Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

30174164 .. 30175961

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG173000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATTAATTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGGAGGCCAATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGCTGAACATGGAGGGCTTCCACACATTTCGTGGGGGATTTTGGAATTACTTCAGTATGGGAATGGATGCTGAAGTATCATATGTCTATATTTTCGTATTCTCTACTGTCTTGGAACATATGCTTCTCTATGTCGCTCTTTTGGCCCTTGGTTTCTCTTCCTATCTGGGTAACAACCTTGGTGCCATAATCCATGTTCATGGCAGCTTCAACTTTTCTGCTCTTCTAGCGTTGAAATATTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

122

Amino Acids

13.76

Weight (kDa)

6.35

Isoelectric Point (pI)

12.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	12, 302
AclWI	GGATC	2 cut(s)	50, 63
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	2 cut(s)	157, 213
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	331, 355
AluBI	AGCT	3 cut(s)	76, 124, 327
AluI	AGCT	3 cut(s)	76, 124, 327
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	50, 63
AoxI	GGCC	3 cut(s)	46, 100, 264
ApeKI	GCWGC	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	12, 302
BbvI	GCAGC	1 cut(s)	336
BceAI	ACGGC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	14, 57, 304
BmsI	GCATC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	268, 298
BseGI	GGATG	2 cut(s)	33, 193
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	336
BshFI	GGCC	3 cut(s)	48, 102, 266
BshNI	GGYRCC	2 cut(s)	12, 302
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	48, 102, 266
Bsp143I	GATC	1 cut(s)	55
BspANI	GGCC	3 cut(s)	48, 102, 266
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	14, 57, 304
BspPI	GGATC	2 cut(s)	50, 63
BspQI	GCTCTTC	1 cut(s)	348
BspT107I	GGYRCC	2 cut(s)	12, 302
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	268, 298
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	268, 298
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	283, 348
BstC8I	GCNNGC	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	33, 193
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 263, 347
BstNSI	RCATGY	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	48, 102, 266
BtsCI	GGATG	2 cut(s)	33, 193
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	5 cut(s)	22, 92, 130, 314, 320
CviJI	RGCY	7 cut(s)	48, 76, 102, 124, 138, 266, 327
CviKI_1	RGCY	7 cut(s)	48, 76, 102, 124, 138, 266, 327
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	283, 348
EarI	CTCTTC	2 cut(s)	283, 348
Eco130I	CCWWGG	2 cut(s)	268, 298
Eco57I	CTGAAG	2 cut(s)	157, 213
EcoT14I	CCWWGG	2 cut(s)	268, 298
ErhI	CCWWGG	2 cut(s)	268, 298
FaeI	CATG	5 cut(s)	25, 95, 133, 317, 323
FatI	CATG	5 cut(s)	21, 91, 129, 313, 319
FauNDI	CATATG	2 cut(s)	202, 240
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	2 cut(s)	40, 200
Fsp4HI	GCNGC	1 cut(s)	325
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	325
HaeIII	GGCC	3 cut(s)	48, 102, 266
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	25, 95, 133, 317, 323
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	22, 71
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 263, 347
Hsp92II	CATG	5 cut(s)	25, 95, 133, 317, 323
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	55
LguI	GCTCTTC	1 cut(s)	348
LpnPI	CCDG	1 cut(s)	272
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	43, 270, 335
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	3 cut(s)	7, 50, 166
MnlI	CCTC	4 cut(s)	18, 38, 78, 127
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	26, 318
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	73, 263, 347
NdeI	CATATG	2 cut(s)	202, 240
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	5 cut(s)	25, 95, 133, 317, 323
NlaIV	GGNNCC	3 cut(s)	14, 57, 304
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	326
PshBI	ATTAAT	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	14, 57, 304
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	26, 318
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	265
SetI	ASST	5 cut(s)	18, 78, 126, 300, 329
SfaNI	GCATC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	26, 318
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	7, 50, 166
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	347
StyI	CCWWGG	2 cut(s)	268, 298
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	3 cut(s)	7, 50, 166
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	44, 308
VspI	ATTAAT	1 cut(s)	6
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.