Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

4917678 .. 4919924

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTTCGTTCGACGCTTTCAGCATCGACGGCGACGATCTGAACGCCGCATCCAACCGTCCATTTGACCAGGACGAGGTCGTCGTCGAGAGCTACGACTACGCCTCCTACTCTGACTTCTCCGGCGGGCATCCCACCGAAGGAGTGTCGGCGGATCAGGCGGCGGCATCGCCGTTCGGATTCGAAGATCCGAGCCCGAACTACTCCGGCTCGTCGCCGTTCGGGGCTGCTCCGGCTGAGAACGGGAATGGATATGGAATCGGCGAGAACGGAATCGACGACGGAGTTTTTGCATCCGACGGTCCTGTGCTGCCGGAGCCGAGCGAGATGCAGGAGGAAGGGTTTGCTCTTCGTGAGTGGAGGAGTCAAAATGCCATTCTGCTTGAGGGGAAGGAAAAGAGAGAGAAAGAACTGAGGATCCAGATTATTGAAGAAGCTGAGGAGTTCAAACGCGCATTCTATGAGAAAAGGAAGCTTAATGTTGAGACTAACAAGGTTCAGAACAGGGAAAAGGAGAAGTTGTTCTTGGCTGATCAAGAGAACTTCCACAAGAACGCAGACAAGCAAAGTTGGAAAGCAATAGCCGAGCTCATTCCTCACGAAATTCCCAACATCGAGAAAAAGAGAGGCAAGAAGGATCAGGACAAGAAGCCATCAATCACGGTCATTCAGGGACCAAAGCCTGGAAAACCCACTGATCTTTCAAGGATGCGACAAATACTTTTGAAGCTGAAGCATACAACTCCACCTCACATGATTCCTAAACCACCTGCTCCTGCTAAAGATGCAAAAGATGGAAAGGATGCAAAAGATGCCAAGAATGTTAAGGATGCAAAAGATGTGAAGACTGCAGCATCAGCATCTAAAACTAATGGGTCTGCAGAAGCTGCGGTGCCTGCTGCTTCAGAAGCCAAAGATGCCACCTCTAATGGCACTTCAGATGCACCGGAACAAGCAGTTCCTGTTTCTACCGAGGAACAATCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

329

Amino Acids

35.71

Weight (kDa)

5.01

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	108 - 247	1.1e-08	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	778
AasI	GACNNNNNNGTC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	892
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	1 cut(s)	453
AciI	CCGC	6 cut(s)	48, 126, 152, 161, 164, 890
AclWI	GGATC	5 cut(s)	162, 182, 412, 425, 645
AcsI	RAATTY	1 cut(s)	603
AcuI	CTGAAG	3 cut(s)	752, 888, 921
AfiI	CCNNNNNNNGG	3 cut(s)	76, 140, 683
AgsI	TTSAA	4 cut(s)	431, 448, 705, 727
AjnI	CCWGG	2 cut(s)	69, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AloI	GAACNNNNNNTCC	6 cut(s)	35, 67, 402, 434, 506, 538
AluBI	AGCT	6 cut(s)	93, 437, 475, 589, 730, 887
AluI	AGCT	6 cut(s)	93, 437, 475, 589, 730, 887
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	5 cut(s)	162, 182, 412, 425, 645
AlwNI	CAGNNNCTG	2 cut(s)	887, 962
ApeKI	GCWGC	5 cut(s)	227, 310, 851, 887, 899
ApoI	RAATTY	1 cut(s)	603
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	302, 674
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	302, 674
BamHI	GGATCC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	892
BanII	GRGCYC	2 cut(s)	197, 591
BbsI	GAAGAC	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	5 cut(s)	214, 297, 863, 874, 886
BccI	CCATC	2 cut(s)	661, 788
BceAI	ACGGC	3 cut(s)	46, 157, 202
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	2 cut(s)	71, 684
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	849, 879
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	8 cut(s)	48, 162, 165, 228, 311, 852, 888, 900
BlsI	GCNGC	8 cut(s)	49, 163, 166, 229, 312, 853, 889, 901
Bme1390I	CCNGG	2 cut(s)	71, 684
Bme18I	GGWCC	2 cut(s)	302, 674
BmgT120I	GGNCC	2 cut(s)	302, 674
BmiI	GGNNCC	4 cut(s)	318, 419, 675, 894
BmrFI	CCNGG	2 cut(s)	71, 684
BpiI	GAAGAC	1 cut(s)	851
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	972
BsaWI	WCCGGW	1 cut(s)	946
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 326, 356, 506, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 140, 683
BseBI	CCWGG	2 cut(s)	71, 684
BseDI	CCNNGG	1 cut(s)	972
BseGI	GGATG	6 cut(s)	50, 130, 293, 714, 808, 835
BseLI	CCNNNNNNNGG	3 cut(s)	76, 140, 683
BseMII	CTCAG	3 cut(s)	228, 404, 429
BseRI	GAGGAG	2 cut(s)	376, 455
BseXI	GCAGC	5 cut(s)	214, 297, 863, 874, 886
Bsh1236I	CGCG	1 cut(s)	453
BshNI	GGYRCC	1 cut(s)	892
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	5 cut(s)	123, 207, 233, 314, 947
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	3 cut(s)	76, 140, 683
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	197, 591
Bsp143I	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
BspACI	CCGC	6 cut(s)	48, 126, 152, 161, 164, 890
BspCNI	CTCAG	3 cut(s)	229, 405, 430
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	4 cut(s)	318, 419, 675, 894
BspMAI	CTGCAG	2 cut(s)	853, 883
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	5 cut(s)	162, 182, 412, 425, 645
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	892
BssECI	CCNNGG	1 cut(s)	972
BssMI	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
Bst2UI	CCWGG	2 cut(s)	71, 684
Bst4CI	ACNGT	3 cut(s)	59, 302, 664
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	2 cut(s)	812, 887
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	128, 897
BstDEI	CTNAG	3 cut(s)	237, 413, 438
BstF5I	GGATG	6 cut(s)	50, 130, 293, 714, 808, 835
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	7 cut(s)	40, 157, 190, 420, 535, 640, 700
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
BstNI	CCWGG	2 cut(s)	71, 684
BstSCI	CCNGG	2 cut(s)	69, 682
BstSFI	CTRYAG	2 cut(s)	849, 879
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	5 cut(s)	214, 297, 863, 874, 886
BstV2I	GAAGAC	1 cut(s)	851
BstX2I	RGATCY	2 cut(s)	187, 417
BstYI	RGATCY	2 cut(s)	187, 417
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	6 cut(s)	50, 130, 293, 714, 808, 835
BtsIMutI	CAGTG	1 cut(s)	693
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	2 cut(s)	128, 897
CaiI	CAGNNNCTG	2 cut(s)	887, 962
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	302, 674
CseI	GACGC	1 cut(s)	23
CviAII	CATG	1 cut(s)	754
DdeI	CTNAG	3 cut(s)	237, 413, 438
DpnI	GATC	7 cut(s)	39, 156, 189, 419, 534, 639, 699
DpnII	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	2 cut(s)	197, 591
Eco47I	GGWCC	2 cut(s)	302, 674
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	3 cut(s)	752, 888, 921
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	69, 682
EcoT38I	GRGCYC	2 cut(s)	197, 591
FaeI	CATG	1 cut(s)	757
FaiI	YATR	4 cut(s)	255, 462, 738, 755
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	1 cut(s)	753
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	8 cut(s)	48, 162, 165, 228, 311, 852, 888, 900
FokI	GGATG	6 cut(s)	37, 117, 280, 721, 815, 842
FriOI	GRGCYC	2 cut(s)	197, 591
Fsp4HI	GCNGC	8 cut(s)	48, 162, 165, 228, 311, 852, 888, 900
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	8 cut(s)	48, 162, 165, 228, 311, 852, 888, 900
HapII	CCGG	5 cut(s)	123, 207, 233, 314, 947
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	1 cut(s)	757
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	5 cut(s)	180, 258, 273, 364, 757
HpaII	CCGG	5 cut(s)	123, 207, 233, 314, 947
Hpy188I	TCNGA	8 cut(s)	42, 115, 179, 192, 298, 501, 907, 940
Hpy188III	TCNNGA	7 cut(s)	88, 353, 421, 536, 599, 616, 641
Hpy99I	CGWCG	9 cut(s)	17, 32, 38, 86, 89, 217, 281, 284, 302
HpyAV	CCTTC	4 cut(s)	134, 332, 385, 628
HpyCH4III	ACNGT	3 cut(s)	59, 302, 664
HpyCH4V	TGCA	8 cut(s)	293, 331, 788, 806, 833, 851, 881, 944
HpyF3I	CTNAG	3 cut(s)	237, 413, 438
Hsp92II	CATG	1 cut(s)	757
HspAI	GCGC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	3 cut(s)	235, 316, 778
Lsp1109I	GCAGC	5 cut(s)	214, 297, 863, 874, 886
MalI	GATC	7 cut(s)	39, 156, 189, 419, 534, 639, 699
MboI	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
MboII	GAAGA	4 cut(s)	197, 341, 443, 856
MflI	RGATCY	2 cut(s)	187, 417
MhlI	GDGCHC	2 cut(s)	197, 591
MluCI	AATT	1 cut(s)	603
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	3 cut(s)	78, 321, 551
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	3 cut(s)	477, 825, 988
MspI	CCGG	5 cut(s)	123, 207, 233, 314, 947
MspR9I	CCNGG	2 cut(s)	71, 684
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	71, 684
MvnI	CGCG	1 cut(s)	453
NdeII	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
NlaIII	CATG	1 cut(s)	757
NlaIV	GGNNCC	4 cut(s)	318, 419, 675, 894
NmeAIII	GCCGAG	2 cut(s)	345, 610
NspV	TTCGAA	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 81, 93, 276
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	4 cut(s)	180, 258, 273, 757
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	8 cut(s)	49, 163, 166, 229, 312, 853, 889, 901
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	69, 682
PspGI	CCWGG	2 cut(s)	69, 682
PspN4I	GGNNCC	4 cut(s)	318, 419, 675, 894
PspPI	GGNCC	2 cut(s)	302, 674
PstI	CTGCAG	2 cut(s)	853, 883
PstNI	CAGNNNCTG	2 cut(s)	887, 962
PsuI	RGATCY	2 cut(s)	187, 417
PsyI	GACNNNGTC	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	477, 825, 988
SatI	GCNGC	8 cut(s)	48, 162, 165, 228, 311, 852, 888, 900
Sau3AI	GATC	7 cut(s)	37, 154, 187, 417, 532, 637, 697
Sau96I	GGNCC	2 cut(s)	302, 674
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	71, 684
SduI	GDGCHC	2 cut(s)	197, 591
SfcI	CTRYAG	2 cut(s)	849, 879
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	2 cut(s)	302, 674
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	603
SsiI	CCGC	6 cut(s)	48, 126, 152, 161, 164, 890
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	69, 682
TaaI	ACNGT	3 cut(s)	59, 302, 664
TaqI	TCGA	6 cut(s)	12, 27, 87, 183, 276, 615
TasI	AATT	1 cut(s)	603
TauI	GCSGC	3 cut(s)	50, 164, 167
TfiI	GAWTC	4 cut(s)	180, 258, 273, 757
Tru1I	TTAA	3 cut(s)	477, 825, 988
Tru9I	TTAA	3 cut(s)	477, 825, 988
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	5 cut(s)	227, 310, 851, 887, 899
TspGWI	ACGGA	2 cut(s)	285, 297
TspRI	CASTG	1 cut(s)	700
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	302, 674
XapI	RAATTY	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.