Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

76951634 .. 76953052

Gene Structure 1419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG540200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTAGAAAATGATGGATTTGGGAAGTGGTCAGATTTGAGATTTCTAATAAAACCCATTTTGGTTAACAGTGTGGCTCAGCTGATCAAGCAGCAGATTAAGGATGGGAAATTAGAAGATGCAACTAATTCATGGAGTCACCTTGAGAACCTCATTAGCGCCGGGAGTAACGACGTGGATTTCTATAATTTCCTATTGGATTCAGGAATGGACCCAGTGTCAGTGTCTGTGACAACCACTGAAATATCACCAAAAAAATTTACATTTACAAGATATACAAGATATCTAAATTCCTTGAGGCAGTCTTCATTAGCACCAGGTGGTAATGGAGATCTTGACACATTGTTGAATGGTGTCATTAAAAGGAAGCTTAAGATTATCCCAAACAATGTGACTTGGGGAATGCAGTCCGACAATGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCATAATTGATGAGGTTGATCAACTCCTTGCCAAAGGGGTCAATGTCACAATATACAATGGGCAAGTAAGGCTCCTCAAATCTTCTTTACTCAGGTTTCATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

185

Amino Acids

20.77

Weight (kDa)

6.12

Isoelectric Point (pI)

19.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	38 - 173	1.3e-07	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	257, 289
AdeI	CACNNNGTG	1 cut(s)	320
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	349
AhdI	GACNNNNNGTC	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	3 cut(s)	82, 370, 428
AluI	AGCT	3 cut(s)	82, 370, 428
Alw26I	GTCTC	2 cut(s)	432, 442
AlwNI	CAGNNNCTG	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	257, 289
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	131, 240
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	8, 98
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	2 cut(s)	84, 469
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	432, 442
BfoI	RGCGCY	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	163, 318
Bme18I	GGWCC	1 cut(s)	211
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	213, 524
BmrFI	CCNGG	2 cut(s)	163, 318
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	164, 316
BpuMI	CCSGG	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	92, 556
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	162, 435
BsmAI	GTCTC	2 cut(s)	432, 442
BsmI	GAATGC	1 cut(s)	408
Bso31I	GGTCTC	1 cut(s)	442
Bsp119I	TTCGAA	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	84, 331, 469
Bsp1720I	GCTNAGC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	91, 555
BspHI	TCATGA	2 cut(s)	444, 550
BspLI	GGNNCC	2 cut(s)	213, 524
BspT104I	TTCGAA	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	84, 331, 469
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	71
BstAFI	CTTAAG	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	78, 542
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	87, 334, 472
BstMAI	GTCTC	2 cut(s)	432, 442
BstMBI	GATC	3 cut(s)	84, 331, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 520
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	161, 316
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	4 cut(s)	76, 222, 228, 237
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	2 cut(s)	444, 550
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	211
CsiI	ACCWGGT	1 cut(s)	316
CviAII	CATG	3 cut(s)	132, 445, 551
CviJI	RGCY	5 cut(s)	77, 82, 370, 428, 523
CviKI_1	RGCY	5 cut(s)	77, 82, 370, 428, 523
DdeI	CTNAG	2 cut(s)	78, 542
DpnI	GATC	3 cut(s)	86, 333, 471
DpnII	GATC	3 cut(s)	84, 331, 469
DraIII	CACNNNGTG	1 cut(s)	320
DriI	GACNNNNNGTC	1 cut(s)	217
Eam1105I	GACNNNNNGTC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	284
FaeI	CATG	3 cut(s)	135, 448, 554
FaiI	YATR	8 cut(s)	133, 186, 276, 431, 446, 455, 505, 552
FatI	CATG	3 cut(s)	131, 444, 550
FbaI	TGATCA	2 cut(s)	84, 469
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	162
HapII	CCGG	2 cut(s)	162, 435
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	135, 448, 554
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	136, 200
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	2 cut(s)	162, 435
HphI	GGTGA	2 cut(s)	131, 240
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	34, 412
Hpy188III	TCNNGA	4 cut(s)	204, 335, 445, 551
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	122, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 520
HpyF3I	CTNAG	2 cut(s)	78, 542
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	135, 448, 554
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	2 cut(s)	84, 469
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	84, 331, 469
LmnI	GCTCC	1 cut(s)	528
LpnPI	CCDG	7 cut(s)	175, 189, 228, 303, 330, 448, 529
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	109
MabI	ACCWGGT	1 cut(s)	316
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	5 cut(s)	137, 167, 229, 391, 496
MalI	GATC	3 cut(s)	86, 333, 471
MboI	GATC	3 cut(s)	84, 331, 469
MboII	GAAGA	3 cut(s)	128, 297, 525
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	6 cut(s)	110, 127, 187, 257, 289, 456
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	4 cut(s)	161, 291, 457, 536
MseI	TTAA	5 cut(s)	66, 99, 360, 372, 556
MspA1I	CMGCKG	1 cut(s)	82
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	162, 435
MspR9I	CCNGG	2 cut(s)	163, 318
Mva1269I	GAATGC	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	88, 520
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	3 cut(s)	84, 331, 469
NlaIII	CATG	3 cut(s)	135, 448, 554
NlaIV	GGNNCC	2 cut(s)	213, 524
NmuCI	GTSAC	4 cut(s)	137, 229, 391, 496
NspV	TTCGAA	1 cut(s)	423
PagI	TCATGA	2 cut(s)	444, 550
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	213, 524
PspPI	GGNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	82
SaqAI	TTAA	5 cut(s)	66, 99, 360, 372, 556
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	3 cut(s)	84, 331, 469
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	163, 318
SetI	ASST	9 cut(s)	84, 144, 153, 177, 322, 372, 430, 468, 548
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	3 cut(s)	143, 295, 371
SmoI	CTYRAG	3 cut(s)	143, 295, 371
Sse9I	AATT	6 cut(s)	110, 127, 187, 257, 289, 456
StyD4I	CCNGG	2 cut(s)	161, 316
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	423
TasI	AATT	6 cut(s)	110, 127, 187, 257, 289, 456
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	5 cut(s)	66, 99, 360, 372, 556
Tru9I	TTAA	5 cut(s)	66, 99, 360, 372, 556
TscAI	CASTG	4 cut(s)	76, 222, 228, 244
TseFI	GTSAC	4 cut(s)	137, 229, 391, 496
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	4 cut(s)	137, 229, 391, 496
TspDTI	ATGAA	4 cut(s)	120, 297, 433, 539
TspRI	CASTG	4 cut(s)	76, 222, 228, 244
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	257, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.