Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023185.1

Orthogroup ID

OG0002951

Physical Location & Seq

Genomic Coordinates Forward (+)

9555 .. 10758

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023185.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgagaattagtatcgatcttcaaagtgtcgggagctcaccctcttccatatttcaggtggaacgatctcttcttgttactgggtttggttatgaacatgatgatccatgggccacgaacatagaactattcaaagagttcactgacgtcagcaggggtgtcagaaggctcggtgctgctgcagtagacatgtgccatgtagctcttgggatcgtagaagcatactgggaatatcgactaaagccatgggatatggctgctggtgttttgatagttgaggaagctggaggagtggttacctgcatggatggtggaaaattttgtgtatttgatagatctgttttggtatccaacggagtgctgcatgccaagcttttggagaggattgcaccagcaactgagaagttgaagagcaaagaaattaatttctcattgtggtataagcctgaaaattacaggacagaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

156

Amino Acids

17.46

Weight (kDa)

5.4

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31190
fragaria_vesca	FvH4_3g12170 FvH4_3g12170 FvH4_3g12170 FvH4_3g12170
malus_domestica	MD05G1253100.v1.1 MD05G1253300.v1.1 MD05G1355100.v1.1 MD05G1355200.v1.1 MD10G1234100.v1.1 MD10G1234300.v1.1
prunus_persica	Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1 Prupe.4G110600_v2.0.a1
pyrus_communis	pycom05g23120 pycom05g23130 pycom05g23170 pycom05g23190 pycom10g19630
rosa_chinensis	RchiOBHm_Chr5g0019951 RchiOBHm_Chr5g0019961
rosa_laevigata	RLG00000032489
rosa_multiflora	Rmu_sc0023185.1_g000003 Rmu_sc0040606.1_g000001 Rmu_sc0040607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058230
rosa_rugosa	Rorug05G0055700 Rorug05G0055800
rosa_samantha	Rh1BG130200 Rh5AG145700 Rh5BG145200 Rh5CG156800 Rh5DG144400 Rh5DG144600
rosa_wichuraiana	Rw5G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	186
AclWI	GGATC	2 cut(s)	98, 218
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	3 cut(s)	23, 133, 409
AluBI	AGCT	4 cut(s)	36, 203, 284, 373
AluI	AGCT	4 cut(s)	36, 203, 284, 373
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	98, 218
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	4 cut(s)	176, 179, 257, 361
ApoI	RAATTY	1 cut(s)	317
AseI	ATTAAT	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	163, 166, 244, 348
BccI	CCATC	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	4 cut(s)	177, 180, 258, 362
BlsI	GCNGC	4 cut(s)	178, 181, 259, 363
BmgT120I	GGNCC	1 cut(s)	111
BmrI	ACTGGG	2 cut(s)	90, 235
BmuI	ACTGGG	2 cut(s)	90, 235
BpmI	CTGGAG	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	107, 245
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bse1I	ACTGG	2 cut(s)	85, 230
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	107, 245
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	85, 230
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	4 cut(s)	163, 166, 244, 348
BshFI	GGCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	5 cut(s)	16, 65, 103, 210, 335
Bsp19I	CCATGG	2 cut(s)	107, 245
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	2 cut(s)	98, 218
BspQI	GCTCTTC	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	85, 230
BssECI	CCNNGG	2 cut(s)	107, 245
BssMI	GATC	5 cut(s)	16, 65, 103, 210, 335
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	2 cut(s)	107, 245
Bst6I	CTCTTC	3 cut(s)	49, 75, 404
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	2 cut(s)	107, 245
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	5 cut(s)	19, 68, 106, 213, 338
BstMBI	GATC	5 cut(s)	16, 65, 103, 210, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNSI	RCATGY	2 cut(s)	193, 368
BstPI	GGTNACC	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	163, 166, 244, 348
BstX2I	RGATCY	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	113
BsuTUI	ATCGAT	1 cut(s)	15
BtgI	CCRYGG	2 cut(s)	107, 245
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	15
CviAII	CATG	7 cut(s)	98, 108, 190, 197, 246, 304, 365
CviJI	RGCY	9 cut(s)	36, 113, 169, 203, 244, 257, 284, 373, 445
CviKI_1	RGCY	9 cut(s)	36, 113, 169, 203, 244, 257, 284, 373, 445
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	5 cut(s)	18, 67, 105, 212, 337
DpnII	GATC	5 cut(s)	16, 65, 103, 210, 335
Eam1104I	CTCTTC	3 cut(s)	49, 75, 404
EarI	CTCTTC	3 cut(s)	49, 75, 404
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	107, 245
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco91I	GGTNACC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	36
EcoO65I	GGTNACC	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	107, 245
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	2 cut(s)	107, 245
FaeI	CATG	7 cut(s)	101, 111, 193, 200, 249, 307, 368
FatI	CATG	7 cut(s)	97, 107, 189, 196, 245, 303, 364
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	177, 180, 258, 362
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	177, 180, 258, 362
GluI	GCNGC	4 cut(s)	177, 180, 258, 362
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	7 cut(s)	101, 111, 193, 200, 249, 307, 368
HindIII	AAGCTT	1 cut(s)	371
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	2 cut(s)	141, 187
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	2 cut(s)	141, 187
HpyAV	CCTTC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	182, 303, 364, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	7 cut(s)	101, 111, 193, 200, 249, 307, 368
Kzo9I	GATC	5 cut(s)	16, 65, 103, 210, 335
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	4 cut(s)	163, 166, 244, 348
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	76, 295
MalI	GATC	5 cut(s)	18, 67, 105, 212, 337
MboI	GATC	5 cut(s)	16, 65, 103, 210, 335
MboII	GAAGA	4 cut(s)	11, 36, 62, 421
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	5 cut(s)	6, 317, 420, 424, 451
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	4 cut(s)	52, 271, 281, 375
MseI	TTAA	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	370
NcoI	CCATGG	2 cut(s)	107, 245
NdeII	GATC	5 cut(s)	16, 65, 103, 210, 335
NlaIII	CATG	7 cut(s)	101, 111, 193, 200, 249, 307, 368
NspI	RCATGY	2 cut(s)	193, 368
PaeI	GCATGC	1 cut(s)	368
PciI	ACATGT	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	404
PkrI	GCNGC	4 cut(s)	178, 181, 259, 363
PscI	ACATGT	1 cut(s)	189
PshBI	ATTAAT	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	4 cut(s)	177, 180, 258, 362
Sau3AI	GATC	5 cut(s)	16, 65, 103, 210, 335
Sau96I	GGNCC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	38, 60, 150, 205, 286, 302, 375
SfcI	CTRYAG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	5 cut(s)	6, 317, 420, 424, 451
SstI	GAGCTC	1 cut(s)	38
StyI	CCWWGG	2 cut(s)	107, 245
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	15, 235
TasI	AATT	5 cut(s)	6, 317, 420, 424, 451
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	4 cut(s)	176, 179, 257, 361
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	2 cut(s)	193, 368
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 203
XmiI	GTMKAC	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.