Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

3181455 .. 3185847

Gene Structure 4393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG019100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAAGATTCCAAAAGGAGGCCAATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGCTGAACATGGAGGGCTTCCACACATTTCGTGGGGGATTTTGGAATTACTTCAGTATGGCCGCTCCGCTGGGTGGTCATAGGCGAGCAGCTGGAGAAGGTTTGCAGATCTTAGAAAGGTTTAAAGGCTTGGTATCATACGGAAGACCAATCCAGATTAAAAATCAAGGGACGAGTGATAAAATTCAAAGGGCTCAAATCAAATCCCATTTGTACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

9.89

Isoelectric Point (pI)

19.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AciI	CCGC	2 cut(s)	156, 161
AclWI	GGATC	2 cut(s)	23, 36
AcoI	YGGCCR	2 cut(s)	73, 153
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	17, 167
AgsI	TTSAA	1 cut(s)	281
AluBI	AGCT	3 cut(s)	49, 97, 185
AluI	AGCT	3 cut(s)	49, 97, 185
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	3 cut(s)	19, 73, 153
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	2 cut(s)	156, 183
BlsI	GCNGC	2 cut(s)	157, 184
BmiI	GGNNCC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 167
Bse3DI	GCAATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	17, 167
BseMI	GCAATG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	163
BshFI	GGCC	3 cut(s)	21, 75, 155
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	17, 167
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	21, 75, 155
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	28, 201
BspACI	CCGC	2 cut(s)	156, 161
BspANI	GGCC	3 cut(s)	21, 75, 155
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	23, 36
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	33
BssMI	GATC	2 cut(s)	28, 201
BstC8I	GCNNGC	2 cut(s)	66, 180
BstDEI	CTNAG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	31, 204
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	28, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	28, 201
BstYI	RGATCY	2 cut(s)	28, 201
BsuRI	GGCC	3 cut(s)	21, 75, 155
Cac8I	GCNNGC	2 cut(s)	66, 180
CfoI	GCGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	2 cut(s)	65, 103
CviJI	RGCY	9 cut(s)	21, 49, 75, 97, 111, 155, 185, 222, 287
CviKI_1	RGCY	9 cut(s)	21, 49, 75, 97, 111, 155, 185, 222, 287
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	2 cut(s)	30, 203
DpnII	GATC	2 cut(s)	28, 201
DraI	TTTAAA	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	73, 153
Eco24I	GRGCYC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	2 cut(s)	68, 106
FaiI	YATR	6 cut(s)	66, 104, 152, 174, 232, 313
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	2 cut(s)	64, 102
Fnu4HI	GCNGC	2 cut(s)	156, 183
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	156, 183
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	156, 183
GsaI	CCCAGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	21, 75, 155
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	68, 106
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	44, 247
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	64, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	68, 106
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	28, 201
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	149, 171, 260
Lsp1109I	GCAGC	1 cut(s)	194
MalI	GATC	2 cut(s)	30, 203
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	2 cut(s)	28, 201
MboII	GAAGA	2 cut(s)	16, 249
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	2 cut(s)	28, 201
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	23, 139, 276
MnlI	CCTC	3 cut(s)	11, 51, 100
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	216, 252
MspA1I	CMGCKG	2 cut(s)	163, 185
MunI	CAATTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	28, 201
NlaIII	CATG	2 cut(s)	68, 106
NlaIV	GGNNCC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	157, 184
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	28, 201
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	216, 252
SatI	GCNGC	2 cut(s)	156, 183
Sau3AI	GATC	2 cut(s)	28, 201
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	51, 99, 187, 196, 215, 312
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	3 cut(s)	23, 139, 276
SsiI	CCGC	2 cut(s)	156, 161
TasI	AATT	3 cut(s)	23, 139, 276
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	216, 252
Tru9I	TTAA	2 cut(s)	216, 252
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	249
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.