Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000395.1

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

137194 .. 137535

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000395.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggacccagtgtcagtgtctgtgacaaccactgaaatatcaccaaaaaaatttacatttataagatatacaagatatctaaattccttgaggcagtcttcattagcaccaggtggtaatggagatcttgacacattgttgaatggtgtcattaaaaggaagcttaagattatcccaaacaatgtgacttggggaatgcagtccgacaatgtgttcgaagctatgaccggagacttcatgagacccagaattgatgaggtaacaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

89

Amino Acids

10.01

Weight (kDa)

9.22

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	50, 82
AdeI	CACNNNGTG	1 cut(s)	113
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	142
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	163, 221
AluI	AGCT	2 cut(s)	163, 221
Alw26I	GTCTC	2 cut(s)	225, 235
AlwNI	CAGNNNCTG	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	50, 82
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	33
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	225, 235
BfrI	CTTAAG	1 cut(s)	164
BglII	AGATCT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	225, 235
BsmI	GAATGC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	216
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	225, 235
BstMBI	GATC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BtsIMutI	CAGTG	3 cut(s)	15, 21, 30
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	109
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	2 cut(s)	163, 221
CviKI_1	RGCY	2 cut(s)	163, 221
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	113
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1105I	GACNNNNNGTC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	77
FaeI	CATG	1 cut(s)	241
FaiI	YATR	5 cut(s)	62, 69, 224, 239, 268
FatI	CATG	1 cut(s)	237
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	161
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	128, 238
HpyCH4V	TGCA	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	21, 96, 123, 241, 259
MabI	ACCWGGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	22, 184, 259
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	90
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	3 cut(s)	50, 82, 249
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	84, 250
MseI	TTAA	2 cut(s)	153, 165
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	22, 184
NspV	TTCGAA	1 cut(s)	216
PagI	TCATGA	1 cut(s)	237
PctI	GAATGC	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	153, 165
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	4 cut(s)	115, 165, 223, 261
SexAI	ACCWGGT	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	88, 164
SmoI	CTYRAG	2 cut(s)	88, 164
Sse9I	AATT	3 cut(s)	50, 82, 249
StyD4I	CCNGG	1 cut(s)	109
TaqI	TCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	50, 82, 249
Tru1I	TTAA	2 cut(s)	153, 165
Tru9I	TTAA	2 cut(s)	153, 165
TscAI	CASTG	3 cut(s)	15, 21, 37
TseFI	GTSAC	2 cut(s)	22, 184
Tsp45I	GTSAC	2 cut(s)	22, 184
TspDTI	ATGAA	2 cut(s)	90, 226
TspRI	CASTG	3 cut(s)	15, 21, 37
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	50, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.