Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Forward (+)

22456480 .. 22458491

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG123900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAGATTCCAAAAGGAGGCCAATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGCTGAACATGGAGGGCTTCCACACATTTCGTGGGGGATTTTGGAATTACTTCAGTATGGGAGGAAGGATTTGCTGGAACAAGGCGTCATGTGGGTGCCTCATGCTTATTGAGGAAGAACTTGAAAATCTCAGTCTACATCCAAGCTGTGCTCCAGCATCAGAGGAGGGGCAACCTAAGGACATATTCGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

96

Amino Acids

10.7

Weight (kDa)

4.93

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	229
AclWI	GGATC	2 cut(s)	23, 36
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	3 cut(s)	49, 97, 240
AluI	AGCT	3 cut(s)	49, 97, 240
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	2 cut(s)	19, 73
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	40
AxyI	CCTNAGG	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	30, 191
BmsI	GCATC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	21, 75
BshNI	GGYRCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	21, 75
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	21, 75
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	30, 191
BspPI	GGATC	2 cut(s)	23, 36
BspT107I	GGYRCC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	33
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	224, 270
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	21, 75
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	40
CseI	GACGC	1 cut(s)	168
CviAII	CATG	4 cut(s)	65, 103, 183, 196
CviJI	RGCY	6 cut(s)	21, 49, 75, 97, 111, 240
CviKI_1	RGCY	6 cut(s)	21, 49, 75, 97, 111, 240
DdeI	CTNAG	2 cut(s)	224, 270
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	68, 106, 186, 199
FaiI	YATR	6 cut(s)	66, 104, 152, 184, 197, 278
FatI	CATG	4 cut(s)	64, 102, 182, 195
FblI	GTMKAC	1 cut(s)	229
FokI	GGATG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	21, 75
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	68, 106, 186, 199
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	85, 256
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	224, 270
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	68, 106, 186, 199
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	2 cut(s)	154, 261
LweI	GCATC	1 cut(s)	260
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	16, 221
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	23, 139
MnlI	CCTC	8 cut(s)	11, 51, 100, 149, 199, 203, 250, 253
MroXI	GAANNNNTTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	68, 106, 186, 199
NlaIV	GGNNCC	2 cut(s)	30, 191
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	30, 191
PsuI	RGATCY	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	51, 99, 242, 271
SfaNI	GCATC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	2 cut(s)	23, 139
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	23, 139
TfiI	GAWTC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.