Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

38444753 .. 38446759

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1253300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAATTGGTGTTTCGGAACATTATTTACTATGAAACAACAAATTTCGCACATGGTTATCCTAGCTTTGCAGTTTCTGTTGGAGTTTTATTTCAAGGAAAACCTGTTGCTGCTGCCGTGTACTCCCCTTCAGTAGACATGTGCCATGTAGCTCTCGGGATTGTAGAAGCTTACTGGGAATATCGACTAAAGCCGTGGGATATGGCAGCTGGTGTTTTGATAGTTGAAGAGGCTGGAGGAAAGGTTACGTGCATGGATGGTGGAAAATTTTCTGTAGTTGATAGATCTGTCTTGGTATCCAATGGTCTTTTAGAGAGGATTGCACCTGCAACAGAGAAGTTGAAGAGCAAAGAAATCGATTTCTCTTTGTGGTACAAGCCCGAAGATTACACAACAGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

135

Amino Acids

14.89

Weight (kDa)

5.34

Isoelectric Point (pI)

24.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	13 - 45	8.7e-08	Inositol monophosphatase family
Inositol_P	PF00459	45 - 114	1.1e-20	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	2 cut(s)	43, 266
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	122, 374
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	95, 227, 343
AluBI	AGCT	4 cut(s)	66, 152, 170, 209
AluI	AGCT	4 cut(s)	66, 152, 170, 209
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	110, 113, 206
ApoI	RAATTY	2 cut(s)	43, 266
Asp700I	GAANNNNTTC	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	97, 100, 218
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	2 cut(s)	101, 178
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciVI	GTATCC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	3 cut(s)	111, 114, 207
BlsI	GCNGC	3 cut(s)	112, 115, 208
BmeT110I	CYCGRG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	97, 100, 218
BshVI	ATCGAT	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	284
BspDI	ATCGAT	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	222, 338
BstBAI	YACGTR	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	97, 100, 218
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	307
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	334
CaiI	CAGNNNCTG	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	121, 373
CviAII	CATG	4 cut(s)	53, 139, 146, 253
CviJI	RGCY	7 cut(s)	66, 152, 170, 193, 209, 233, 379
CviKI_1	RGCY	7 cut(s)	66, 152, 170, 193, 209, 233, 379
CviQI	GTAC	2 cut(s)	121, 373
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	222, 338
EarI	CTCTTC	2 cut(s)	222, 338
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	155
FaeI	CATG	4 cut(s)	56, 142, 149, 256
FaiI	YATR	6 cut(s)	33, 54, 140, 147, 203, 254
FatI	CATG	4 cut(s)	52, 138, 145, 252
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	111, 114, 207
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	111, 114, 207
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	3 cut(s)	111, 114, 207
GsuI	CTGGAG	1 cut(s)	255
Hin1II	CATG	4 cut(s)	56, 142, 149, 256
HindIII	AAGCTT	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	121, 136
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	121, 136
HpyAV	CCTTC	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	71, 252, 323, 329
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	56, 142, 149, 256
Kzo9I	GATC	1 cut(s)	284
LguI	GCTCTTC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	117, 160, 195, 219, 339
Lsp1109I	GCAGC	3 cut(s)	97, 100, 218
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	3 cut(s)	239, 355, 395
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	3 cut(s)	5, 43, 266
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	3 cut(s)	223, 230, 309
MroXI	GAANNNNTTC	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	209
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	56, 142, 149, 256
NspI	RCATGY	1 cut(s)	142
PaqCI	CACCTGC	1 cut(s)	334
PciI	ACATGT	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	112, 115, 208
Ppu21I	YACGTR	1 cut(s)	249
PscI	ACATGT	1 cut(s)	138
PsrI	GAACNNNNNNTAC	2 cut(s)	11, 43
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	122, 374
RsaNI	GTAC	2 cut(s)	121, 373
SapI	GCTCTTC	1 cut(s)	338
SatI	GCNGC	3 cut(s)	111, 114, 207
Sau3AI	GATC	1 cut(s)	284
SetI	ASST	8 cut(s)	68, 106, 154, 172, 211, 246, 251, 328
SfcI	CTRYAG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	5, 43, 266
SspMI	CTAG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	2 cut(s)	184, 357
TasI	AATT	3 cut(s)	5, 43, 266
TatI	WGTACW	1 cut(s)	120
TseI	GCWGC	3 cut(s)	110, 113, 206
TspDTI	ATGAA	2 cut(s)	17, 48
XapI	RAATTY	2 cut(s)	43, 266
XceI	RCATGY	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.