Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

25156272 .. 25157145

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23170.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTTTCACTAGTGTGTGTTTATGACGCTTCAATTGACTTGTTGAAAGTTACATGTAAAGGTCGAACCTTTTACAAGCAAGATTCACTAATCATGAAGGAAAATTCACTTATCATGTTTTCATGTGATATGAAAACTATTTGCAGCACAGATAAAAAGAGTGAAGCCACAATTTTAGAAGTTGTGGGTGGAATAACTGGAGATGTATCATCTGATTATATGTGGTGCATTGATCCTATCTGGGGTGTGATATCCACACACCCTATTTTACTTCTCACACACCTTTTTAATTTTCGGTTTATCAAGGGGTGTGTGAGAAGTAAAATGGGGTGTGTGGATAGCACACCCCTATCTTCTAAGGTGCACTATAGGTGTGGTTTCATGATATTAGCGTTTCGGAACATGATTTACTGTAAATTTTTCAGCCTTCATAATTCTTACCTCAATACTTTTGACTTTGACATTTTCATAACCAATGGTAACTCATATATATATATATATGAATGTTTAGAGAAGAACTTTCTGATGGCTGATATGAAATTGGAAAGAGCTATTAGGGTGGTAGCTGGGGTAGCGTTTTATATCCCTACCTTTTTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

201

Amino Acids

22.95

Weight (kDa)

7.49

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	103, 416
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	33, 46
AhlI	ACTAGT	1 cut(s)	10
AleI	CACNNNNGTG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	551, 566
AluI	AGCT	2 cut(s)	551, 566
Alw21I	GWGCWC	1 cut(s)	366
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	227
ApaLI	GTGCAC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	103, 416
BaeGI	GKGCMC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	520
BcuI	ACTAGT	1 cut(s)	10
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	367
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	232
BspHI	TCATGA	2 cut(s)	93, 381
BspPI	GGATC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	357
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	156
CciI	TCATGA	2 cut(s)	93, 381
CseI	GACGC	1 cut(s)	35
CviAII	CATG	6 cut(s)	54, 94, 115, 123, 382, 403
CviJI	RGCY	5 cut(s)	167, 426, 530, 551, 566
CviKI_1	RGCY	5 cut(s)	167, 426, 530, 551, 566
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	252
FaeI	CATG	6 cut(s)	57, 97, 118, 126, 385, 406
FatI	CATG	6 cut(s)	53, 93, 114, 122, 381, 402
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	570
GsuI	CTGGAG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	6 cut(s)	57, 97, 118, 126, 385, 406
HinfI	GANTC	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	214, 399, 525
Hpy188III	TCNNGA	2 cut(s)	94, 382
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	91, 437
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	144, 228, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	57, 97, 118, 126, 385, 406
Kzo9I	GATC	1 cut(s)	232
LpnPI	CCDG	3 cut(s)	183, 226, 552
Lsp1109I	GCAGC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	49, 479
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	345, 526
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	7 cut(s)	33, 103, 171, 289, 416, 433, 539
MnlI	CCTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	6 cut(s)	57, 97, 118, 126, 385, 406
NspI	RCATGY	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	13
PagI	TCATGA	2 cut(s)	93, 381
PciI	ACATGT	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	146
PscI	ACATGT	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	566
PsrI	GAACNNNNNNTAC	2 cut(s)	392, 424
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	64, 71, 285, 363, 374, 444, 553, 568, 593
SfcI	CTRYAG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	10
Sse9I	AATT	7 cut(s)	33, 103, 171, 289, 416, 433, 539
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	64
TasI	AATT	7 cut(s)	33, 103, 171, 289, 416, 433, 539
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	8 cut(s)	110, 111, 146, 370, 419, 457, 516, 551
VneI	GTGCAC	1 cut(s)	362
XapI	RAATTY	2 cut(s)	103, 416
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.