Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

25138828 .. 25141647

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23120.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGCAGGTCCCTGGTTTTCTCCACAAACGTTCCTCTCAGAATTTCTCAAATACCCAGATCAATTTTACCTCCCAATCGACCAGGTTACTCACTTTTTCTGAATCCAAAGCAAAAATTGCAACATGGGTTTCAAAGATTTGGACTTTCGATTGCCAAACCGACGAGAAAACTCTGCACAAAGGCCGTGTTGTCTGGAATTCCAAACCACGAGCTGTATGTGAAAGTTGGCGCCAAATCAACCGGACCAATTCCAATTGGTCAGCTCGTTGGAGTGGTTGAGAAGGCCGCTAAGACTGGCGCTGAGGTTGTGATGAATGCTGTTAATAAGCCTCGGAATATCACCTATAAAGGAGTAGCGGACTTGGTCACTGACACAGATAAAAAGAGTGAAGCCACAATTTTAGAAGTTCTGAGAAAGAACTTTGAAGATCACCTTATTCTTGGAGAGGAGGGTGGAATAACTGGGGATGCATCATCTGATTATATGTGGTGCATCGATCCTTTAGATGGAACAACAAATTTCGCACATGGTTATCCTAGCTTTGCAGTTTCTGTTGGAGTTTTATTTCGAGGAAAACCTGTTGCTGCTGCCGTGGTTGAGTTCGTTGGGGGCCCTATGTGTTGGAATACCCGCATTTTTTCTGCTAGTGCTGGAGGGGGAGCATTTTGTAATGGCCAAAAAATTCATGTGAGCCAAACTGATGAGGTGGGACGGTCTCTTCTTGTTACTGGATTTGGTTATGAACATGATGACGTATGGATCGACCAACATAGAGTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

262

Amino Acids

28.21

Weight (kDa)

9.0

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	3 cut(s)	288, 359, 634
AclI	AACGTT	1 cut(s)	30
AclWI	GGATC	2 cut(s)	494, 770
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	4 cut(s)	42, 198, 520, 684
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	134, 428
AjnI	CCWGG	2 cut(s)	12, 82
AluBI	AGCT	3 cut(s)	214, 265, 543
AluI	AGCT	3 cut(s)	214, 265, 543
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	2 cut(s)	494, 770
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	183, 285, 613, 676
ApaI	GGGCCC	1 cut(s)	617
ApeKI	GCWGC	2 cut(s)	587, 590
ApoI	RAATTY	4 cut(s)	42, 198, 520, 684
AspLEI	GCGC	2 cut(s)	233, 302
AspS9I	GGNCC	4 cut(s)	9, 245, 613, 614
AsuHPI	GGTGA	2 cut(s)	334, 425
AvaII	GGWCC	2 cut(s)	9, 245
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	617
BauI	CACGAG	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	574, 577
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	2 cut(s)	170, 578
BciT130I	CCWGG	2 cut(s)	14, 84
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	540, 648
BfoI	RGCGCY	2 cut(s)	234, 303
BisI	GCNGC	3 cut(s)	288, 588, 591
BlsI	GCNGC	3 cut(s)	289, 589, 592
Bme1390I	CCNGG	2 cut(s)	14, 84
Bme18I	GGWCC	2 cut(s)	9, 245
BmgT120I	GGNCC	4 cut(s)	9, 245, 613, 614
BmiI	GGNNCC	4 cut(s)	11, 232, 614, 615
BmrFI	CCNGG	2 cut(s)	14, 84
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	3 cut(s)	460, 482, 504
BmuI	ACTGGG	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	3 cut(s)	12, 332, 594
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	301, 469, 736
BseBI	CCWGG	2 cut(s)	14, 84
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	12, 332, 594
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	3 cut(s)	52, 294, 404
BseNI	ACTGG	3 cut(s)	301, 469, 736
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	574, 577
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	185, 287, 615, 678
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	185, 287, 615, 678
Bso31I	GGTCTC	1 cut(s)	723
Bsp120I	GGGCCC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	4 cut(s)	59, 430, 499, 762
BspACI	CCGC	3 cut(s)	288, 359, 634
BspANI	GGCC	4 cut(s)	185, 287, 615, 678
BspCNI	CTCAG	3 cut(s)	51, 295, 405
BspDI	ATCGAT	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	11, 232, 614, 615
BspPI	GGATC	2 cut(s)	494, 770
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	723
BsrI	ACTGG	3 cut(s)	301, 469, 736
BssECI	CCNNGG	3 cut(s)	12, 332, 594
BssMI	GATC	4 cut(s)	59, 430, 499, 762
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	14, 84
Bst4CI	ACNGT	1 cut(s)	717
Bst6I	CTCTTC	1 cut(s)	726
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	38, 291, 303, 413
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	475
BstH2I	RGCGCY	2 cut(s)	234, 303
BstHHI	GCGC	2 cut(s)	233, 302
BstKTI	GATC	4 cut(s)	62, 433, 502, 765
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	4 cut(s)	59, 430, 499, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	14, 84
BstSCI	CCNGG	2 cut(s)	12, 82
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	574, 577
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	185, 287, 615, 678
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	369
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	233, 302
Cfr13I	GGNCC	4 cut(s)	9, 245, 613, 614
ClaI	ATCGAT	1 cut(s)	498
CsiI	ACCWGGT	1 cut(s)	82
CviAII	CATG	4 cut(s)	125, 530, 689, 749
DdeI	CTNAG	4 cut(s)	38, 291, 303, 413
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	4 cut(s)	61, 432, 501, 764
DpnII	GATC	4 cut(s)	59, 430, 499, 762
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco24I	GRGCYC	1 cut(s)	617
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	9, 245
EcoO109I	RGGNCCY	3 cut(s)	9, 613, 614
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	12, 82
EcoT22I	ATGCAT	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	617
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	4 cut(s)	128, 533, 692, 752
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	4 cut(s)	124, 529, 688, 748
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	3 cut(s)	288, 588, 591
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	617
Fsp4HI	GCNGC	3 cut(s)	288, 588, 591
FspBI	CTAG	2 cut(s)	540, 648
GlaI	GCGC	2 cut(s)	232, 301
GluI	GCNGC	3 cut(s)	288, 588, 591
GsuI	CTGGAG	1 cut(s)	675
HaeII	RGCGCY	2 cut(s)	234, 303
HaeIII	GGCC	4 cut(s)	185, 287, 615, 678
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	2 cut(s)	233, 302
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	128, 533, 692, 752
Hin6I	GCGC	2 cut(s)	231, 300
HinP1I	GCGC	2 cut(s)	231, 300
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	334, 425
Hpy188I	TCNGA	5 cut(s)	41, 102, 336, 414, 481
Hpy188III	TCNNGA	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	717
HpyCH4IV	ACGT	2 cut(s)	30, 756
HpyCH4V	TGCA	5 cut(s)	121, 177, 473, 495, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	4 cut(s)	38, 291, 303, 413
HpySE526I	ACGT	2 cut(s)	30, 756
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	128, 533, 692, 752
HspAI	GCGC	2 cut(s)	231, 300
KasI	GGCGCC	1 cut(s)	230
Kzo9I	GATC	4 cut(s)	59, 430, 499, 762
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	2 cut(s)	574, 577
LweI	GCATC	3 cut(s)	460, 482, 504
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	2 cut(s)	540, 648
MaeII	ACGT	2 cut(s)	30, 756
MaeIII	GTNAC	3 cut(s)	86, 367, 727
MalI	GATC	4 cut(s)	61, 432, 501, 764
MboI	GATC	4 cut(s)	59, 430, 499, 762
MboII	GAAGA	2 cut(s)	440, 713
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	617
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	9 cut(s)	42, 63, 116, 198, 249, 255, 399, 520, 684
MluNI	TGGCCA	1 cut(s)	678
Mly113I	GGCGCC	1 cut(s)	231
MmeI	TCCRAC	3 cut(s)	250, 538, 605
MnlI	CCTC	9 cut(s)	45, 81, 298, 342, 442, 445, 566, 650, 700
Mox20I	TGGCCA	1 cut(s)	678
Mph1103I	ATGCAT	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	324, 784
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	14, 84
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	14, 84
MwoI	GCNNNNNNNGC	1 cut(s)	118
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	4 cut(s)	59, 430, 499, 762
NlaIII	CATG	4 cut(s)	128, 533, 692, 752
NlaIV	GGNNCC	4 cut(s)	11, 232, 614, 615
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	289, 589, 592
PluTI	GGCGCC	1 cut(s)	234
PpuMI	RGGWCCY	1 cut(s)	9
Psp1406I	AACGTT	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	12, 82
PspGI	CCWGG	2 cut(s)	12, 82
PspN4I	GGNNCC	4 cut(s)	11, 232, 614, 615
PspOMI	GGGCCC	1 cut(s)	613
PspPI	GGNCC	4 cut(s)	9, 245, 613, 614
PspPPI	RGGWCCY	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	324, 784
SatI	GCNGC	3 cut(s)	288, 588, 591
Sau3AI	GATC	4 cut(s)	59, 430, 499, 762
Sau96I	GGNCC	4 cut(s)	9, 245, 613, 614
ScrFI	CCNGG	2 cut(s)	14, 84
SduI	GDGCHC	1 cut(s)	617
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	3 cut(s)	460, 482, 504
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	2 cut(s)	9, 245
Sse9I	AATT	9 cut(s)	42, 63, 116, 198, 249, 255, 399, 520, 684
SsiI	CCGC	3 cut(s)	288, 359, 634
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	540, 648
StyD4I	CCNGG	2 cut(s)	12, 82
TaaI	ACNGT	1 cut(s)	717
TaiI	ACGT	2 cut(s)	33, 759
TaqI	TCGA	5 cut(s)	79, 149, 498, 571, 765
TasI	AATT	9 cut(s)	42, 63, 116, 198, 249, 255, 399, 520, 684
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	324, 784
Tru9I	TTAA	2 cut(s)	324, 784
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	587, 590
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	329, 677, 759
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	9, 245
XapI	RAATTY	4 cut(s)	42, 198, 520, 684
XspI	CTAG	2 cut(s)	540, 648
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.