Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040607.1

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1702

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggtctgcactaaatcacttgccaaattgttcaagactttgaaattcttacctcagaaattttatatttgtaaatggaagttcagagatggactttctagtgactccaagtatggaaagacctcttgggtggtcaatggaacgacaaattttgcacatggttaccctagctttgcagtttctgtgggagttctatttcgaggaaaacctgctgctgctgctgtggtagagtttgtcggaggcccaatgtgttggaatactcgcatcttttctgctagtgctggtgggggagcattttgtaatggccaaaagattcacgtgagtcaaacggataaggtggaacgatctcttcttgttactgggtttggttatgaacatgatgatccatgggccacgaacatagaactattcaaagagttcactgacgtcagcaggggtgtcagaaggctcggtgctgctgcagtagacatgtgccatgtagctcttgggatcgtagaagcatactgggaatatcgactaaagccatgggatatggctgctggtgttttgatagttgaggaagctggaggagtggttacctgcatggatggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

197

Amino Acids

21.57

Weight (kDa)

8.71

Isoelectric Point (pI)

19.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
Acc36I	ACCTGC	2 cut(s)	217, 587
AccI	GTMKAC	1 cut(s)	465
AclWI	GGATC	2 cut(s)	377, 497
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	3 cut(s)	44, 59, 148
AcvI	CACGTG	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	34, 43, 412
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	3 cut(s)	171, 482, 563
AluI	AGCT	3 cut(s)	171, 482, 563
AlwI	GGATC	2 cut(s)	377, 497
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	241, 304, 390
ApeKI	GCWGC	6 cut(s)	212, 215, 218, 455, 458, 536
ApoI	RAATTY	3 cut(s)	44, 59, 148
AspS9I	GGNCC	2 cut(s)	242, 390
BalI	TGGCCA	1 cut(s)	306
BbrPI	CACGTG	1 cut(s)	319
BbvI	GCAGC	6 cut(s)	199, 202, 205, 442, 445, 523
BccI	CCATC	2 cut(s)	83, 581
BfaI	CTAG	3 cut(s)	99, 168, 276
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	2 cut(s)	217, 587
BisI	GCNGC	6 cut(s)	213, 216, 219, 456, 459, 537
BlsI	GCNGC	6 cut(s)	214, 217, 220, 457, 460, 538
BmgT120I	GGNCC	2 cut(s)	242, 390
BmrI	ACTGGG	2 cut(s)	369, 514
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	2 cut(s)	369, 514
BpmI	CTGGAG	1 cut(s)	585
BsaAI	YACGTR	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	386, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bse1I	ACTGG	2 cut(s)	364, 509
BseDI	CCNNGG	2 cut(s)	386, 524
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	364, 509
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	6 cut(s)	199, 202, 205, 442, 445, 523
BshFI	GGCC	3 cut(s)	243, 306, 392
BsnI	GGCC	3 cut(s)	243, 306, 392
Bsp143I	GATC	3 cut(s)	344, 382, 489
Bsp19I	CCATGG	2 cut(s)	386, 524
BspANI	GGCC	3 cut(s)	243, 306, 392
BspCNI	CTCAG	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	2 cut(s)	217, 587
BspPI	GGATC	2 cut(s)	377, 497
BsrI	ACTGG	2 cut(s)	364, 509
BssECI	CCNNGG	2 cut(s)	386, 524
BssMI	GATC	3 cut(s)	344, 382, 489
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	2 cut(s)	386, 524
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	2 cut(s)	386, 524
BstEII	GGTNACC	2 cut(s)	161, 574
BstKTI	GATC	3 cut(s)	347, 385, 492
BstMBI	GATC	3 cut(s)	344, 382, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	472
BstPI	GGTNACC	2 cut(s)	161, 574
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	6 cut(s)	199, 202, 205, 442, 445, 523
BstXI	CCANNNNNNTGG	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	243, 306, 392
BtgI	CCRYGG	2 cut(s)	386, 524
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	2 cut(s)	217, 587
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	242, 390
CviAII	CATG	7 cut(s)	158, 377, 387, 469, 476, 525, 583
CviJI	RGCY	9 cut(s)	171, 243, 306, 392, 448, 482, 523, 536, 563
CviKI_1	RGCY	9 cut(s)	171, 243, 306, 392, 448, 482, 523, 536, 563
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	346, 384, 491
DpnII	GATC	3 cut(s)	344, 382, 489
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	386, 524
Eco72I	CACGTG	1 cut(s)	319
Eco91I	GGTNACC	2 cut(s)	161, 574
EcoO65I	GGTNACC	2 cut(s)	161, 574
EcoT14I	CCWWGG	2 cut(s)	386, 524
ErhI	CCWWGG	2 cut(s)	386, 524
FaeI	CATG	7 cut(s)	161, 380, 390, 472, 479, 528, 586
FatI	CATG	7 cut(s)	157, 376, 386, 468, 475, 524, 582
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	6 cut(s)	213, 216, 219, 456, 459, 537
Fsp4HI	GCNGC	6 cut(s)	213, 216, 219, 456, 459, 537
FspBI	CTAG	3 cut(s)	99, 168, 276
GluI	GCNGC	6 cut(s)	213, 216, 219, 456, 459, 537
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	243, 306, 392
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	7 cut(s)	161, 380, 390, 472, 479, 528, 586
HinfI	GANTC	3 cut(s)	104, 313, 322
Hpy166II	GTNNAC	2 cut(s)	420, 466
Hpy188I	TCNGA	4 cut(s)	57, 86, 239, 443
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	420, 466
HpyAV	CCTTC	1 cut(s)	438
HpyCH4IV	ACGT	2 cut(s)	318, 426
HpyCH4V	TGCA	5 cut(s)	9, 155, 176, 461, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	318, 426
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	7 cut(s)	161, 380, 390, 472, 479, 528, 586
Kzo9I	GATC	3 cut(s)	344, 382, 489
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	7 cut(s)	222, 267, 345, 418, 490, 525, 549
Lsp1109I	GCAGC	6 cut(s)	199, 202, 205, 442, 445, 523
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	3 cut(s)	99, 168, 276
MaeII	ACGT	2 cut(s)	318, 426
MaeIII	GTNAC	4 cut(s)	101, 161, 355, 574
MalI	GATC	3 cut(s)	346, 384, 491
MboI	GATC	3 cut(s)	344, 382, 489
MboII	GAAGA	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	4 cut(s)	26, 44, 59, 148
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	98, 331
MmeI	TCCRAC	2 cut(s)	217, 233
MnlI	CCTC	6 cut(s)	63, 133, 194, 233, 550, 560
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	2 cut(s)	386, 524
NdeII	GATC	3 cut(s)	344, 382, 489
NlaIII	CATG	7 cut(s)	161, 380, 390, 472, 479, 528, 586
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	472
PciI	ACATGT	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	6 cut(s)	214, 217, 220, 457, 460, 538
PleI	GAGTC	2 cut(s)	98, 330
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	2 cut(s)	98, 330
Ppu21I	YACGTR	1 cut(s)	319
PscI	ACATGT	1 cut(s)	468
PspCI	CACGTG	1 cut(s)	319
PspEI	GGTNACC	2 cut(s)	161, 574
PspPI	GGNCC	2 cut(s)	242, 390
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	182
SatI	GCNGC	6 cut(s)	213, 216, 219, 456, 459, 537
Sau3AI	GATC	3 cut(s)	344, 382, 489
Sau96I	GGNCC	2 cut(s)	242, 390
SchI	GAGTC	2 cut(s)	98, 331
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	459
Sse9I	AATT	4 cut(s)	26, 44, 59, 148
SspMI	CTAG	3 cut(s)	99, 168, 276
StyI	CCWWGG	2 cut(s)	386, 524
TaiI	ACGT	2 cut(s)	321, 429
TaqI	TCGA	2 cut(s)	199, 514
TasI	AATT	4 cut(s)	26, 44, 59, 148
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	6 cut(s)	212, 215, 218, 455, 458, 536
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	3 cut(s)	44, 59, 148
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	3 cut(s)	99, 168, 276
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.