Rh5BG186800

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
20499733 .. 20501034
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG186800.1

Sequence Viewer

Length: 1302 bp
ATGGAGATCCCAGTCCCACCGGAGAAGGAGCCAACATTTCTGGAGATTAACATGCCTGAATGCATTGAAGCAGCGAACAAGTTGTCGTCTCTTCTAACAAGAACATGGTTCTTGCAAGGAACTCCCATTTCTGTCTCTGCAGGTTTTGCTTCCTCTGTGAAAAATCGTCTACGCGATCCAAAAACATCAACCATTTTCAACACTATCTGCTCCGATTTCCCGAAGGTGCACCAGTTGATGAAAACCCATAAGAGAACCCGACGCACACTGAAGTTCCAAACTCTTCTTGAGAGAGACATGGGTGTTCACGACCTCGTGCCTCGCATTCAGAAGGAGCTAAGAAGCATGGCCATGGTTGAAGTTGCATTGAAAGGTGGATTTGAAAGTGAAAAGGTAAAAGAACGTCTGAAGAAGTGTAAGGAGAACACCCAAGGCTTGGAGCTGGAAGTTGAAATCTTGGAGGCTATTCGTGCGCCAGAGAAGAGTGATGAGCAAGATTTAGACTTTGTTGCTATCTGGGGTGGAAAAGAAGAGATAGAGGTTTCTGGTGAAGTCTTGGACGAGTGGAACCGATTCTTGAATGAAGGGCTTGATAAAATTAACAATGCTCAGGAACAAGCACAAGTAGTCTCGGTTGAGAATCCAAGGTTCACAGAATCGAAGGGAAAGGAAATGCGGGCTTATACTGGAGGAAAAGAAGCATGTCAAGGCAAAAAGGAGGAACCAAGTCTAGTAATTTTGTCCAATTGGGTCAGGAAGAATCAAAGTAGCCGGTCTCCGGTCTGGGACTCTCTCTGGCTTTGCTTGACTGATGCTGTGATGTTGGGGTGTCAAGCCTCTGTGCTCCTCGAATTCTTGTTGGTCTCACTGCCAGAGAGCCAAGAAAGAGAGATGAAGATTGGGCAGCTTAAGGCTGCACTGGGAAAGCTTGATAAAGATGGAAGAAACATTGCAGCTAAGAGAGTCTTGGAGTTGGACCTCTTCAGGTTCCCAAGTCAGAACATGATTGGTGCTGCTGCTGGTGTTCAAGCTGCTGCTGCTGATGATAGAACAATTTACCAGTTGAAGAAGCTGTTTATTACAGTGAACTTGATGTTCCGTCATCCCATTTCTCTCGGGAAAGGAGACCAGCCTGTGGTTTCTCTGAAAAGCTATGCCGGACAGTGCACTAAACTAGTAAATGCGCTGAAGCAGAAATTGCGGATGCCTGAGGAGCACTGGATTGTGGAGGTGGAGAGAATGATGAAGTCATGGGAGCCCCTAAACGTCAGTCGTCTCAGTTTGTTCAAAACAGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

433

Amino Acids

49.04

Weight (kDa)

8.32

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB7I CCANNNNNTGG 2 cut(s) 436, 1135
AccI GTMKAC 1 cut(s) 169
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 676, 1201
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 851
AcuI CTGAAG 4 cut(s) 290, 428, 967, 1208
AfiI CCNNNNNNNGG 3 cut(s) 436, 778, 1135
AflII CTTAAG 1 cut(s) 908
AhlI ACTAGT 1 cut(s) 1174
AluBI AGCT 8 cut(s) 337, 442, 907, 928, 956, 1031, 1072, 1152
AluI AGCT 8 cut(s) 337, 442, 907, 928, 956, 1031, 1072, 1152
Alw21I GWGCWC 4 cut(s) 231, 846, 1169, 1218
Alw26I GTCTC 8 cut(s) 93, 139, 288, 634, 780, 868, 1119, 1280
Alw44I GTGCAC 2 cut(s) 227, 1165
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 1115
AoxI GGCC 1 cut(s) 348
ApaLI GTGCAC 2 cut(s) 227, 1165
ApeKI GCWGC 9 cut(s) 71, 904, 914, 953, 1013, 1016, 1031, 1034, 1037
ApoI RAATTY 1 cut(s) 851
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 572
AspLEI GCGC 2 cut(s) 475, 1186
AspS9I GGNCC 1 cut(s) 976
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 1115
AvaII GGWCC 1 cut(s) 976
AxyI CCTNAGG 1 cut(s) 1209
BaeGI GKGCMC 2 cut(s) 231, 1169
BalI TGGCCA 1 cut(s) 350
BanII GRGCYC 1 cut(s) 1260
BauI CACGAG 1 cut(s) 314
Bbv12I GWGCWC 4 cut(s) 231, 846, 1169, 1218
BbvI GCAGC 9 cut(s) 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024
BccI CCATC 1 cut(s) 932
BcoDI GTCTC 8 cut(s) 93, 139, 288, 634, 780, 868, 1119, 1280
BcuI ACTAGT 1 cut(s) 1174
BfaI CTAG 2 cut(s) 731, 1175
BfmI CTRYAG 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 9 cut(s) 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038
BlsI GCNGC 9 cut(s) 73, 906, 916, 955, 1015, 1018, 1033, 1036, 1039
Bme18I GGWCC 1 cut(s) 976
BmeT110I CYCGRG 1 cut(s) 1115
BmgT120I GGNCC 1 cut(s) 976
BmiI GGNNCC 5 cut(s) 30, 569, 723, 989, 1257
BmrI ACTGGG 2 cut(s) 5, 929
BmsI GCATC 2 cut(s) 802, 1194
BmuI ACTGGG 2 cut(s) 5, 929
BpmI CTGGAG 2 cut(s) 62, 708
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 308
BsaI GGTCTC 3 cut(s) 780, 868, 1119
BsaJI CCNNGG 3 cut(s) 351, 430, 644
BsaWI WCCGGW 2 cut(s) 19, 778
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 778, 1135
Bse118I RCCGGY 1 cut(s) 771
Bse1I ACTGG 6 cut(s) 11, 232, 691, 924, 1060, 1223
Bse21I CCTNAGG 1 cut(s) 1209
Bse3DI GCAATG 1 cut(s) 948
BseDI CCNNGG 3 cut(s) 351, 430, 644
BseGI GGATG 2 cut(s) 1102, 1209
BseLI CCNNNNNNNGG 3 cut(s) 436, 778, 1135
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 3 cut(s) 623, 1200, 1291
BseNI ACTGG 6 cut(s) 11, 232, 691, 924, 1060, 1223
BseRI GAGGAG 2 cut(s) 836, 1226
BseSI GKGCMC 2 cut(s) 231, 1169
BseXI GCAGC 9 cut(s) 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024
BsgI GTGCAG 1 cut(s) 900
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 4 cut(s) 231, 846, 1169, 1218
BsiHKCI CYCGRG 1 cut(s) 1115
BsiSI CCGG 4 cut(s) 20, 772, 779, 1158
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 3 cut(s) 436, 778, 1135
BsmAI GTCTC 8 cut(s) 93, 139, 288, 634, 780, 868, 1119, 1280
BsmBI CGTCTC 2 cut(s) 93, 1280
BsmFI GGGAC 1 cut(s) 800
BsmI GAATGC 2 cut(s) 65, 324
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 3 cut(s) 780, 868, 1119
BsoBI CYCGRG 1 cut(s) 1115
Bsp1286I GDGCHC 5 cut(s) 231, 846, 1169, 1218, 1260
Bsp143I GATC 2 cut(s) 6, 175
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 2 cut(s) 676, 1201
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 3 cut(s) 622, 1201, 1290
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 5 cut(s) 30, 569, 723, 989, 1257
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 170
BspTI CTTAAG 1 cut(s) 908
BspTNI GGTCTC 3 cut(s) 780, 868, 1119
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 1 cut(s) 771
BsrI ACTGG 6 cut(s) 11, 232, 691, 924, 1060, 1223
BssAI RCCGGY 1 cut(s) 771
BssECI CCNNGG 3 cut(s) 351, 430, 644
BssMI GATC 2 cut(s) 6, 175
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 3 cut(s) 351, 430, 644
Bst2BI CACGAG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 1084, 1164, 1294
Bst6I CTCTTC 5 cut(s) 96, 288, 476, 525, 986
BstAFI CTTAAG 1 cut(s) 908
BstAPI GCANNNNNTGC 2 cut(s) 146, 1198
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 5 cut(s) 338, 609, 957, 1209, 1277
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 1102, 1209
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 475, 1186
BstKTI GATC 2 cut(s) 9, 178
BstMAI GTCTC 8 cut(s) 93, 139, 288, 634, 780, 868, 1119, 1280
BstMBI GATC 2 cut(s) 6, 175
BstMWI GCNNNNNNNGC 5 cut(s) 146, 470, 1037, 1198, 1213
BstNSI RCATGY 2 cut(s) 55, 705
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 231, 1169
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 9 cut(s) 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 1209
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 1102, 1209
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 7 cut(s) 266, 866, 917, 1089, 1169, 1216, 1299
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 678
CfoI GCGC 2 cut(s) 475, 1186
Cfr10I RCCGGY 1 cut(s) 771
Cfr13I GGNCC 1 cut(s) 976
CseI GACGC 1 cut(s) 270
CviAII CATG 8 cut(s) 52, 105, 298, 346, 352, 702, 1003, 1251
DdeI CTNAG 5 cut(s) 338, 609, 957, 1209, 1277
DpnI GATC 2 cut(s) 8, 177
DpnII GATC 2 cut(s) 6, 175
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 5 cut(s) 96, 288, 476, 525, 986
EarI CTCTTC 5 cut(s) 96, 288, 476, 525, 986
Eco130I CCWWGG 3 cut(s) 351, 430, 644
Eco24I GRGCYC 1 cut(s) 1260
Eco31I GGTCTC 3 cut(s) 780, 868, 1119
Eco47I GGWCC 1 cut(s) 976
Eco57I CTGAAG 4 cut(s) 290, 428, 967, 1208
Eco81I CCTNAGG 1 cut(s) 1209
Eco88I CYCGRG 1 cut(s) 1115
EcoRI GAATTC 1 cut(s) 851
EcoT14I CCWWGG 3 cut(s) 351, 430, 644
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 1260
ErhI CCWWGG 3 cut(s) 351, 430, 644
Esp3I CGTCTC 2 cut(s) 93, 1280
FaeI CATG 8 cut(s) 55, 108, 301, 349, 355, 705, 1006, 1254
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FaqI GGGAC 1 cut(s) 800
FatI CATG 8 cut(s) 51, 104, 297, 345, 351, 701, 1002, 1250
FauI CCCGC 1 cut(s) 669
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 9 cut(s) 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038
FokI GGATG 2 cut(s) 1089, 1216
FriOI GRGCYC 1 cut(s) 1260
Fsp4HI GCNGC 9 cut(s) 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038
FspBI CTAG 2 cut(s) 731, 1175
GlaI GCGC 2 cut(s) 474, 1185
GluI GCNGC 9 cut(s) 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038
GsuI CTGGAG 2 cut(s) 62, 708
HaeIII GGCC 1 cut(s) 350
HapII CCGG 4 cut(s) 20, 772, 779, 1158
HgaI GACGC 1 cut(s) 270
HhaI GCGC 2 cut(s) 475, 1186
Hin1II CATG 8 cut(s) 55, 108, 301, 349, 355, 705, 1006, 1254
Hin6I GCGC 2 cut(s) 473, 1184
HinP1I GCGC 2 cut(s) 473, 1184
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 6 cut(s) 573, 640, 656, 760, 788, 963
HpaII CCGG 4 cut(s) 20, 772, 779, 1158
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 6 cut(s) 170, 229, 307, 651, 1087, 1167
Hpy188I TCNGA 5 cut(s) 214, 330, 408, 999, 1146
Hpy188III TCNNGA 8 cut(s) 41, 220, 287, 308, 577, 611, 754, 1117
Hpy8I GTNNAC 6 cut(s) 170, 229, 307, 651, 1087, 1167
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 5 cut(s) 19, 217, 325, 578, 655
HpyCH4III ACNGT 3 cut(s) 1084, 1164, 1294
HpyCH4IV ACGT 2 cut(s) 403, 1266
HpyCH4V TGCA 8 cut(s) 63, 115, 140, 229, 365, 917, 953, 1167
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 470, 1037, 1198, 1213
HpyF3I CTNAG 5 cut(s) 338, 609, 957, 1209, 1277
HpySE526I ACGT 2 cut(s) 403, 1266
Hsp92II CATG 8 cut(s) 55, 108, 301, 349, 355, 705, 1006, 1254
HspAI GCGC 2 cut(s) 473, 1184
Kzo9I GATC 2 cut(s) 6, 175
LmnI GCTCC 7 cut(s) 28, 215, 334, 439, 849, 1213, 1255
Lsp1109I GCAGC 9 cut(s) 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024
LweI GCATC 2 cut(s) 802, 1194
MaeI CTAG 2 cut(s) 731, 1175
MaeII ACGT 2 cut(s) 403, 1266
MalI GATC 2 cut(s) 8, 177
MboI GATC 2 cut(s) 6, 175
MfeI CAATTG 1 cut(s) 745
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 5 cut(s) 231, 846, 1169, 1218, 1260
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 6 cut(s) 597, 735, 745, 851, 1053, 1196
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 2 cut(s) 782, 972
MmeI TCCRAC 1 cut(s) 954
Mox20I TGGCCA 1 cut(s) 350
Mph1103I ATGCAT 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 350
MseI TTAA 3 cut(s) 48, 600, 909
MslI CAYNNNNRTG 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 350
MspCI CTTAAG 1 cut(s) 908
MspI CCGG 4 cut(s) 20, 772, 779, 1158
MunI CAATTG 1 cut(s) 745
Mva1269I GAATGC 2 cut(s) 65, 324
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 146, 470, 1037, 1198, 1213
NcoI CCATGG 1 cut(s) 351
NdeII GATC 2 cut(s) 6, 175
NlaIII CATG 8 cut(s) 55, 108, 301, 349, 355, 705, 1006, 1254
NlaIV GGNNCC 5 cut(s) 30, 569, 723, 989, 1257
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 2 cut(s) 55, 705
PctI GAATGC 2 cut(s) 65, 324
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 4 cut(s) 573, 640, 656, 760
PflMI CCANNNNNTGG 2 cut(s) 436, 1135
PkrI GCNGC 9 cut(s) 73, 906, 916, 955, 1015, 1018, 1033, 1036, 1039
PleI GAGTC 2 cut(s) 782, 971
PpsI GAGTC 2 cut(s) 782, 971
PspN4I GGNNCC 5 cut(s) 30, 569, 723, 989, 1257
PspPI GGNCC 1 cut(s) 976
PstI CTGCAG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 3 cut(s) 48, 600, 909
SatI GCNGC 9 cut(s) 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038
Sau3AI GATC 2 cut(s) 6, 175
Sau96I GGNCC 1 cut(s) 976
SchI GAGTC 2 cut(s) 782, 972
SduI GDGCHC 5 cut(s) 231, 846, 1169, 1218, 1260
SfaNI GCATC 2 cut(s) 802, 1194
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 976
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 287, 908
SmoI CTYRAG 2 cut(s) 287, 908
SpeI ACTAGT 1 cut(s) 1174
Sse9I AATT 6 cut(s) 597, 735, 745, 851, 1053, 1196
SsiI CCGC 2 cut(s) 676, 1201
SspMI CTAG 2 cut(s) 731, 1175
StyI CCWWGG 3 cut(s) 351, 430, 644
TaaI ACNGT 3 cut(s) 1084, 1164, 1294
TaiI ACGT 2 cut(s) 406, 1269
TaqI TCGA 2 cut(s) 659, 849
TasI AATT 6 cut(s) 597, 735, 745, 851, 1053, 1196
TfiI GAWTC 4 cut(s) 573, 640, 656, 760
Tru1I TTAA 3 cut(s) 48, 600, 909
Tru9I TTAA 3 cut(s) 48, 600, 909
TscAI CASTG 7 cut(s) 273, 873, 924, 1089, 1169, 1223, 1299
TseI GCWGC 9 cut(s) 71, 904, 914, 953, 1013, 1016, 1031, 1034, 1037
TspDTI ATGAA 4 cut(s) 254, 597, 908, 1259
TspGWI ACGGA 1 cut(s) 1088
TspRI CASTG 7 cut(s) 273, 873, 924, 1089, 1169, 1223, 1299
Van91I CCANNNNNTGG 2 cut(s) 436, 1135
Vha464I CTTAAG 1 cut(s) 908
VneI GTGCAC 2 cut(s) 227, 1165
VpaK11BI GGWCC 1 cut(s) 976
XapI RAATTY 1 cut(s) 851
XceI RCATGY 2 cut(s) 55, 705
XmiI GTMKAC 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 2 cut(s) 731, 1175
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.