Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Forward (+)

10045584 .. 10046682

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15942.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCACCGAAGAACCCACCGGAGAAACCACCTAAGAACGGCGCACCAGTCACTGAAGAGAAACTTCGTCAACTTCGTGATGCAGCTAAGAAGCTGGCGGCCCTCATTGAAGCAACATTGCTAAAGTGTTTGTCAAAGAAGTTAGAGAGACTCAAAAATAAGTACAAGTTCGAAGGATTTCTTGAGAGGGAAATGGGGGTAACAGTTGTCCTGCTTGATATTCATAAGGAGCTAAAGATCTTTGTCCGGCTGGAAAATGTGTTGAGGGTTCTAGACTTTACTATTGCTACTGAAAGTGCAATTGAAAGTTTGAAACAGAAAAAAGAGGAATTGGCAAAGTTGGAGCGGCGCAAGTTGAGATCTTGGATGTCGTTGGTGTGCCAAGGAAAAGTCAGGAAGATTCGGACTGGGCTAGAAAAGAAGACATGGAGGTTTCTGCTCAAATCTTGGAGAAGTGGAAGGAAGGCCTCGATGATTGCATTGGAGAAAGCTGTGAATTTGGGGTGTTCAGTCTCTGTGCTTCTAAAACACTTGTTGGTCTCATTACCGGAGAGCAAAGAACGTGAAATGGTGATTAAGCAGCTAAAAGTTGTACTGAAAAACCTTGCGAAGATGAAAGAAACATTTCAGCTAAGATCATGGAGTTGGGAATTTTCAATTTCAAAAGTCAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

226

Amino Acids

26.05

Weight (kDa)

10.22

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	346
AciI	CCGC	2 cut(s)	98, 346
AcsI	RAATTY	2 cut(s)	496, 650
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	164, 594
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	5 cut(s)	110, 305, 313, 657, 663
AluBI	AGCT	6 cut(s)	86, 94, 232, 491, 583, 631
AluI	AGCT	6 cut(s)	86, 94, 232, 491, 583, 631
Alw26I	GTCTC	3 cut(s)	142, 517, 544
AlwNI	CAGNNNCTG	2 cut(s)	53, 515
AoxI	GGCC	2 cut(s)	99, 465
ApeKI	GCWGC	2 cut(s)	83, 580
ApoI	RAATTY	2 cut(s)	496, 650
Asp700I	GAANNNNTTC	2 cut(s)	177, 624
AspLEI	GCGC	2 cut(s)	44, 351
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	583
AsuII	TTCGAA	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	95, 592
BceAI	ACGGC	1 cut(s)	55
BcoDI	GTCTC	3 cut(s)	142, 517, 544
BfaI	CTAG	2 cut(s)	272, 413
BglII	AGATCT	2 cut(s)	237, 359
BisI	GCNGC	4 cut(s)	84, 99, 347, 581
BlsI	GCNGC	4 cut(s)	85, 100, 348, 582
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	2 cut(s)	19, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	47, 412
Bse3DI	GCAATG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	47, 412
BseXI	GCAGC	2 cut(s)	95, 592
BshFI	GGCC	2 cut(s)	101, 467
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	3 cut(s)	20, 247, 548
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	3 cut(s)	142, 517, 544
BsnI	GGCC	2 cut(s)	101, 467
Bso31I	GGTCTC	1 cut(s)	544
Bsp119I	TTCGAA	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	237, 359, 635
BspACI	CCGC	2 cut(s)	98, 346
BspANI	GGCC	2 cut(s)	101, 467
BspLI	GGNNCC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	47, 412
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	237, 359, 635
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	33, 87, 632
BstF5I	GGATG	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	44, 351
BstKTI	GATC	3 cut(s)	240, 362, 638
BstMAI	GTCTC	3 cut(s)	142, 517, 544
BstMBI	GATC	3 cut(s)	237, 359, 635
BstV1I	GCAGC	2 cut(s)	95, 592
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	2 cut(s)	237, 359
BstYI	RGATCY	2 cut(s)	237, 359
BsuRI	GGCC	2 cut(s)	101, 467
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	2 cut(s)	53, 515
CfoI	GCGC	2 cut(s)	44, 351
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	163, 593
CviAII	CATG	3 cut(s)	426, 639, 675
CviQI	GTAC	2 cut(s)	163, 593
DdeI	CTNAG	3 cut(s)	33, 87, 632
DpnI	GATC	3 cut(s)	239, 361, 637
DpnII	GATC	3 cut(s)	237, 359, 635
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	429, 642, 678
FaiI	YATR	4 cut(s)	225, 427, 640, 676
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 165, 197
FatI	CATG	3 cut(s)	425, 638, 674
Fnu4HI	GCNGC	4 cut(s)	84, 99, 347, 581
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	4 cut(s)	84, 99, 347, 581
FspBI	CTAG	2 cut(s)	272, 413
GlaI	GCGC	2 cut(s)	43, 350
GluI	GCNGC	4 cut(s)	84, 99, 347, 581
HaeIII	GGCC	2 cut(s)	101, 467
HapII	CCGG	3 cut(s)	20, 247, 548
HhaI	GCGC	2 cut(s)	44, 351
Hin1II	CATG	3 cut(s)	429, 642, 678
Hin6I	GCGC	2 cut(s)	42, 349
HinP1I	GCGC	2 cut(s)	42, 349
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HinfI	GANTC	2 cut(s)	150, 400
HpaII	CCGG	3 cut(s)	20, 247, 548
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	405, 671
Hpy188III	TCNNGA	4 cut(s)	77, 182, 272, 394
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	167, 453, 457
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	3 cut(s)	83, 299, 479
HpyF3I	CTNAG	3 cut(s)	33, 87, 632
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	3 cut(s)	429, 642, 678
HspAI	GCGC	2 cut(s)	42, 349
Kzo9I	GATC	3 cut(s)	237, 359, 635
LmnI	GCTCC	2 cut(s)	229, 343
LpnPI	CCDG	9 cut(s)	33, 60, 80, 224, 236, 260, 379, 393, 561
Lsp1109I	GCAGC	2 cut(s)	95, 592
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	272, 413
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	2 cut(s)	49, 199
MalI	GATC	3 cut(s)	239, 361, 637
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	3 cut(s)	237, 359, 635
MboII	GAAGA	5 cut(s)	22, 68, 409, 433, 622
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	2 cut(s)	237, 359
MluCI	AATT	5 cut(s)	300, 329, 496, 650, 657
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	113, 180, 258, 319, 423, 478
MroXI	GAANNNNTTC	2 cut(s)	177, 624
MseI	TTAA	1 cut(s)	576
MspI	CCGG	3 cut(s)	20, 247, 548
MunI	CAATTG	1 cut(s)	300
NdeII	GATC	3 cut(s)	237, 359, 635
NlaIII	CATG	3 cut(s)	429, 642, 678
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PdmI	GAANNNNTTC	2 cut(s)	177, 624
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	85, 100, 348, 582
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	100
PstNI	CAGNNNCTG	2 cut(s)	53, 515
PsuI	RGATCY	2 cut(s)	237, 359
RsaI	GTAC	2 cut(s)	164, 594
RsaNI	GTAC	2 cut(s)	163, 593
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	4 cut(s)	84, 99, 347, 581
Sau3AI	GATC	3 cut(s)	237, 359, 635
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	5 cut(s)	300, 329, 496, 650, 657
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	2 cut(s)	98, 346
SspMI	CTAG	2 cut(s)	272, 413
StuI	AGGCCT	1 cut(s)	467
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	2 cut(s)	171, 470
TasI	AATT	5 cut(s)	300, 329, 496, 650, 657
TatI	WGTACW	2 cut(s)	162, 592
TauI	GCSGC	2 cut(s)	101, 349
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	83, 580
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	212, 629
TspRI	CASTG	1 cut(s)	58
XapI	RAATTY	2 cut(s)	496, 650
XbaI	TCTAGA	1 cut(s)	271
XmnI	GAANNNNTTC	2 cut(s)	177, 624
XspI	CTAG	2 cut(s)	272, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.