Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

21939921 .. 21941456

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGAGAATCAGCAGGAGAATCCACCGGAGAACCCACCGGCGAACAACCCAGAAGCAGTGGAGAATGCTCTTATTGAATGCATTGCAGCAGCCACCAAGTTGTCGTCACCAGAGAATCAGCAGGAGGAGAACCCACCGGAGAACGGCCCAGAAGTACTGGAGAATACTCTTGTTGAATGCATTGAAACAGCCAACAAGCTGTCGTCTCTTCTTGCAAGAGCATTGAGGAGCCACAGAGATTTGTTCAAAGAATCAAGAATGGAGATCCCAGTCCCACCGGAGAGGGAGCCAACATTTCTGGAGATTAACATGCCTAAATGCATTGAAGCAGCGAACAAGTTGTCGTCTCTTCTAACAAGAACATGGTTCTTGCAAGGAACTCCCATTTCTGGCTCTGCAGGTTTTGCTTCCTTTGTGAAAAATCGTCTACTCAATCCAGAAACATCAACCATTTTCAACACTATCTGCTCCGATTTCCCGAAGGTTCACCAGTTGATGAAAACCCATAAGAGAACCCGACGCACACTGAAGTTCCAAACTCTTCTTGAGAGAGACATGGGTGTTCACGACATCGTGCCTCGCATTCAGAAGGAGCTAACAAGCATGGCCATGGTTGAAGTTACATTGAAAGGTGGATTTCAAAGTGAAAGGGTAGAAAAACGTCTGAAGGAGTGTAAGGAGAACACCCAAGGCTTGGAGCTGGAAGTTGAAATTTTGGAGGCTATTCGTGCGCCAGAGAAGAATGATGAGCAAGATTTAGACTTTGTTGCTATCTGGGGTGGAAAAGAAGAGATAGAGGTTTCTGGTGAAGTCTTGGACGAGTGGAACCGATTCTTGAATGAAGGGCTTGATAAAATTAACAATGCTCAGGAACAAGCACAAGTAGTCTCGGTTGAGAATCCAAGGATCACAGAATCGAAGGGAAACGAAATGCGGGCTTATACTGGAGGAAAAGAAGCATGTCAAGGCAAAAAGGGGGAACCAAGTCCAGTAATTTTGTCCACATGGGTCAGGAAGAATCAAAGTAAACAGACTCAGGTCTGGGACTCTCTCCGGCTTTTATTGAATCAAGCTGTGACATTGGGGTGTCATGCCTCTGTGCTCCTCGAATACTTGTTGGTCTCACTGCCAGAGAGCCAAGAAAGAGAGATGAAGATTGGGCAGCTTAAGGCTGCACTGGGAAAGCTTGATAAAGATGGAAGAAACATTGCAGCTAAGAGAGTCTTGGAGTTGGACCTCTTCAGGTTCCCAAGTCAGAACATGACTGGTGCTGCTGCTGGTGTTCAAGCTGCTGCTGATGATAGAACAATTTACCAGTTGAAGAAGCTGTTTATTACAGTGAACTTGATGTTCCGTCATCCCATTTCTCTCCGGAAAGGAGGCAAGCTTATTGTGGTTTCTCTGAACAGCTATGTCAGTCAGTGCACTAAACTAGTGGATGCGCTGAAGCAGAAATTGCGGATGCCTGAGGAGCACTGGAATGTGGAGAAGGACAAGATGATGGAGTCATGGGAGCCCCTAAACGTCAGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

511

Amino Acids

57.64

Weight (kDa)

5.78

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	427
AccIII	TCCGGA	1 cut(s)	1371
AciI	CCGC	2 cut(s)	934, 1459
AclWI	GGATC	2 cut(s)	259, 914
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	4 cut(s)	548, 686, 1225, 1466
AfaI	GTAC	2 cut(s)	156, 1531
AfiI	CCNNNNNNNGG	3 cut(s)	143, 389, 694
AflII	CTTAAG	1 cut(s)	1166
AhlI	ACTAGT	1 cut(s)	1432
Alw21I	GWGCWC	3 cut(s)	1104, 1427, 1476
Alw26I	GTCTC	5 cut(s)	210, 351, 546, 892, 1126
Alw44I	GTGCAC	1 cut(s)	1423
AlwI	GGATC	2 cut(s)	259, 914
Aor13HI	TCCGGA	1 cut(s)	1371
AoxI	GGCC	2 cut(s)	145, 606
ApaLI	GTGCAC	1 cut(s)	1423
ApoI	RAATTY	1 cut(s)	711
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	1 cut(s)	830
AspLEI	GCGC	2 cut(s)	733, 1444
AspS9I	GGNCC	2 cut(s)	146, 1234
AsuHPI	GGTGA	3 cut(s)	99, 479, 818
AvaII	GGWCC	1 cut(s)	1234
AxyI	CCTNAGG	1 cut(s)	1467
BaeGI	GKGCMC	1 cut(s)	1427
BalI	TGGCCA	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	1518
Bbv12I	GWGCWC	3 cut(s)	1104, 1427, 1476
BccI	CCATC	2 cut(s)	1190, 1495
BceAI	ACGGC	1 cut(s)	160
BcoDI	GTCTC	5 cut(s)	210, 351, 546, 892, 1126
BcuI	ACTAGT	1 cut(s)	1432
BfaI	CTAG	1 cut(s)	1433
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	1166
BfuAI	ACCTGC	1 cut(s)	389
BmcAI	AGTACT	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	1234
BmgT120I	GGNCC	2 cut(s)	146, 1234
BmiI	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
BmrI	ACTGGG	2 cut(s)	263, 1187
BmsI	GCATC	2 cut(s)	1429, 1452
BmuI	ACTGGG	2 cut(s)	263, 1187
BoxI	GACNNNNGTC	1 cut(s)	1037
BpmI	CTGGAG	3 cut(s)	179, 320, 966
Bpu10I	CCTNAGC	1 cut(s)	867
BpuEI	CTTGAG	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	1126
BsaJI	CCNNGG	3 cut(s)	609, 688, 902
BsaWI	WCCGGW	4 cut(s)	25, 136, 277, 1371
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 389, 694
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	9 cut(s)	162, 269, 490, 949, 989, 1182, 1270, 1315, 1481
Bse21I	CCTNAGG	1 cut(s)	1467
Bse3DI	GCAATG	2 cut(s)	81, 1206
BseAI	TCCGGA	1 cut(s)	1371
BseDI	CCNNGG	3 cut(s)	609, 688, 902
BseGI	GGATG	3 cut(s)	1357, 1444, 1467
BseLI	CCNNNNNNNGG	3 cut(s)	143, 389, 694
BseMI	GCAATG	2 cut(s)	81, 1206
BseMII	CTCAG	3 cut(s)	881, 1049, 1458
BseNI	ACTGG	9 cut(s)	162, 269, 490, 949, 989, 1182, 1270, 1315, 1481
BseRI	GAGGAG	4 cut(s)	140, 241, 1094, 1484
BseSI	GKGCMC	1 cut(s)	1427
BsgI	GTGCAG	1 cut(s)	1158
BshFI	GGCC	2 cut(s)	147, 608
BsiHKAI	GWGCWC	3 cut(s)	1104, 1427, 1476
BsiSI	CCGG	6 cut(s)	26, 38, 137, 278, 1054, 1372
BslFI	GGGAC	2 cut(s)	257, 1058
BslI	CCNNNNNNNGG	3 cut(s)	143, 389, 694
BsmAI	GTCTC	5 cut(s)	210, 351, 546, 892, 1126
BsmBI	CGTCTC	2 cut(s)	210, 351
BsmFI	GGGAC	2 cut(s)	257, 1058
BsmI	GAATGC	4 cut(s)	70, 83, 182, 582
BsnI	GGCC	2 cut(s)	147, 608
Bso31I	GGTCTC	1 cut(s)	1126
Bsp1286I	GDGCHC	4 cut(s)	1104, 1427, 1476, 1518
Bsp13I	TCCGGA	1 cut(s)	1371
Bsp143I	GATC	2 cut(s)	264, 906
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	2 cut(s)	934, 1459
BspANI	GGCC	2 cut(s)	147, 608
BspCNI	CTCAG	3 cut(s)	880, 1048, 1459
BspEI	TCCGGA	1 cut(s)	1371
BspLI	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	259, 914
BspTI	CTTAAG	1 cut(s)	1166
BspTNI	GGTCTC	1 cut(s)	1126
BsrDI	GCAATG	2 cut(s)	81, 1206
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	9 cut(s)	162, 269, 490, 949, 989, 1182, 1270, 1315, 1481
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	609, 688, 902
BssMI	GATC	2 cut(s)	264, 906
BssT1I	CCWWGG	3 cut(s)	609, 688, 902
Bst4CI	ACNGT	1 cut(s)	1339
Bst6I	CTCTTC	5 cut(s)	213, 354, 546, 783, 1244
BstAFI	CTTAAG	1 cut(s)	1166
BstAPI	GCANNNNNTGC	2 cut(s)	404, 1456
BstC8I	GCNNGC	2 cut(s)	936, 1385
BstDEI	CTNAG	4 cut(s)	867, 1035, 1215, 1467
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	3 cut(s)	1357, 1444, 1467
BstHHI	GCGC	2 cut(s)	733, 1444
BstKTI	GATC	2 cut(s)	267, 909
BstMAI	GTCTC	5 cut(s)	210, 351, 546, 892, 1126
BstMBI	GATC	2 cut(s)	264, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	404, 728, 1456, 1471
BstNSI	RCATGY	2 cut(s)	313, 963
BstPAI	GACNNNNGTC	1 cut(s)	1037
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	1427
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	1467
BsuRI	GGCC	2 cut(s)	147, 608
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	1357, 1444, 1467
BtsI	GCAGTG	2 cut(s)	63, 1124
BtsIMutI	CAGTG	7 cut(s)	63, 524, 1124, 1175, 1344, 1427, 1474
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	936, 1385
CfoI	GCGC	2 cut(s)	733, 1444
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	146, 1234
CseI	GACGC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	155, 1530
CviQI	GTAC	2 cut(s)	155, 1530
DdeI	CTNAG	4 cut(s)	867, 1035, 1215, 1467
DpnI	GATC	2 cut(s)	266, 908
DpnII	GATC	2 cut(s)	264, 906
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	5 cut(s)	213, 354, 546, 783, 1244
EarI	CTCTTC	5 cut(s)	213, 354, 546, 783, 1244
Eco130I	CCWWGG	3 cut(s)	609, 688, 902
Eco24I	GRGCYC	1 cut(s)	1518
Eco31I	GGTCTC	1 cut(s)	1126
Eco47I	GGWCC	1 cut(s)	1234
Eco57I	CTGAAG	4 cut(s)	548, 686, 1225, 1466
Eco81I	CCTNAGG	1 cut(s)	1467
EcoT14I	CCWWGG	3 cut(s)	609, 688, 902
EcoT22I	ATGCAT	3 cut(s)	83, 182, 323
EcoT38I	GRGCYC	1 cut(s)	1518
ErhI	CCWWGG	3 cut(s)	609, 688, 902
Esp3I	CGTCTC	2 cut(s)	210, 351
FalI	AAGNNNNNCTT	2 cut(s)	1208, 1240
FaqI	GGGAC	2 cut(s)	257, 1058
FauI	CCCGC	1 cut(s)	927
FblI	GTMKAC	1 cut(s)	427
FokI	GGATG	3 cut(s)	1344, 1451, 1474
FriOI	GRGCYC	1 cut(s)	1518
FspBI	CTAG	1 cut(s)	1433
GlaI	GCGC	2 cut(s)	732, 1443
GsuI	CTGGAG	3 cut(s)	179, 320, 966
HaeIII	GGCC	2 cut(s)	147, 608
HapII	CCGG	6 cut(s)	26, 38, 137, 278, 1054, 1372
HgaI	GACGC	1 cut(s)	528
HhaI	GCGC	2 cut(s)	733, 1444
Hin6I	GCGC	2 cut(s)	731, 1442
HinP1I	GCGC	2 cut(s)	731, 1442
HindIII	AAGCTT	2 cut(s)	1184, 1385
HpaII	CCGG	6 cut(s)	26, 38, 137, 278, 1054, 1372
HphI	GGTGA	3 cut(s)	99, 479, 818
Hpy166II	GTNNAC	7 cut(s)	428, 487, 565, 1002, 1028, 1342, 1425
Hpy188I	TCNGA	5 cut(s)	472, 588, 666, 1257, 1404
Hpy8I	GTNNAC	7 cut(s)	428, 487, 565, 1002, 1028, 1342, 1425
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	6 cut(s)	475, 583, 661, 836, 913, 1483
HpyCH4III	ACNGT	1 cut(s)	1339
HpyCH4IV	ACGT	2 cut(s)	661, 1524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	404, 728, 1456, 1471
HpyF3I	CTNAG	4 cut(s)	867, 1035, 1215, 1467
HpySE526I	ACGT	2 cut(s)	661, 1524
HspAI	GCGC	2 cut(s)	731, 1442
Kpn2I	TCCGGA	1 cut(s)	1371
Kzo9I	GATC	2 cut(s)	264, 906
LmnI	GCTCC	8 cut(s)	228, 286, 473, 592, 697, 1107, 1471, 1513
LweI	GCATC	2 cut(s)	1429, 1452
MaeI	CTAG	1 cut(s)	1433
MaeII	ACGT	2 cut(s)	661, 1524
MaeIII	GTNAC	3 cut(s)	105, 619, 1075
MalI	GATC	2 cut(s)	266, 908
MboI	GATC	2 cut(s)	264, 906
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	4 cut(s)	1104, 1427, 1476, 1518
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	5 cut(s)	711, 855, 993, 1308, 1454
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	4 cut(s)	1027, 1040, 1230, 1514
MmeI	TCCRAC	1 cut(s)	1212
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	3 cut(s)	83, 182, 323
MroI	TCCGGA	1 cut(s)	1371
MroXI	GAANNNNTTC	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	3 cut(s)	306, 858, 1167
MslI	CAYNNNNRTG	3 cut(s)	608, 1084, 1479
Msp20I	TGGCCA	1 cut(s)	608
MspCI	CTTAAG	1 cut(s)	1166
MspI	CCGG	6 cut(s)	26, 38, 137, 278, 1054, 1372
Mva1269I	GAATGC	4 cut(s)	70, 83, 182, 582
MwoI	GCNNNNNNNGC	4 cut(s)	404, 728, 1456, 1471
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	2 cut(s)	264, 906
NlaIV	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
NmuCI	GTSAC	2 cut(s)	105, 1075
NsiI	ATGCAT	3 cut(s)	83, 182, 323
NspI	RCATGY	2 cut(s)	313, 963
PctI	GAATGC	4 cut(s)	70, 83, 182, 582
PdmI	GAANNNNTTC	1 cut(s)	830
PfeI	GAWTC	9 cut(s)	7, 19, 115, 251, 831, 898, 914, 1018, 1066
PflMI	CCANNNNNTGG	1 cut(s)	694
PleI	GAGTC	4 cut(s)	1027, 1040, 1229, 1513
PpsI	GAGTC	4 cut(s)	1027, 1040, 1229, 1513
PshAI	GACNNNNGTC	1 cut(s)	1037
PspN4I	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
PspPI	GGNCC	2 cut(s)	146, 1234
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	2 cut(s)	156, 1531
RsaNI	GTAC	2 cut(s)	155, 1530
RseI	CAYNNNNRTG	3 cut(s)	608, 1084, 1479
SaqAI	TTAA	3 cut(s)	306, 858, 1167
Sau3AI	GATC	2 cut(s)	264, 906
Sau96I	GGNCC	2 cut(s)	146, 1234
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	4 cut(s)	1027, 1040, 1230, 1514
SduI	GDGCHC	4 cut(s)	1104, 1427, 1476, 1518
SfaNI	GCATC	2 cut(s)	1429, 1452
SfcI	CTRYAG	1 cut(s)	396
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	1234
SmiMI	CAYNNNNRTG	3 cut(s)	608, 1084, 1479
SmlI	CTYRAG	2 cut(s)	545, 1166
SmoI	CTYRAG	2 cut(s)	545, 1166
SpeI	ACTAGT	1 cut(s)	1432
Sse9I	AATT	5 cut(s)	711, 855, 993, 1308, 1454
SsiI	CCGC	2 cut(s)	934, 1459
SspMI	CTAG	1 cut(s)	1433
StyI	CCWWGG	3 cut(s)	609, 688, 902
TaaI	ACNGT	1 cut(s)	1339
TaiI	ACGT	2 cut(s)	664, 1527
TaqI	TCGA	2 cut(s)	917, 1107
TasI	AATT	5 cut(s)	711, 855, 993, 1308, 1454
TatI	WGTACW	2 cut(s)	154, 1529
TfiI	GAWTC	9 cut(s)	7, 19, 115, 251, 831, 898, 914, 1018, 1066
Tru1I	TTAA	3 cut(s)	306, 858, 1167
Tru9I	TTAA	3 cut(s)	306, 858, 1167
TscAI	CASTG	7 cut(s)	63, 531, 1131, 1182, 1344, 1427, 1481
TseFI	GTSAC	2 cut(s)	105, 1075
Tsp45I	GTSAC	2 cut(s)	105, 1075
TspDTI	ATGAA	3 cut(s)	512, 855, 1166
TspGWI	ACGGA	1 cut(s)	1343
TspRI	CASTG	7 cut(s)	63, 531, 1131, 1182, 1344, 1427, 1481
Van91I	CCANNNNNTGG	1 cut(s)	694
Vha464I	CTTAAG	1 cut(s)	1166
VneI	GTGCAC	1 cut(s)	1423
VpaK11BI	GGWCC	1 cut(s)	1234
XapI	RAATTY	1 cut(s)	711
XceI	RCATGY	2 cut(s)	313, 963
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	830
XspI	CTAG	1 cut(s)	1433
ZrmI	AGTACT	1 cut(s)	156
Zsp2I	ATGCAT	3 cut(s)	83, 182, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.