Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Reverse (-)

14335076 .. 14336390

Gene Structure 1315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCGATATTTCCTTGTTCCCTTCTATTTGAAAAGCAATTATGTTCAGGTAGAGTTTGTCGGAGGCCCAGTGTGTTGGAATACTCGCATCTTTTCTGCGAGTGCTGGCTCACCCTCTTCCATATTTCAGGTGGAACGATCTCTTCTTGATTCTGGGTTTGATTATGAGCATGATGATCCAGGGGCCACGAACATAGAACCATTCAAGGAGTTCACTGACGTCAGCAGGGGTGTCAGAATGCTCGGTGCTGCTGCAGTAGACATGTGCCATGTAGCTCTTGGGATCGTGGAAGCATACTGGGAATATCGACTCAAGCCATGGGAATGGCTTCTGATAGTTGAGGAAGCTGGAGGAGTGGTTACCTGCATGGATGGTGCAAAGTTTTGTGTATTTGATAGATCTGTTTTGGTATCCAATGGAGTGCTGCATGCCAAGGTTAACCTATCTGCTGCAGTTATATCCATAATCCAAGAGAAAAAGATTGTGGAAATGCAAGTCTGTCATAGAGTTCTCGAGCTTGTGCTTTTGGAGAGGATTGCTCCAGCAACTGAGAATTTGAAGAGCAAACAAATCAATTTATCATTGTGGTATAAGCCTGAAAACTGCAGGACAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

206

Amino Acids

23.23

Weight (kDa)

5.44

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	43 - 146	7.6e-17	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	258
AclWI	GGATC	2 cut(s)	170, 290
AcsI	RAATTY	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	219
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	31, 205, 559
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	3 cut(s)	275, 347, 517
AluI	AGCT	3 cut(s)	275, 347, 517
AlwI	GGATC	2 cut(s)	170, 290
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	64, 183
ApeKI	GCWGC	4 cut(s)	248, 251, 424, 449
ApoI	RAATTY	1 cut(s)	553
Asp700I	GAANNNNTTC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	65, 183
AsuHPI	GGTGA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	512
BbvI	GCAGC	4 cut(s)	235, 238, 411, 436
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	421
BfmI	CTRYAG	3 cut(s)	252, 450, 604
BfuAI	ACCTGC	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	421
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	4 cut(s)	249, 252, 425, 450
BlsI	GCNGC	4 cut(s)	250, 253, 426, 451
Bme1390I	CCNGG	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	65, 183
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	2 cut(s)	62, 307
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	2 cut(s)	62, 307
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	2 cut(s)	369, 525
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	179, 317, 432
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 342, 372
Bse1I	ACTGG	2 cut(s)	68, 302
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	179, 317, 432
BseGI	GGATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	68, 302
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	4 cut(s)	235, 238, 411, 436
BshFI	GGCC	2 cut(s)	66, 185
BsiHKCI	CYCGRG	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	66, 185
BsoBI	CYCGRG	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	137, 175, 282, 398
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	2 cut(s)	66, 185
BspCNI	CTCAG	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	3 cut(s)	256, 454, 608
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	170, 290
BspQI	GCTCTTC	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	68, 302
BssECI	CCNNGG	3 cut(s)	179, 317, 432
BssMI	GATC	4 cut(s)	137, 175, 282, 398
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	2 cut(s)	317, 432
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	3 cut(s)	121, 147, 554
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	106, 429
BstDEI	CTNAG	1 cut(s)	549
BstDSI	CCRYGG	1 cut(s)	317
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	4 cut(s)	140, 178, 285, 401
BstMBI	GATC	4 cut(s)	137, 175, 282, 398
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	2 cut(s)	265, 431
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	3 cut(s)	252, 450, 604
BstV1I	GCAGC	4 cut(s)	235, 238, 411, 436
BstX2I	RGATCY	1 cut(s)	398
BstXI	CCANNNNNNTGG	2 cut(s)	75, 324
BstYI	RGATCY	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	66, 185
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	75, 213
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	106, 429
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	65, 183
CviAII	CATG	6 cut(s)	170, 262, 269, 318, 367, 428
CviJI	RGCY	9 cut(s)	66, 108, 185, 275, 316, 328, 347, 517, 595
CviKI_1	RGCY	9 cut(s)	66, 108, 185, 275, 316, 328, 347, 517, 595
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	4 cut(s)	139, 177, 284, 400
DpnII	GATC	4 cut(s)	137, 175, 282, 398
Eam1104I	CTCTTC	3 cut(s)	121, 147, 554
EarI	CTCTTC	3 cut(s)	121, 147, 554
Eco130I	CCWWGG	2 cut(s)	317, 432
Eco88I	CYCGRG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	317, 432
ErhI	CCWWGG	2 cut(s)	317, 432
FaeI	CATG	6 cut(s)	173, 265, 272, 321, 370, 431
FatI	CATG	6 cut(s)	169, 261, 268, 317, 366, 427
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	249, 252, 425, 450
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	249, 252, 425, 450
GluI	GCNGC	4 cut(s)	249, 252, 425, 450
GsuI	CTGGAG	2 cut(s)	369, 525
HaeIII	GGCC	2 cut(s)	66, 185
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	6 cut(s)	173, 265, 272, 321, 370, 431
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	149, 309
HpaI	GTTAAC	1 cut(s)	439
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	213, 259, 439
Hpy188I	TCNGA	3 cut(s)	62, 236, 333
Hpy188III	TCNNGA	2 cut(s)	146, 512
Hpy8I	GTNNAC	3 cut(s)	213, 259, 439
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	254, 366, 377, 427, 452, 493, 606
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	173, 265, 272, 321, 370, 431
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	137, 175, 282, 398
LguI	GCTCTTC	1 cut(s)	554
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	4 cut(s)	235, 238, 411, 436
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	4 cut(s)	139, 177, 284, 400
MboI	GATC	4 cut(s)	137, 175, 282, 398
MboII	GAAGA	3 cut(s)	108, 134, 571
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	3 cut(s)	37, 553, 574
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	40, 56
MnlI	CCTC	5 cut(s)	56, 124, 334, 344, 525
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	4 cut(s)	137, 175, 282, 398
NlaIII	CATG	6 cut(s)	173, 265, 272, 321, 370, 431
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	2 cut(s)	265, 431
PaeI	GCATGC	1 cut(s)	431
PaeR7I	CTCGAG	1 cut(s)	512
PciI	ACATGT	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	554
PctI	GAATGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	250, 253, 426, 451
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PscI	ACATGT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	178
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	65, 183
PstI	CTGCAG	3 cut(s)	256, 454, 608
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	4 cut(s)	249, 252, 425, 450
Sau3AI	GATC	4 cut(s)	137, 175, 282, 398
Sau96I	GGNCC	2 cut(s)	65, 183
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	9 cut(s)	51, 132, 222, 277, 349, 365, 438, 444, 519
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	3 cut(s)	252, 450, 604
Sfr274I	CTCGAG	1 cut(s)	512
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	322
SmlI	CTYRAG	2 cut(s)	311, 512
SmoI	CTYRAG	2 cut(s)	311, 512
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	3 cut(s)	37, 553, 574
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	2 cut(s)	317, 432
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	307, 513
TasI	AATT	3 cut(s)	37, 553, 574
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	75, 220
TseI	GCWGC	4 cut(s)	248, 251, 424, 449
TspRI	CASTG	2 cut(s)	75, 220
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	2 cut(s)	265, 431
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 275
XhoI	CTCGAG	1 cut(s)	512
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	327
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.