Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

21879635 .. 21884612

Gene Structure 4978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG130200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTGTGTGAATATTGAAGATAAAGGTGTCAGAAGGCTCGGTGCTGCTGCAGTAGACATGTGCCATGTAGCTCTTGGGATCGTAGAAGCATACTGGGAATACCGACTAAAGCCATGGGATATGGCTGCTGGTGTTTTGATAGTTGAGGAAGCTGAAGGAGTGGTTACCTGCATGGATGGTGGAAAGTTTTGTGTATTTGATAGATCTGTTTTGGCATCCAATGGAGTGCTGCATACCAAGCTTTTGGAGAGGATTGCACCAGCAACTGAGAATTTGAAGAGCAAAGAAATTAATTTCTCATTGTGGTATAAGCCTGAAGATTACAAGACAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

5.15

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	7 - 91	7.9e-25	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	174, 336
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	17, 277
AluBI	AGCT	3 cut(s)	71, 152, 241
AluI	AGCT	3 cut(s)	71, 152, 241
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	266
ApeKI	GCWGC	4 cut(s)	44, 47, 125, 229
ApoI	RAATTY	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	31, 34, 112, 216
BccI	CCATC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	4 cut(s)	45, 48, 126, 230
BlsI	GCNGC	4 cut(s)	46, 49, 127, 231
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	181, 215
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	31, 34, 112, 216
Bsp143I	GATC	2 cut(s)	78, 203
Bsp19I	CCATGG	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	78, 203
BssT1I	CCWWGG	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	113
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	181, 215
BstKTI	GATC	2 cut(s)	81, 206
BstMBI	GATC	2 cut(s)	78, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	61
BstPI	GGTNACC	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	31, 34, 112, 216
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	181, 215
BveI	ACCTGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	266
CviAII	CATG	4 cut(s)	58, 65, 114, 172
CviJI	RGCY	7 cut(s)	37, 71, 112, 125, 152, 241, 313
CviKI_1	RGCY	7 cut(s)	37, 71, 112, 125, 152, 241, 313
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	80, 205
DpnII	GATC	2 cut(s)	78, 203
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	174, 336
Eco91I	GGTNACC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	4 cut(s)	61, 68, 117, 175
FaiI	YATR	8 cut(s)	59, 66, 91, 115, 122, 173, 234, 309
FatI	CATG	4 cut(s)	57, 64, 113, 171
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	45, 48, 126, 230
FokI	GGATG	2 cut(s)	188, 202
Fsp4HI	GCNGC	4 cut(s)	45, 48, 126, 230
GluI	GCNGC	4 cut(s)	45, 48, 126, 230
Hin1II	CATG	4 cut(s)	61, 68, 117, 175
HindIII	AAGCTT	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	27, 149
HpyCH4V	TGCA	4 cut(s)	50, 171, 232, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	61, 68, 117, 175
Kzo9I	GATC	2 cut(s)	78, 203
LguI	GCTCTTC	1 cut(s)	272
LpnPI	CCDG	5 cut(s)	79, 114, 181, 273, 327
Lsp1109I	GCAGC	4 cut(s)	31, 34, 112, 216
LweI	GCATC	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	80, 205
MboI	GATC	2 cut(s)	78, 203
MboII	GAAGA	3 cut(s)	29, 289, 329
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	3 cut(s)	271, 288, 292
MnlI	CCTC	2 cut(s)	139, 243
MseI	TTAA	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	78, 203
NlaIII	CATG	4 cut(s)	61, 68, 117, 175
NspI	RCATGY	1 cut(s)	61
PciI	ACATGT	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	46, 49, 127, 231
PscI	ACATGT	1 cut(s)	57
PshBI	ATTAAT	1 cut(s)	291
PspEI	GGTNACC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	4 cut(s)	45, 48, 126, 230
Sau3AI	GATC	2 cut(s)	78, 203
SetI	ASST	5 cut(s)	28, 73, 154, 170, 243
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	48
Sse9I	AATT	3 cut(s)	271, 288, 292
SspI	AATATT	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	113
TasI	AATT	3 cut(s)	271, 288, 292
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseI	GCWGC	4 cut(s)	44, 47, 125, 229
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.