Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Forward (+)

26591246 .. 26591917

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTAGAAAATGATGGATTTGGGAAGTGGTCAGATTTGAGATTTCTAATAAAACCCATTTTGGTTAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGAAGATGCAACTAATTCATGGAGTCACCTTGAGAACCTCATTAGCGCCGGGAGTAACGACGTGGATTTCTATAATTTCCTATTGGATTTCTATAATTTCCTATATACAAGATATCTAAATTCCTTGAGGCAGTCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACATTGTTGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACTTGGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCAGAATTGATGAGGTAACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

139

Amino Acids

15.84

Weight (kDa)

5.05

Isoelectric Point (pI)

15.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	232
AdeI	CACNNNGTG	1 cut(s)	263
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	82, 313, 371
AluI	AGCT	3 cut(s)	82, 313, 371
Alw26I	GTCTC	2 cut(s)	375, 385
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspLEI	GCGC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	8, 98
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	375, 385
BfoI	RGCGCY	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	314
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	163, 261
BmgBI	CACGTC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	163, 261
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	164, 259
BpuMI	CCSGG	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	162, 378
BsmAI	GTCTC	2 cut(s)	375, 385
BsmI	GAATGC	1 cut(s)	351
Bso31I	GGTCTC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	84, 274
Bsp1720I	GCTNAGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	385
BssMI	GATC	2 cut(s)	84, 274
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	71
BstAFI	CTTAAG	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	87, 277
BstMAI	GTCTC	2 cut(s)	375, 385
BstMBI	GATC	2 cut(s)	84, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	2 cut(s)	161, 259
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	1 cut(s)	161
CsiI	ACCWGGT	1 cut(s)	259
CviAII	CATG	2 cut(s)	132, 388
CviJI	RGCY	4 cut(s)	77, 82, 313, 371
CviKI_1	RGCY	4 cut(s)	77, 82, 313, 371
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	86, 276
DpnII	GATC	2 cut(s)	84, 274
DraIII	CACNNNGTG	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	227
FaeI	CATG	2 cut(s)	135, 391
FaiI	YATR	8 cut(s)	133, 186, 207, 217, 219, 374, 389, 418
FatI	CATG	2 cut(s)	131, 387
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	162
HapII	CCGG	2 cut(s)	162, 378
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	135, 391
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	136
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	2 cut(s)	162, 378
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	34, 355
Hpy188III	TCNNGA	2 cut(s)	278, 388
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	122, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	135, 391
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	84, 274
LpnPI	CCDG	5 cut(s)	175, 246, 273, 391, 409
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	109
MabI	ACCWGGT	1 cut(s)	259
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	4 cut(s)	137, 167, 334, 409
MalI	GATC	2 cut(s)	86, 276
MboI	GATC	2 cut(s)	84, 274
MboII	GAAGA	2 cut(s)	128, 240
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	6 cut(s)	110, 127, 187, 208, 232, 399
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	161, 234, 400
MseI	TTAA	4 cut(s)	66, 99, 303, 315
MspA1I	CMGCKG	1 cut(s)	82
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	162, 378
MspR9I	CCNGG	2 cut(s)	163, 261
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	84, 274
NlaIII	CATG	2 cut(s)	135, 391
NmuCI	GTSAC	2 cut(s)	137, 334
NspV	TTCGAA	1 cut(s)	366
PagI	TCATGA	1 cut(s)	387
PctI	GAATGC	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	82
SaqAI	TTAA	4 cut(s)	66, 99, 303, 315
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	84, 274
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	163, 261
SetI	ASST	8 cut(s)	84, 144, 153, 177, 265, 315, 373, 411
SexAI	ACCWGGT	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	143, 238, 314
SmoI	CTYRAG	3 cut(s)	143, 238, 314
Sse9I	AATT	6 cut(s)	110, 127, 187, 208, 232, 399
StyD4I	CCNGG	2 cut(s)	161, 259
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	366
TasI	AATT	6 cut(s)	110, 127, 187, 208, 232, 399
Tru1I	TTAA	4 cut(s)	66, 99, 303, 315
Tru9I	TTAA	4 cut(s)	66, 99, 303, 315
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	137, 334
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	137, 334
TspDTI	ATGAA	3 cut(s)	120, 240, 376
TspRI	CASTG	1 cut(s)	76
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.