Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

48632660 .. 48635142

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATTAATTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGGAGGCCAATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGCTGAACATGGAGGGCTTCCACACATTTCGTGGGGGATTTTGGAATTACTTCAGTATGGGAACGTATGCTTCTCTATGTCGCTCTTTTGGCCCTTGGTTTCTCTTCCTATCTGGGAGGAAGGATTTGCTGGAACAAGGCGTCATGTGGGTGCCTCATGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

95

Amino Acids

11.0

Weight (kDa)

7.98

Isoelectric Point (pI)

21.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	12, 271
AclWI	GGATC	2 cut(s)	50, 63
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	76, 124
AluI	AGCT	2 cut(s)	76, 124
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	50, 63
AoxI	GGCC	3 cut(s)	46, 100, 211
AseI	ATTAAT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	12, 271
BceAI	ACGGC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	3 cut(s)	14, 57, 273
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	48, 102, 213
BshNI	GGYRCC	2 cut(s)	12, 271
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	48, 102, 213
Bsp143I	GATC	1 cut(s)	55
BspANI	GGCC	3 cut(s)	48, 102, 213
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	14, 57, 273
BspPI	GGATC	2 cut(s)	50, 63
BspT107I	GGYRCC	2 cut(s)	12, 271
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 210
BstNSI	RCATGY	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	48, 102, 213
BtsCI	GGATG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	250
CviAII	CATG	5 cut(s)	22, 92, 130, 265, 278
CviJI	RGCY	6 cut(s)	48, 76, 102, 124, 138, 213
CviKI_1	RGCY	6 cut(s)	48, 76, 102, 124, 138, 213
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	5 cut(s)	25, 95, 133, 268, 281
FaiI	YATR	8 cut(s)	23, 93, 131, 179, 189, 199, 266, 279
FatI	CATG	5 cut(s)	21, 91, 129, 264, 277
FokI	GGATG	1 cut(s)	40
GlaI	GCGC	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	48, 102, 213
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	5 cut(s)	25, 95, 133, 268, 281
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	22, 71
HpyAV	CCTTC	2 cut(s)	26, 235
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 210
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	25, 95, 133, 268, 281
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	2 cut(s)	219, 236
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	43, 217
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	3 cut(s)	7, 50, 166
MnlI	CCTC	6 cut(s)	18, 38, 78, 127, 231, 285
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	26, 269
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	73, 210
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	5 cut(s)	25, 95, 133, 268, 281
NlaIV	GGNNCC	3 cut(s)	14, 57, 273
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	34
PshBI	ATTAAT	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	14, 57, 273
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	26, 269
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	212
SetI	ASST	4 cut(s)	18, 78, 126, 188
SmiMI	CAYNNNNRTG	2 cut(s)	26, 269
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	7, 50, 166
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	188
TasI	AATT	3 cut(s)	7, 50, 166
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	6
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.