Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000395.1

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

135243 .. 137170

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000395.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgaagattccaaaaggaggccaattggatcccattgcgcctcttgagctaccccattctttgcatgcctttggccgtgtctctgacacaaatgagctgaacatggagggcttccacacatttcgtggggtattttggaattacttcagtatgggaacgtatgcttctctatgtcgctcttttggcccttggtttctcttcctatctgggaggaaggatttgctggaacaaggcgtcatgtgggtgcctcatgcttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

86

Amino Acids

9.85

Weight (kDa)

6.9

Isoelectric Point (pI)

21.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	23, 36
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	17
AluBI	AGCT	2 cut(s)	49, 97
AluI	AGCT	2 cut(s)	49, 97
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	3 cut(s)	19, 73, 184
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	30, 246
BpuEI	CTTGAG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	21, 75, 186
BshNI	GGYRCC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	21, 75, 186
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	21, 75, 186
BspLI	GGNNCC	2 cut(s)	30, 246
BspPI	GGATC	2 cut(s)	23, 36
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 183
BstNSI	RCATGY	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	21, 75, 186
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	223
CviAII	CATG	4 cut(s)	65, 103, 238, 251
CviJI	RGCY	6 cut(s)	21, 49, 75, 97, 111, 186
CviKI_1	RGCY	6 cut(s)	21, 49, 75, 97, 111, 186
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	4 cut(s)	68, 106, 241, 254
FaiI	YATR	7 cut(s)	66, 104, 152, 162, 172, 239, 252
FatI	CATG	4 cut(s)	64, 102, 237, 250
GlaI	GCGC	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	21, 75, 186
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	68, 106, 241, 254
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 183
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	68, 106, 241, 254
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	28
LpnPI	CCDG	2 cut(s)	192, 209
MaeII	ACGT	1 cut(s)	158
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	16, 190
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	23, 139
MnlI	CCTC	5 cut(s)	11, 51, 100, 204, 258
MroXI	GAANNNNTTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	46, 183
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	68, 106, 241, 254
NlaIV	GGNNCC	2 cut(s)	30, 246
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	30, 246
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	185
SetI	ASST	3 cut(s)	51, 99, 161
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	2 cut(s)	23, 139
StyI	CCWWGG	1 cut(s)	188
TaiI	ACGT	1 cut(s)	161
TasI	AATT	2 cut(s)	23, 139
TfiI	GAWTC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.