Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000172.1

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Forward (+)

63793 .. 65352

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000172.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

atggagaatcagcaggagaatccaccggagaacccaccggcgaacaacccagaagcagtggagaatgctcttattgaatgcattgcagcagccaccaagttgtcgtcaccagagaatcagcaggaggagaacccaccggagaacggcccagaagtgctggagaatactcttgttgaatgcattgaaacagccaacaagctgtcgtctcttcttgcaagagcattgaggagccacagagatttgttcaaagaatcaagaatggagatcccagtcccaccggagagggagccaacatttctggagattaacatgcctaaatgcattgaagcagcgaacaagttgtcgtctcttctaacaagaacatggttcttgcaaggaactcccatttctggctctgcaggttttgcttcctctgtgaaaaatcgtctactcaatccagaaacatcaaccattttcaacactatctgctccgatttcccgaaggtgcaccagttgatgaaaacccataagagaacccgacgcacactcaagttccaaactcttcttgagagagacatgggtgttcacgacctcgtgcctcgcattcagaaggagctaacaagcatggccatggttgaagttacattgaaaggtggatttcaaagtgaaagggtagaaaaacgtctgaaggagtgtaaggagaacacccaaggcttggagctggaagttgaaatcttggaggctattcgtgcgccagagaagaatgctgcgcaagatttagactttgttgctatctggggtggaaaagaagagatagaggtttctggtcaagtcttggacgagtggaaccgattcttgaatgaagggcttgataaaattaacaatgctcaggaacaagcacaagtagtctcggttgagaatccaaggatcacagaatcgaagggaaacgaaatgcgggcttatactggaggaaaagaagcatgtcaaggcaaaaagggggaaccaagtccagtaattttgtccaattgggtcaggaagaatcaaagtaaccggcctccggactggaactctctctggctttgcttgactgatgctgtgacattggggtgtcatgcctctgtgctcctcgaattcttgttggtctcactgccagagagccaagaaggagagatgaagattgggcagcttaaggctgcactgggaaagcttgataaagatggaagaaacattgcagctaagagagtcttggagttggacctcttcaggttcccaagtcagaacatgattggtgctgctgctggtgttcaagctgctgctgctgatgatacaacaatttaccagttgaagaagctgtttattacagtgaacttgatgttccgtcatcccatttctctcgggaaaggagacgagcctgtggtttctctgcaaagctatgccggacagtgcattaaactagtgaatgcgctgaagcagaaattgcggatgcctgaggagcactggaatgtggaggtggagagaatgaagaagtcatgggagcccctaaacgtcagtcttcccagtttgttcgaaacggtggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

519

Amino Acids

58.04

Weight (kDa)

5.53

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	427
AccIII	TCCGGA	1 cut(s)	1036
AciI	CCGC	2 cut(s)	934, 1459
AclWI	GGATC	2 cut(s)	259, 914
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	1 cut(s)	1109
AcuI	CTGAAG	3 cut(s)	686, 1225, 1466
AfiI	CCNNNNNNNGG	4 cut(s)	143, 389, 694, 1036
AflII	CTTAAG	1 cut(s)	1166
AhlI	ACTAGT	1 cut(s)	1432
AluBI	AGCT	9 cut(s)	199, 595, 700, 1165, 1186, 1214, 1289, 1330, 1410
AluI	AGCT	9 cut(s)	199, 595, 700, 1165, 1186, 1214, 1289, 1330, 1410
Alw21I	GWGCWC	3 cut(s)	489, 1104, 1476
Alw26I	GTCTC	6 cut(s)	210, 351, 546, 892, 1126, 1377
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	259, 914
Ama87I	CYCGRG	1 cut(s)	1373
Aor13HI	TCCGGA	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	145, 606, 1031
ApaLI	GTGCAC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	1109
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	1 cut(s)	830
AspLEI	GCGC	3 cut(s)	733, 751, 1444
AspS9I	GGNCC	2 cut(s)	146, 1234
AsuHPI	GGTGA	1 cut(s)	99
AsuII	TTCGAA	1 cut(s)	1545
AvaI	CYCGRG	1 cut(s)	1373
AvaII	GGWCC	1 cut(s)	1234
AxyI	CCTNAGG	1 cut(s)	1467
BaeGI	GKGCMC	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	1518
BauI	CACGAG	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	1523
Bbv12I	GWGCWC	3 cut(s)	489, 1104, 1476
BccI	CCATC	1 cut(s)	1190
BceAI	ACGGC	1 cut(s)	160
BcoDI	GTCTC	6 cut(s)	210, 351, 546, 892, 1126, 1377
BcuI	ACTAGT	1 cut(s)	1432
BfaI	CTAG	1 cut(s)	1433
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	1166
BfuAI	ACCTGC	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	1234
BmeT110I	CYCGRG	1 cut(s)	1373
BmgT120I	GGNCC	2 cut(s)	146, 1234
BmiI	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
BmrI	ACTGGG	3 cut(s)	263, 1187, 1530
BmsI	GCATC	2 cut(s)	1060, 1452
BmuI	ACTGGG	3 cut(s)	263, 1187, 1530
BpiI	GAAGAC	1 cut(s)	1523
BpmI	CTGGAG	3 cut(s)	179, 320, 966
Bpu10I	CCTNAGC	1 cut(s)	867
Bpu14I	TTCGAA	1 cut(s)	1545
BpuEI	CTTGAG	2 cut(s)	512, 566
BsaI	GGTCTC	1 cut(s)	1126
BsaJI	CCNNGG	3 cut(s)	609, 688, 902
BsaWI	WCCGGW	4 cut(s)	25, 136, 277, 1036
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 389, 694, 1036
Bse118I	RCCGGY	2 cut(s)	37, 1029
Bse1I	ACTGG	9 cut(s)	269, 490, 949, 989, 1046, 1182, 1318, 1481, 1536
Bse21I	CCTNAGG	1 cut(s)	1467
Bse3DI	GCAATG	2 cut(s)	81, 1206
BseAI	TCCGGA	1 cut(s)	1036
BseDI	CCNNGG	3 cut(s)	609, 688, 902
BseGI	GGATG	2 cut(s)	1360, 1467
BseLI	CCNNNNNNNGG	4 cut(s)	143, 389, 694, 1036
BseMI	GCAATG	2 cut(s)	81, 1206
BseMII	CTCAG	2 cut(s)	881, 1458
BseNI	ACTGG	9 cut(s)	269, 490, 949, 989, 1046, 1182, 1318, 1481, 1536
BseRI	GAGGAG	4 cut(s)	140, 241, 1094, 1484
BseSI	GKGCMC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	1158
BshFI	GGCC	3 cut(s)	147, 608, 1033
BsiHKAI	GWGCWC	3 cut(s)	489, 1104, 1476
BsiHKCI	CYCGRG	1 cut(s)	1373
BsiSI	CCGG	7 cut(s)	26, 38, 137, 278, 1030, 1037, 1416
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	4 cut(s)	143, 389, 694, 1036
BsmAI	GTCTC	6 cut(s)	210, 351, 546, 892, 1126, 1377
BsmBI	CGTCTC	3 cut(s)	210, 351, 1377
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	6 cut(s)	70, 83, 182, 582, 748, 1444
BsnI	GGCC	3 cut(s)	147, 608, 1033
Bso31I	GGTCTC	1 cut(s)	1126
BsoBI	CYCGRG	1 cut(s)	1373
Bsp119I	TTCGAA	1 cut(s)	1545
Bsp1286I	GDGCHC	4 cut(s)	489, 1104, 1476, 1518
Bsp13I	TCCGGA	1 cut(s)	1036
Bsp143I	GATC	2 cut(s)	264, 906
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	2 cut(s)	934, 1459
BspANI	GGCC	3 cut(s)	147, 608, 1033
BspCNI	CTCAG	2 cut(s)	880, 1459
BspEI	TCCGGA	1 cut(s)	1036
BspLI	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	259, 914
BspT104I	TTCGAA	1 cut(s)	1545
BspTI	CTTAAG	1 cut(s)	1166
BspTNI	GGTCTC	1 cut(s)	1126
BsrDI	GCAATG	2 cut(s)	81, 1206
BsrFI	RCCGGY	2 cut(s)	37, 1029
BsrI	ACTGG	9 cut(s)	269, 490, 949, 989, 1046, 1182, 1318, 1481, 1536
BssAI	RCCGGY	2 cut(s)	37, 1029
BssECI	CCNNGG	3 cut(s)	609, 688, 902
BssMI	GATC	2 cut(s)	264, 906
BssSI	CACGAG	1 cut(s)	572
BssT1I	CCWWGG	3 cut(s)	609, 688, 902
Bst2BI	CACGAG	1 cut(s)	572
Bst4CI	ACNGT	3 cut(s)	1342, 1422, 1552
Bst6I	CTCTTC	5 cut(s)	213, 354, 546, 783, 1244
BstAFI	CTTAAG	1 cut(s)	1166
BstAPI	GCANNNNNTGC	2 cut(s)	404, 1456
BstBI	TTCGAA	1 cut(s)	1545
BstC8I	GCNNGC	1 cut(s)	936
BstDEI	CTNAG	3 cut(s)	867, 1215, 1467
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	1360, 1467
BstHHI	GCGC	3 cut(s)	733, 751, 1444
BstKTI	GATC	2 cut(s)	267, 909
BstMAI	GTCTC	6 cut(s)	210, 351, 546, 892, 1126, 1377
BstMBI	GATC	2 cut(s)	264, 906
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 728, 1295, 1456, 1471
BstNSI	RCATGY	2 cut(s)	313, 963
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	1523
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	1467
BsuRI	GGCC	3 cut(s)	147, 608, 1033
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	1360, 1467
BtsI	GCAGTG	2 cut(s)	63, 1124
BtsIMutI	CAGTG	6 cut(s)	63, 1124, 1175, 1347, 1427, 1474
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	936
CfoI	GCGC	3 cut(s)	733, 751, 1444
Cfr10I	RCCGGY	2 cut(s)	37, 1029
Cfr13I	GGNCC	2 cut(s)	146, 1234
CseI	GACGC	1 cut(s)	528
CviAII	CATG	9 cut(s)	310, 363, 556, 604, 610, 960, 1091, 1261, 1509
DdeI	CTNAG	3 cut(s)	867, 1215, 1467
DpnI	GATC	2 cut(s)	266, 908
DpnII	GATC	2 cut(s)	264, 906
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	5 cut(s)	213, 354, 546, 783, 1244
EarI	CTCTTC	5 cut(s)	213, 354, 546, 783, 1244
Eco130I	CCWWGG	3 cut(s)	609, 688, 902
Eco24I	GRGCYC	1 cut(s)	1518
Eco31I	GGTCTC	1 cut(s)	1126
Eco47I	GGWCC	1 cut(s)	1234
Eco57I	CTGAAG	3 cut(s)	686, 1225, 1466
Eco81I	CCTNAGG	1 cut(s)	1467
Eco88I	CYCGRG	1 cut(s)	1373
EcoRI	GAATTC	1 cut(s)	1109
EcoT14I	CCWWGG	3 cut(s)	609, 688, 902
EcoT22I	ATGCAT	3 cut(s)	83, 182, 323
EcoT38I	GRGCYC	1 cut(s)	1518
ErhI	CCWWGG	3 cut(s)	609, 688, 902
Esp3I	CGTCTC	3 cut(s)	210, 351, 1377
FaeI	CATG	9 cut(s)	313, 366, 559, 607, 613, 963, 1094, 1264, 1512
FalI	AAGNNNNNCTT	2 cut(s)	1208, 1240
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	9 cut(s)	309, 362, 555, 603, 609, 959, 1090, 1260, 1508
FauI	CCCGC	1 cut(s)	927
FblI	GTMKAC	1 cut(s)	427
FokI	GGATG	2 cut(s)	1347, 1474
FriOI	GRGCYC	1 cut(s)	1518
FspBI	CTAG	1 cut(s)	1433
FspI	TGCGCA	1 cut(s)	750
GlaI	GCGC	3 cut(s)	732, 750, 1443
GsuI	CTGGAG	3 cut(s)	179, 320, 966
HaeIII	GGCC	3 cut(s)	147, 608, 1033
HapII	CCGG	7 cut(s)	26, 38, 137, 278, 1030, 1037, 1416
HgaI	GACGC	1 cut(s)	528
HhaI	GCGC	3 cut(s)	733, 751, 1444
Hin1II	CATG	9 cut(s)	313, 366, 559, 607, 613, 963, 1094, 1264, 1512
Hin6I	GCGC	3 cut(s)	731, 749, 1442
HinP1I	GCGC	3 cut(s)	731, 749, 1442
HindIII	AAGCTT	1 cut(s)	1184
HinfI	GANTC	9 cut(s)	7, 19, 115, 251, 831, 898, 914, 1018, 1221
HpaII	CCGG	7 cut(s)	26, 38, 137, 278, 1030, 1037, 1416
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	4 cut(s)	428, 487, 565, 1345
Hpy188I	TCNGA	4 cut(s)	472, 588, 666, 1257
Hpy8I	GTNNAC	4 cut(s)	428, 487, 565, 1345
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	6 cut(s)	475, 583, 661, 836, 913, 1136
HpyCH4III	ACNGT	3 cut(s)	1342, 1422, 1552
HpyCH4IV	ACGT	2 cut(s)	661, 1524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 728, 1295, 1456, 1471
HpyF3I	CTNAG	3 cut(s)	867, 1215, 1467
HpySE526I	ACGT	2 cut(s)	661, 1524
Hsp92II	CATG	9 cut(s)	313, 366, 559, 607, 613, 963, 1094, 1264, 1512
HspAI	GCGC	3 cut(s)	731, 749, 1442
Kpn2I	TCCGGA	1 cut(s)	1036
Kzo9I	GATC	2 cut(s)	264, 906
LmnI	GCTCC	8 cut(s)	228, 286, 473, 592, 697, 1107, 1471, 1513
LweI	GCATC	2 cut(s)	1060, 1452
MaeI	CTAG	1 cut(s)	1433
MaeII	ACGT	2 cut(s)	661, 1524
MaeIII	GTNAC	4 cut(s)	105, 619, 1025, 1075
MalI	GATC	2 cut(s)	266, 908
MboI	GATC	2 cut(s)	264, 906
MfeI	CAATTG	1 cut(s)	1003
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	4 cut(s)	489, 1104, 1476, 1518
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	6 cut(s)	855, 993, 1003, 1109, 1311, 1454
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	1230
MmeI	TCCRAC	1 cut(s)	1212
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	3 cut(s)	83, 182, 323
MroI	TCCGGA	1 cut(s)	1036
MroXI	GAANNNNTTC	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	4 cut(s)	306, 858, 1167, 1428
MslI	CAYNNNNRTG	3 cut(s)	608, 1084, 1479
Msp20I	TGGCCA	1 cut(s)	608
MspCI	CTTAAG	1 cut(s)	1166
MspI	CCGG	7 cut(s)	26, 38, 137, 278, 1030, 1037, 1416
MunI	CAATTG	1 cut(s)	1003
Mva1269I	GAATGC	6 cut(s)	70, 83, 182, 582, 748, 1444
MwoI	GCNNNNNNNGC	5 cut(s)	404, 728, 1295, 1456, 1471
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	2 cut(s)	264, 906
NlaIII	CATG	9 cut(s)	313, 366, 559, 607, 613, 963, 1094, 1264, 1512
NlaIV	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
NmuCI	GTSAC	2 cut(s)	105, 1075
NsbI	TGCGCA	1 cut(s)	750
NsiI	ATGCAT	3 cut(s)	83, 182, 323
NspI	RCATGY	2 cut(s)	313, 963
NspV	TTCGAA	1 cut(s)	1545
PctI	GAATGC	6 cut(s)	70, 83, 182, 582, 748, 1444
PdmI	GAANNNNTTC	1 cut(s)	830
PfeI	GAWTC	8 cut(s)	7, 19, 115, 251, 831, 898, 914, 1018
PflMI	CCANNNNNTGG	1 cut(s)	694
PleI	GAGTC	1 cut(s)	1229
PpsI	GAGTC	1 cut(s)	1229
PspN4I	GGNNCC	6 cut(s)	230, 288, 827, 981, 1247, 1515
PspPI	GGNCC	2 cut(s)	146, 1234
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	264
RseI	CAYNNNNRTG	3 cut(s)	608, 1084, 1479
SaqAI	TTAA	4 cut(s)	306, 858, 1167, 1428
Sau3AI	GATC	2 cut(s)	264, 906
Sau96I	GGNCC	2 cut(s)	146, 1234
SchI	GAGTC	1 cut(s)	1230
SduI	GDGCHC	4 cut(s)	489, 1104, 1476, 1518
SfaNI	GCATC	2 cut(s)	1060, 1452
SfcI	CTRYAG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	1545
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	1234
SmiMI	CAYNNNNRTG	3 cut(s)	608, 1084, 1479
SmlI	CTYRAG	3 cut(s)	527, 545, 1166
SmoI	CTYRAG	3 cut(s)	527, 545, 1166
SpeI	ACTAGT	1 cut(s)	1432
Sse9I	AATT	6 cut(s)	855, 993, 1003, 1109, 1311, 1454
SsiI	CCGC	2 cut(s)	934, 1459
SspMI	CTAG	1 cut(s)	1433
StyI	CCWWGG	3 cut(s)	609, 688, 902
TaaI	ACNGT	3 cut(s)	1342, 1422, 1552
TaiI	ACGT	2 cut(s)	664, 1527
TaqI	TCGA	3 cut(s)	917, 1107, 1545
TasI	AATT	6 cut(s)	855, 993, 1003, 1109, 1311, 1454
TfiI	GAWTC	8 cut(s)	7, 19, 115, 251, 831, 898, 914, 1018
Tru1I	TTAA	4 cut(s)	306, 858, 1167, 1428
Tru9I	TTAA	4 cut(s)	306, 858, 1167, 1428
TscAI	CASTG	6 cut(s)	63, 1131, 1182, 1347, 1427, 1481
TseFI	GTSAC	2 cut(s)	105, 1075
Tsp45I	GTSAC	2 cut(s)	105, 1075
TspDTI	ATGAA	4 cut(s)	512, 855, 1166, 1514
TspGWI	ACGGA	1 cut(s)	1346
TspRI	CASTG	6 cut(s)	63, 1131, 1182, 1347, 1427, 1481
Van91I	CCANNNNNTGG	1 cut(s)	694
Vha464I	CTTAAG	1 cut(s)	1166
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	1234
XapI	RAATTY	1 cut(s)	1109
XceI	RCATGY	2 cut(s)	313, 963
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	830
XspI	CTAG	1 cut(s)	1433
Zsp2I	ATGCAT	3 cut(s)	83, 182, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.