, 648
StyD4I	CCNGG	2 cut(s)	12, 363
StyI	CCWWGG	2 cut(s)	758, 896
TaiI	ACGT	2 cut(s)	693, 801
TaqI	TCGA	2 cut(s)	571, 886
TasI	AATT	7 cut(s)	63, 116, 150, 198, 399, 459, 520
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	2 cut(s)	324, 968
Tru9I	TTAA	2 cut(s)	324, 968
TscAI	CASTG	1 cut(s)	799
TseI	GCWGC	9 cut(s)	112, 287, 395, 584, 587, 590, 827, 830, 908
TspDTI	ATGAA	1 cut(s)	759
TspGWI	ACGGA	1 cut(s)	716
TspRI	CASTG	1 cut(s)	799
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	2 cut(s)	198, 520
XceI	RCATGY	1 cut(s)	844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	4 cut(s)	75, 258, 540, 648
ZraI	GACGTC	1 cut(s)	799
Zsp2I	ATGCAT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.