Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Reverse (-)

15785137 .. 15788662

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGCAGGTCCCTGGTCTTCTCTACTAACTTTGCTCTGAGATTTTCTCAAAAACCCAGATCAATTTTACCCCCTAGTTTACCAAGCCACTCTATTTCCCTGAACTCAAGGCAGCTATTGCAACATGGGTCTCAAAGATTTGGACTTTCATTTTCCAAACCAACAAGAACTCTCTGCACCAAAGCTGTGCTATCTGAATTTCCAAATCAGAAGCAGTATGTGAAAGTGGGTGCCCAATCAGTTGGGCCCATCCCAGCTAGTCAGCTCATCGAAGTGGTTGAGAAGGCTGCTAAGACTGGTGCTGAGGTTGTCATGGATGCTGTTAATCAGCCTCGGAATATTACCTATAAGGGACTTACTGACCTGGTTACTGACACAGATAAAAAGAGTGAAGCAGCAATTTTAGAAGTTGTGAAAAAGAACTTTGAAGATCACCTTATTCTTGGAGAGGAGGGTGGAATTATTGGAGATACATCTTCTGACTATCTGTGGTGCATTGATCCATTAGATGGAACGACAAACTTTGCACATGGTTACCCTAGCTTTGCAGTTTCTGTGGGAGTTCTATTTCGAGGAAAACCTGCTGCTGCAGCTGTGGTAGAGTTTGTCGGAGGCTCAATGTGTTGGAATACTCGCATCTTTTCTGCTAGTGCTGGTGGGGGAGCATTTTGTAATGGCCAAAAGATTCACGTGAGTCAAACGGATAAGGTGGAACGATCTCTTCTTGTTACTGGGTTTGGTTATGAACATGATGATCCATGGGCCACGAACATGGAACTATTCAAAGAGTTCACTGACGTCAGCAGGGGTGTCAGAAGGCTCGGTGCTGCTGCAGTAGACATGTGCCATGTAGCTCTTGGGATCGTAGAAGCATACTGGGAATATCGATTAAAGCCATGGGATATGGCTGCTGGTGTTTTGATAGTTGAGGAAGCTGGAGGAGTGGTTACCTGCATGGATGGTGGAAAATTTTGTGTATTTGATAGATCTGTTTTGGTATCCAACGGAGTGCTGCATGCCAAGCTTTTGGAGAGGATTGCACCAGCAACTGAGAAGTTGAAGAGCAAAGAAATTAATTTCTCATTGTGGTATAAGCCTGAAAATTACAGGACAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

374

Amino Acids

40.79

Weight (kDa)

7.08

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	87 - 351	5.9e-78	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	801
Acc36I	ACCTGC	2 cut(s)	589, 959
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	837
AclWI	GGATC	3 cut(s)	494, 749, 869
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	197, 968
AcvI	CACGTG	1 cut(s)	691
AcyI	GRCGYC	1 cut(s)	798
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	3 cut(s)	428, 784, 1060
AjnI	CCWGG	2 cut(s)	12, 363
AluBI	AGCT	9 cut(s)	115, 185, 257, 265, 543, 593, 854, 935, 1024
AluI	AGCT	9 cut(s)	115, 185, 257, 265, 543, 593, 854, 935, 1024
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	494, 749, 869
AlwNI	CAGNNNCTG	2 cut(s)	554, 1049
AoxI	GGCC	3 cut(s)	245, 676, 762
ApaI	GGGCCC	1 cut(s)	249
ApoI	RAATTY	2 cut(s)	197, 968
AseI	ATTAAT	1 cut(s)	1074
AspS9I	GGNCC	4 cut(s)	9, 245, 246, 762
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	2 cut(s)	235, 249
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	691
BbsI	GAAGAC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	303
BccI	CCATC	3 cut(s)	257, 503, 953
BciT130I	CCWGG	2 cut(s)	14, 365
BciVI	GTATCC	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	4 cut(s)	75, 258, 540, 648
BfmI	CTRYAG	2 cut(s)	588, 831
BfuAI	ACCTGC	2 cut(s)	589, 959
BfuI	GTATCC	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	986
Bme1390I	CCNGG	2 cut(s)	14, 365
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	4 cut(s)	9, 245, 246, 762
BmiI	GGNNCC	3 cut(s)	11, 232, 247
BmrFI	CCNGG	2 cut(s)	14, 365
BmrI	ACTGGG	2 cut(s)	741, 886
BmsI	GCATC	2 cut(s)	307, 645
BmuI	ACTGGG	2 cut(s)	741, 886
BpiI	GAAGAC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	957
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	886
BsaAI	YACGTR	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	4 cut(s)	12, 332, 758, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	301, 736, 881
BseBI	CCWGG	2 cut(s)	14, 365
BseCI	ATCGAT	1 cut(s)	886
BseDI	CCNNGG	4 cut(s)	12, 332, 758, 896
BseGI	GGATG	3 cut(s)	249, 322, 964
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	3 cut(s)	29, 294, 1041
BseNI	ACTGG	3 cut(s)	301, 736, 881
BseRI	GAGGAG	2 cut(s)	464, 954
BseSI	GKGCMC	2 cut(s)	235, 249
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	247, 678, 764
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	886
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	247, 678, 764
Bso31I	GGTCTC	1 cut(s)	135
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	235, 249
Bsp143I	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
Bsp19I	CCATGG	2 cut(s)	758, 896
BspANI	GGCC	3 cut(s)	247, 678, 764
BspCNI	CTCAG	3 cut(s)	30, 295, 1042
BspDI	ATCGAT	1 cut(s)	886
BspLI	GGNNCC	3 cut(s)	11, 232, 247
BspMAI	CTGCAG	2 cut(s)	592, 835
BspMI	ACCTGC	2 cut(s)	589, 959
BspPI	GGATC	3 cut(s)	494, 749, 869
BspQI	GCTCTTC	1 cut(s)	1055
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	135
BsrI	ACTGG	3 cut(s)	301, 736, 881
BssECI	CCNNGG	4 cut(s)	12, 332, 758, 896
BssMI	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
BssNI	GRCGYC	1 cut(s)	798
BssT1I	CCWWGG	2 cut(s)	758, 896
Bst2UI	CCWGG	2 cut(s)	14, 365
Bst6I	CTCTTC	2 cut(s)	726, 1055
BstACI	GRCGYC	1 cut(s)	798
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	691
BstC8I	GCNNGC	1 cut(s)	1017
BstDEI	CTNAG	4 cut(s)	38, 291, 303, 1050
BstDSI	CCRYGG	2 cut(s)	758, 896
BstEII	GGTNACC	2 cut(s)	533, 946
BstF5I	GGATG	3 cut(s)	249, 322, 964
BstKTI	GATC	7 cut(s)	62, 433, 502, 719, 757, 864, 989
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 590, 1021
BstNI	CCWGG	2 cut(s)	14, 365
BstNSI	RCATGY	2 cut(s)	844, 1019
BstPI	GGTNACC	2 cut(s)	533, 946
BstSCI	CCNGG	2 cut(s)	12, 363
BstSFI	CTRYAG	2 cut(s)	588, 831
BstSLI	GKGCMC	2 cut(s)	235, 249
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	986
BstXI	CCANNNNNNTGG	3 cut(s)	242, 772, 1027
BstYI	RGATCY	1 cut(s)	986
Bsu15I	ATCGAT	1 cut(s)	886
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	3 cut(s)	247, 678, 764
BsuTUI	ATCGAT	1 cut(s)	886
BtgI	CCRYGG	2 cut(s)	758, 896
BtsCI	GGATG	3 cut(s)	249, 322, 964
BtsIMutI	CAGTG	1 cut(s)	792
BveI	ACCTGC	2 cut(s)	589, 959
Cac8I	GCNNGC	1 cut(s)	1017
CaiI	CAGNNNCTG	2 cut(s)	554, 1049
Cfr13I	GGNCC	4 cut(s)	9, 245, 246, 762
ClaI	ATCGAT	1 cut(s)	886
CsiI	ACCWGGT	1 cut(s)	363
DdeI	CTNAG	4 cut(s)	38, 291, 303, 1050
DpnI	GATC	7 cut(s)	61, 432, 501, 718, 756, 863, 988
DpnII	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	726, 1055
EarI	CTCTTC	2 cut(s)	726, 1055
Eco130I	CCWWGG	2 cut(s)	758, 896
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	9
Eco72I	CACGTG	1 cut(s)	691
Eco91I	GGTNACC	2 cut(s)	533, 946
EcoO109I	RGGNCCY	1 cut(s)	9
EcoO65I	GGTNACC	2 cut(s)	533, 946
EcoRII	CCWGG	2 cut(s)	12, 363
EcoT14I	CCWWGG	2 cut(s)	758, 896
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	758, 896
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	837
FokI	GGATG	3 cut(s)	236, 329, 971
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	4 cut(s)	75, 258, 540, 648
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	3 cut(s)	247, 678, 764
Hin1I	GRCGYC	1 cut(s)	798
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	2 cut(s)	685, 694
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	80, 792, 838
Hpy188I	TCNGA	7 cut(s)	39, 196, 210, 336, 481, 611, 815
Hpy8I	GTNNAC	3 cut(s)	80, 792, 838
HpyAV	CCTTC	2 cut(s)	277, 810
HpyCH4IV	ACGT	2 cut(s)	690, 798
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 590, 1021
HpyF3I	CTNAG	4 cut(s)	38, 291, 303, 1050
HpySE526I	ACGT	2 cut(s)	690, 798
Hsp92I	GRCGYC	1 cut(s)	798
Kzo9I	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	1 cut(s)	662
LweI	GCATC	2 cut(s)	307, 645
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	4 cut(s)	75, 258, 540, 648
MaeII	ACGT	2 cut(s)	690, 798
MaeIII	GTNAC	4 cut(s)	367, 533, 727, 946
MalI	GATC	7 cut(s)	61, 432, 501, 718, 756, 863, 988
MboI	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
MboII	GAAGA	5 cut(s)	10, 440, 468, 713, 1072
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	2 cut(s)	235, 249
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	8 cut(s)	63, 197, 399, 459, 968, 1071, 1075, 1102
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	3 cut(s)	589, 605, 1026
MnlI	CCTC	9 cut(s)	298, 342, 442, 445, 566, 605, 922, 932, 1026
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	3 cut(s)	324, 890, 1074
MslI	CAYNNNNRTG	2 cut(s)	272, 770
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	593
MspR9I	CCNGG	2 cut(s)	14, 365
MvaI	CCWGG	2 cut(s)	14, 365
MwoI	GCNNNNNNNGC	3 cut(s)	118, 590, 1021
NcoI	CCATGG	2 cut(s)	758, 896
NdeII	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
NlaIV	GGNNCC	3 cut(s)	11, 232, 247
NspI	RCATGY	2 cut(s)	844, 1019
PaeI	GCATGC	1 cut(s)	1019
PciI	ACATGT	1 cut(s)	840
PciSI	GCTCTTC	1 cut(s)	1055
PfeI	GAWTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	509
PleI	GAGTC	1 cut(s)	702
PmaCI	CACGTG	1 cut(s)	691
PmlI	CACGTG	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	702
Ppu21I	YACGTR	1 cut(s)	691
PpuMI	RGGWCCY	1 cut(s)	9
PscI	ACATGT	1 cut(s)	840
PshBI	ATTAAT	1 cut(s)	1074
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	12, 363
PspCI	CACGTG	1 cut(s)	691
PspEI	GGTNACC	2 cut(s)	533, 946
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	12, 363
PspN4I	GGNNCC	3 cut(s)	11, 232, 247
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	4 cut(s)	9, 245, 246, 762
PspPPI	RGGWCCY	1 cut(s)	9
PstI	CTGCAG	2 cut(s)	592, 835
PstNI	CAGNNNCTG	2 cut(s)	554, 1049
PsuI	RGATCY	1 cut(s)	986
PvuII	CAGCTG	1 cut(s)	593
RseI	CAYNNNNRTG	2 cut(s)	272, 770
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	3 cut(s)	324, 890, 1074
Sau3AI	GATC	7 cut(s)	59, 430, 499, 716, 754, 861, 986
Sau96I	GGNCC	4 cut(s)	9, 245, 246, 762
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	14, 365
SduI	GDGCHC	2 cut(s)	235, 249
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	307, 645
SfcI	CTRYAG	2 cut(s)	588, 831
SinI	GGWCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	272, 770
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	8 cut(s)	63, 197, 399, 459, 968, 1071, 1075, 1102
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	4 cut(s)	75, 258, 540, 648
StyD4I	CCNGG	2 cut(s)	12, 363
StyI	CCWWGG	2 cut(s)	758, 896
TaiI	ACGT	2 cut(s)	693, 801
TaqI	TCGA	3 cut(s)	270, 571, 886
TasI	AATT	8 cut(s)	63, 197, 399, 459, 968, 1071, 1075, 1102
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	3 cut(s)	324, 890, 1074
Tru9I	TTAA	3 cut(s)	324, 890, 1074
TscAI	CASTG	1 cut(s)	799
TspDTI	ATGAA	2 cut(s)	138, 759
TspGWI	ACGGA	2 cut(s)	716, 1020
TspRI	CASTG	1 cut(s)	799
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	9
VspI	ATTAAT	1 cut(s)	1074
XapI	RAATTY	2 cut(s)	197, 968
XceI	RCATGY	2 cut(s)	844, 1019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	4 cut(s)	75, 258, 540, 648
ZraI	GACGTC	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.