divergent subfamily of APPLE domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g15942 FvH4_3g15943 |
| rosa_chinensis | RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881 |
| rosa_laevigata | RLG00000032967 |
| rosa_multiflora | Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00358840 |
| rosa_samantha | Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100 |
| rosa_wichuraiana | Rw5G017200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 131 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 436, 1135 |
| AccI | GTMKAC | 1 cut(s) | 169 |
| AccII | CGCG | 1 cut(s) | 174 |
| AciI | CCGC | 2 cut(s) | 676, 1201 |
| AclWI | GGATC | 1 cut(s) | 170 |
| AcoI | YGGCCR | 1 cut(s) | 348 |
| AcsI | RAATTY | 1 cut(s) | 851 |
| AcuI | CTGAAG | 4 cut(s) | 290, 428, 967, 1208 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 436, 778, 1135 |
| AflII | CTTAAG | 1 cut(s) | 908 |
| AhlI | ACTAGT | 1 cut(s) | 1174 |
| AluBI | AGCT | 8 cut(s) | 337, 442, 907, 928, 956, 1031, 1072, 1152 |
| AluI | AGCT | 8 cut(s) | 337, 442, 907, 928, 956, 1031, 1072, 1152 |
| Alw21I | GWGCWC | 4 cut(s) | 231, 846, 1169, 1218 |
| Alw26I | GTCTC | 8 cut(s) | 93, 139, 288, 634, 780, 868, 1119, 1280 |
| Alw44I | GTGCAC | 2 cut(s) | 227, 1165 |
| AlwI | GGATC | 1 cut(s) | 170 |
| Ama87I | CYCGRG | 1 cut(s) | 1115 |
| AoxI | GGCC | 1 cut(s) | 348 |
| ApaLI | GTGCAC | 2 cut(s) | 227, 1165 |
| ApeKI | GCWGC | 9 cut(s) | 71, 904, 914, 953, 1013, 1016, 1031, 1034, 1037 |
| ApoI | RAATTY | 1 cut(s) | 851 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 68, 100 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 572 |
| AspLEI | GCGC | 2 cut(s) | 475, 1186 |
| AspS9I | GGNCC | 1 cut(s) | 976 |
| AsuHPI | GGTGA | 1 cut(s) | 560 |
| AvaI | CYCGRG | 1 cut(s) | 1115 |
| AvaII | GGWCC | 1 cut(s) | 976 |
| AxyI | CCTNAGG | 1 cut(s) | 1209 |
| BaeGI | GKGCMC | 2 cut(s) | 231, 1169 |
| BalI | TGGCCA | 1 cut(s) | 350 |
| BanII | GRGCYC | 1 cut(s) | 1260 |
| BauI | CACGAG | 1 cut(s) | 314 |
| Bbv12I | GWGCWC | 4 cut(s) | 231, 846, 1169, 1218 |
| BbvI | GCAGC | 9 cut(s) | 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024 |
| BccI | CCATC | 1 cut(s) | 932 |
| BcoDI | GTCTC | 8 cut(s) | 93, 139, 288, 634, 780, 868, 1119, 1280 |
| BcuI | ACTAGT | 1 cut(s) | 1174 |
| BfaI | CTAG | 2 cut(s) | 731, 1175 |
| BfmI | CTRYAG | 1 cut(s) | 138 |
| BfrI | CTTAAG | 1 cut(s) | 908 |
| BfuAI | ACCTGC | 1 cut(s) | 131 |
| BisI | GCNGC | 9 cut(s) | 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038 |
| BlsI | GCNGC | 9 cut(s) | 73, 906, 916, 955, 1015, 1018, 1033, 1036, 1039 |
| Bme18I | GGWCC | 1 cut(s) | 976 |
| BmeT110I | CYCGRG | 1 cut(s) | 1115 |
| BmgT120I | GGNCC | 1 cut(s) | 976 |
| BmiI | GGNNCC | 5 cut(s) | 30, 569, 723, 989, 1257 |
| BmrI | ACTGGG | 2 cut(s) | 5, 929 |
| BmsI | GCATC | 2 cut(s) | 802, 1194 |
| BmuI | ACTGGG | 2 cut(s) | 5, 929 |
| BpmI | CTGGAG | 2 cut(s) | 62, 708 |
| Bpu10I | CCTNAGC | 1 cut(s) | 609 |
| BpuEI | CTTGAG | 1 cut(s) | 308 |
| BsaI | GGTCTC | 3 cut(s) | 780, 868, 1119 |
| BsaJI | CCNNGG | 3 cut(s) | 351, 430, 644 |
| BsaWI | WCCGGW | 2 cut(s) | 19, 778 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 436, 778, 1135 |
| Bse118I | RCCGGY | 1 cut(s) | 771 |
| Bse1I | ACTGG | 6 cut(s) | 11, 232, 691, 924, 1060, 1223 |
| Bse21I | CCTNAGG | 1 cut(s) | 1209 |
| Bse3DI | GCAATG | 1 cut(s) | 948 |
| BseDI | CCNNGG | 3 cut(s) | 351, 430, 644 |
| BseGI | GGATG | 2 cut(s) | 1102, 1209 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 436, 778, 1135 |
| BseMI | GCAATG | 1 cut(s) | 948 |
| BseMII | CTCAG | 3 cut(s) | 623, 1200, 1291 |
| BseNI | ACTGG | 6 cut(s) | 11, 232, 691, 924, 1060, 1223 |
| BseRI | GAGGAG | 2 cut(s) | 836, 1226 |
| BseSI | GKGCMC | 2 cut(s) | 231, 1169 |
| BseXI | GCAGC | 9 cut(s) | 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024 |
| BsgI | GTGCAG | 1 cut(s) | 900 |
| Bsh1236I | CGCG | 1 cut(s) | 174 |
| BshFI | GGCC | 1 cut(s) | 350 |
| BsiHKAI | GWGCWC | 4 cut(s) | 231, 846, 1169, 1218 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1115 |
| BsiSI | CCGG | 4 cut(s) | 20, 772, 779, 1158 |
| BslFI | GGGAC | 1 cut(s) | 800 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 436, 778, 1135 |
| BsmAI | GTCTC | 8 cut(s) | 93, 139, 288, 634, 780, 868, 1119, 1280 |
| BsmBI | CGTCTC | 2 cut(s) | 93, 1280 |
| BsmFI | GGGAC | 1 cut(s) | 800 |
| BsmI | GAATGC | 2 cut(s) | 65, 324 |
| BsnI | GGCC | 1 cut(s) | 350 |
| Bso31I | GGTCTC | 3 cut(s) | 780, 868, 1119 |
| BsoBI | CYCGRG | 1 cut(s) | 1115 |
| Bsp1286I | GDGCHC | 5 cut(s) | 231, 846, 1169, 1218, 1260 |
| Bsp143I | GATC | 2 cut(s) | 6, 175 |
| Bsp19I | CCATGG | 1 cut(s) | 351 |
| BspACI | CCGC | 2 cut(s) | 676, 1201 |
| BspANI | GGCC | 1 cut(s) | 350 |
| BspCNI | CTCAG | 3 cut(s) | 622, 1201, 1290 |
| BspFNI | CGCG | 1 cut(s) | 174 |
| BspLI | GGNNCC | 5 cut(s) | 30, 569, 723, 989, 1257 |
| BspMAI | CTGCAG | 1 cut(s) | 142 |
| BspMI | ACCTGC | 1 cut(s) | 131 |
| BspPI | GGATC | 1 cut(s) | 170 |
| BspTI | CTTAAG | 1 cut(s) | 908 |
| BspTNI | GGTCTC | 3 cut(s) | 780, 868, 1119 |
| BsrDI | GCAATG | 1 cut(s) | 948 |
| BsrFI | RCCGGY | 1 cut(s) | 771 |
| BsrI | ACTGG | 6 cut(s) | 11, 232, 691, 924, 1060, 1223 |
| BssAI | RCCGGY | 1 cut(s) | 771 |
| BssECI | CCNNGG | 3 cut(s) | 351, 430, 644 |
| BssMI | GATC | 2 cut(s) | 6, 175 |
| BssSI | CACGAG | 1 cut(s) | 314 |
| BssT1I | CCWWGG | 3 cut(s) | 351, 430, 644 |
| Bst2BI | CACGAG | 1 cut(s) | 314 |
| Bst4CI | ACNGT | 3 cut(s) | 1084, 1164, 1294 |
| Bst6I | CTCTTC | 5 cut(s) | 96, 288, 476, 525, 986 |
| BstAFI | CTTAAG | 1 cut(s) | 908 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 146, 1198 |
| BstC8I | GCNNGC | 1 cut(s) | 678 |
| BstDEI | CTNAG | 5 cut(s) | 338, 609, 957, 1209, 1277 |
| BstDSI | CCRYGG | 1 cut(s) | 351 |
| BstF5I | GGATG | 2 cut(s) | 1102, 1209 |
| BstFNI | CGCG | 1 cut(s) | 174 |
| BstHHI | GCGC | 2 cut(s) | 475, 1186 |
| BstKTI | GATC | 2 cut(s) | 9, 178 |
| BstMAI | GTCTC | 8 cut(s) | 93, 139, 288, 634, 780, 868, 1119, 1280 |
| BstMBI | GATC | 2 cut(s) | 6, 175 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 146, 470, 1037, 1198, 1213 |
| BstNSI | RCATGY | 2 cut(s) | 55, 705 |
| BstSFI | CTRYAG | 1 cut(s) | 138 |
| BstSLI | GKGCMC | 2 cut(s) | 231, 1169 |
| BstUI | CGCG | 1 cut(s) | 174 |
| BstV1I | GCAGC | 9 cut(s) | 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024 |
| BstX2I | RGATCY | 1 cut(s) | 6 |
| BstYI | RGATCY | 1 cut(s) | 6 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1209 |
| BsuRI | GGCC | 1 cut(s) | 350 |
| BtgI | CCRYGG | 1 cut(s) | 351 |
| BtsCI | GGATG | 2 cut(s) | 1102, 1209 |
| BtsI | GCAGTG | 1 cut(s) | 866 |
| BtsIMutI | CAGTG | 7 cut(s) | 266, 866, 917, 1089, 1169, 1216, 1299 |
| BveI | ACCTGC | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 1 cut(s) | 678 |
| CfoI | GCGC | 2 cut(s) | 475, 1186 |
| Cfr10I | RCCGGY | 1 cut(s) | 771 |
| Cfr13I | GGNCC | 1 cut(s) | 976 |
| CseI | GACGC | 1 cut(s) | 270 |
| CviAII | CATG | 8 cut(s) | 52, 105, 298, 346, 352, 702, 1003, 1251 |
| DdeI | CTNAG | 5 cut(s) | 338, 609, 957, 1209, 1277 |
| DpnI | GATC | 2 cut(s) | 8, 177 |
| DpnII | GATC | 2 cut(s) | 6, 175 |
| EaeI | YGGCCR | 1 cut(s) | 348 |
| Eam1104I | CTCTTC | 5 cut(s) | 96, 288, 476, 525, 986 |
| EarI | CTCTTC | 5 cut(s) | 96, 288, 476, 525, 986 |
| Eco130I | CCWWGG | 3 cut(s) | 351, 430, 644 |
| Eco24I | GRGCYC | 1 cut(s) | 1260 |
| Eco31I | GGTCTC | 3 cut(s) | 780, 868, 1119 |
| Eco47I | GGWCC | 1 cut(s) | 976 |
| Eco57I | CTGAAG | 4 cut(s) | 290, 428, 967, 1208 |
| Eco81I | CCTNAGG | 1 cut(s) | 1209 |
| Eco88I | CYCGRG | 1 cut(s) | 1115 |
| EcoRI | GAATTC | 1 cut(s) | 851 |
| EcoT14I | CCWWGG | 3 cut(s) | 351, 430, 644 |
| EcoT22I | ATGCAT | 1 cut(s) | 65 |
| EcoT38I | GRGCYC | 1 cut(s) | 1260 |
| ErhI | CCWWGG | 3 cut(s) | 351, 430, 644 |
| Esp3I | CGTCTC | 2 cut(s) | 93, 1280 |
| FaeI | CATG | 8 cut(s) | 55, 108, 301, 349, 355, 705, 1006, 1254 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 950, 982 |
| FaqI | GGGAC | 1 cut(s) | 800 |
| FatI | CATG | 8 cut(s) | 51, 104, 297, 345, 351, 701, 1002, 1250 |
| FauI | CCCGC | 1 cut(s) | 669 |
| FblI | GTMKAC | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 9 cut(s) | 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038 |
| FokI | GGATG | 2 cut(s) | 1089, 1216 |
| FriOI | GRGCYC | 1 cut(s) | 1260 |
| Fsp4HI | GCNGC | 9 cut(s) | 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038 |
| FspBI | CTAG | 2 cut(s) | 731, 1175 |
| GlaI | GCGC | 2 cut(s) | 474, 1185 |
| GluI | GCNGC | 9 cut(s) | 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038 |
| GsuI | CTGGAG | 2 cut(s) | 62, 708 |
| HaeIII | GGCC | 1 cut(s) | 350 |
| HapII | CCGG | 4 cut(s) | 20, 772, 779, 1158 |
| HgaI | GACGC | 1 cut(s) | 270 |
| HhaI | GCGC | 2 cut(s) | 475, 1186 |
| Hin1II | CATG | 8 cut(s) | 55, 108, 301, 349, 355, 705, 1006, 1254 |
| Hin6I | GCGC | 2 cut(s) | 473, 1184 |
| HinP1I | GCGC | 2 cut(s) | 473, 1184 |
| HindIII | AAGCTT | 1 cut(s) | 926 |
| HinfI | GANTC | 6 cut(s) | 573, 640, 656, 760, 788, 963 |
| HpaII | CCGG | 4 cut(s) | 20, 772, 779, 1158 |
| HphI | GGTGA | 1 cut(s) | 560 |
| Hpy166II | GTNNAC | 6 cut(s) | 170, 229, 307, 651, 1087, 1167 |
| Hpy188I | TCNGA | 5 cut(s) | 214, 330, 408, 999, 1146 |
| Hpy188III | TCNNGA | 8 cut(s) | 41, 220, 287, 308, 577, 611, 754, 1117 |
| Hpy8I | GTNNAC | 6 cut(s) | 170, 229, 307, 651, 1087, 1167 |
| Hpy99I | CGWCG | 1 cut(s) | 264 |
| HpyAV | CCTTC | 5 cut(s) | 19, 217, 325, 578, 655 |
| HpyCH4III | ACNGT | 3 cut(s) | 1084, 1164, 1294 |
| HpyCH4IV | ACGT | 2 cut(s) | 403, 1266 |
| HpyCH4V | TGCA | 8 cut(s) | 63, 115, 140, 229, 365, 917, 953, 1167 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 146, 470, 1037, 1198, 1213 |
| HpyF3I | CTNAG | 5 cut(s) | 338, 609, 957, 1209, 1277 |
| HpySE526I | ACGT | 2 cut(s) | 403, 1266 |
| Hsp92II | CATG | 8 cut(s) | 55, 108, 301, 349, 355, 705, 1006, 1254 |
| HspAI | GCGC | 2 cut(s) | 473, 1184 |
| Kzo9I | GATC | 2 cut(s) | 6, 175 |
| LmnI | GCTCC | 7 cut(s) | 28, 215, 334, 439, 849, 1213, 1255 |
| Lsp1109I | GCAGC | 9 cut(s) | 83, 901, 916, 965, 1000, 1003, 1018, 1021, 1024 |
| LweI | GCATC | 2 cut(s) | 802, 1194 |
| MaeI | CTAG | 2 cut(s) | 731, 1175 |
| MaeII | ACGT | 2 cut(s) | 403, 1266 |
| MalI | GATC | 2 cut(s) | 8, 177 |
| MboI | GATC | 2 cut(s) | 6, 175 |
| MfeI | CAATTG | 1 cut(s) | 745 |
| MflI | RGATCY | 1 cut(s) | 6 |
| MhlI | GDGCHC | 5 cut(s) | 231, 846, 1169, 1218, 1260 |
| MlsI | TGGCCA | 1 cut(s) | 350 |
| MluCI | AATT | 6 cut(s) | 597, 735, 745, 851, 1053, 1196 |
| MluNI | TGGCCA | 1 cut(s) | 350 |
| MlyI | GAGTC | 2 cut(s) | 782, 972 |
| MmeI | TCCRAC | 1 cut(s) | 954 |
| Mox20I | TGGCCA | 1 cut(s) | 350 |
| Mph1103I | ATGCAT | 1 cut(s) | 65 |
| MroXI | GAANNNNTTC | 1 cut(s) | 572 |
| MscI | TGGCCA | 1 cut(s) | 350 |
| MseI | TTAA | 3 cut(s) | 48, 600, 909 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| Msp20I | TGGCCA | 1 cut(s) | 350 |
| MspCI | CTTAAG | 1 cut(s) | 908 |
| MspI | CCGG | 4 cut(s) | 20, 772, 779, 1158 |
| MunI | CAATTG | 1 cut(s) | 745 |
| Mva1269I | GAATGC | 2 cut(s) | 65, 324 |
| MvnI | CGCG | 1 cut(s) | 174 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 146, 470, 1037, 1198, 1213 |
| NcoI | CCATGG | 1 cut(s) | 351 |
| NdeII | GATC | 2 cut(s) | 6, 175 |
| NlaIII | CATG | 8 cut(s) | 55, 108, 301, 349, 355, 705, 1006, 1254 |
| NlaIV | GGNNCC | 5 cut(s) | 30, 569, 723, 989, 1257 |
| NsiI | ATGCAT | 1 cut(s) | 65 |
| NspI | RCATGY | 2 cut(s) | 55, 705 |
| PctI | GAATGC | 2 cut(s) | 65, 324 |
| PdmI | GAANNNNTTC | 1 cut(s) | 572 |
| PfeI | GAWTC | 4 cut(s) | 573, 640, 656, 760 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 436, 1135 |
| PkrI | GCNGC | 9 cut(s) | 73, 906, 916, 955, 1015, 1018, 1033, 1036, 1039 |
| PleI | GAGTC | 2 cut(s) | 782, 971 |
| PpsI | GAGTC | 2 cut(s) | 782, 971 |
| PspN4I | GGNNCC | 5 cut(s) | 30, 569, 723, 989, 1257 |
| PspPI | GGNCC | 1 cut(s) | 976 |
| PstI | CTGCAG | 1 cut(s) | 142 |
| PsuI | RGATCY | 1 cut(s) | 6 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 3 cut(s) | 48, 600, 909 |
| SatI | GCNGC | 9 cut(s) | 72, 905, 915, 954, 1014, 1017, 1032, 1035, 1038 |
| Sau3AI | GATC | 2 cut(s) | 6, 175 |
| Sau96I | GGNCC | 1 cut(s) | 976 |
| SchI | GAGTC | 2 cut(s) | 782, 972 |
| SduI | GDGCHC | 5 cut(s) | 231, 846, 1169, 1218, 1260 |
| SfaNI | GCATC | 2 cut(s) | 802, 1194 |
| SfcI | CTRYAG | 1 cut(s) | 138 |
| SinI | GGWCC | 1 cut(s) | 976 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 2 cut(s) | 287, 908 |
| SmoI | CTYRAG | 2 cut(s) | 287, 908 |
| SpeI | ACTAGT | 1 cut(s) | 1174 |
| Sse9I | AATT | 6 cut(s) | 597, 735, 745, 851, 1053, 1196 |
| SsiI | CCGC | 2 cut(s) | 676, 1201 |
| SspMI | CTAG | 2 cut(s) | 731, 1175 |
| StyI | CCWWGG | 3 cut(s) | 351, 430, 644 |
| TaaI | ACNGT | 3 cut(s) | 1084, 1164, 1294 |
| TaiI | ACGT | 2 cut(s) | 406, 1269 |
| TaqI | TCGA | 2 cut(s) | 659, 849 |
| TasI | AATT | 6 cut(s) | 597, 735, 745, 851, 1053, 1196 |
| TfiI | GAWTC | 4 cut(s) | 573, 640, 656, 760 |
| Tru1I | TTAA | 3 cut(s) | 48, 600, 909 |
| Tru9I | TTAA | 3 cut(s) | 48, 600, 909 |
| TscAI | CASTG | 7 cut(s) | 273, 873, 924, 1089, 1169, 1223, 1299 |
| TseI | GCWGC | 9 cut(s) | 71, 904, 914, 953, 1013, 1016, 1031, 1034, 1037 |
| TspDTI | ATGAA | 4 cut(s) | 254, 597, 908, 1259 |
| TspGWI | ACGGA | 1 cut(s) | 1088 |
| TspRI | CASTG | 7 cut(s) | 273, 873, 924, 1089, 1169, 1223, 1299 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 436, 1135 |
| Vha464I | CTTAAG | 1 cut(s) | 908 |
| VneI | GTGCAC | 2 cut(s) | 227, 1165 |
| VpaK11BI | GGWCC | 1 cut(s) | 976 |
| XapI | RAATTY | 1 cut(s) | 851 |
| XceI | RCATGY | 2 cut(s) | 55, 705 |
| XmiI | GTMKAC | 1 cut(s) | 169 |
| XmnI | GAANNNNTTC | 1 cut(s) | 572 |
| XspI | CTAG | 2 cut(s) | 731, 1175 |
| Zsp2I | ATGCAT | 1 cut(s) | 65 |