Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004847

Physical Location & Seq

Genomic Coordinates Reverse (-)

11827331 .. 11836749

Gene Structure 9419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG095900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGAACATGGTAATACTACACTTGCCTCAACCTTGCAATTCCACAACTGCTGACTCTGTGGATCACCCACATCCGCTTTCAGTTCCAGAGACTTCAGCTTCATACGGGCTCAATATCTGTGATGGGAACATTCCTTGCTTGCCAATGTTTGGCTCTGCTGCAAAGGCACGACTTCAGGTTTCTGAAGTGGTTCTCGAGCAGATAAGGCAATTTAACCACCTTGATTTGGAGCTTTATAAATATGCAAAGGATATCTTTACAAAGCGACACAAGCATGCAGTGCAAGCTTTTGGTAGTTCAGAACGTATGCTTCTCTATGTCGCTCTTTTGGCCCTTGGTTTCTCTTCCTATCTGGGTAACAACCTTGGTGCCATAATCCATGTTCATGGCAGCTTCAACTTTTCTGCTCTTCTAGCGTTGAAATATTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006521 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008146 GO:0008150 GO:0008152 GO:0008476 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010364 GO:0010366 GO:0010468 GO:0010565 GO:0010817 GO:0012505 GO:0015012 GO:0015015 GO:0016740 GO:0016782 GO:0017095 GO:0019222 GO:0019538 GO:0019827 GO:0022622 GO:0030166 GO:0030201 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0031410 GO:0031982 GO:0031984 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0033238 GO:0033239 GO:0034483 GO:0034645 GO:0040008 GO:0042221 GO:0042592 GO:0042762 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045763 GO:0046885 GO:0048364 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048638 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0051239 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0060255 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097708 GO:0098727 GO:0098771 GO:0098791 GO:0099402 GO:0140096 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1 Sulfotransfer_2

Protein Analysis

145

Amino Acids

15.98

Weight (kDa)

7.8

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15942 FvH4_3g15943
rosa_chinensis	RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881
rosa_laevigata	RLG00000032967
rosa_multiflora	Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358840
rosa_samantha	Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100
rosa_wichuraiana	Rw5G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	152
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	72
AcuI	CTGAAG	3 cut(s)	81, 161, 207
AfiI	CCNNNNNNNGG	2 cut(s)	152, 229
AgsI	TTSAA	2 cut(s)	400, 424
AluBI	AGCT	4 cut(s)	101, 235, 290, 396
AluI	AGCT	4 cut(s)	101, 235, 290, 396
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	161, 393
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	148, 405
BccI	CCATC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	416
BisI	GCNGC	2 cut(s)	162, 394
BlsI	GCNGC	2 cut(s)	163, 395
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 229
BseDI	CCNNGG	2 cut(s)	337, 367
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	152, 229
BseXI	GCAGC	2 cut(s)	148, 405
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	371
BsiHKCI	CYCGRG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	152, 229
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	337, 367
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	337, 367
Bst6I	CTCTTC	2 cut(s)	352, 417
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	3 cut(s)	143, 279, 288
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 208, 274, 283, 287, 332, 416
BstNSI	RCATGY	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	148, 405
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	3 cut(s)	143, 279, 288
Cfr13I	GGNCC	1 cut(s)	334
CviAII	CATG	4 cut(s)	10, 278, 383, 389
CviJI	RGCY	7 cut(s)	101, 112, 156, 235, 290, 335, 396
CviKI_1	RGCY	7 cut(s)	101, 112, 156, 235, 290, 335, 396
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	352, 417
EarI	CTCTTC	2 cut(s)	352, 417
Eco130I	CCWWGG	2 cut(s)	337, 367
Eco24I	GRGCYC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	256
Eco57I	CTGAAG	3 cut(s)	81, 161, 207
Eco88I	CYCGRG	1 cut(s)	197
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	337, 367
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	337, 367
FaeI	CATG	4 cut(s)	13, 281, 386, 392
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	4 cut(s)	9, 277, 382, 388
Fnu4HI	GCNGC	2 cut(s)	162, 394
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	162, 394
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	2 cut(s)	162, 394
HaeIII	GGCC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	13, 281, 386, 392
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	187, 304
Hpy188III	TCNNGA	2 cut(s)	89, 197
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	5 cut(s)	39, 164, 248, 281, 286
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 208, 274, 283, 287, 332, 416
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	13, 281, 386, 392
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	3 cut(s)	102, 164, 341
Lsp1109I	GCAGC	2 cut(s)	148, 405
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	16, 339, 404
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	40, 212
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	2 cut(s)	276, 387
MwoI	GCNNNNNNNGC	7 cut(s)	167, 208, 274, 283, 287, 332, 416
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	4 cut(s)	13, 281, 386, 392
NlaIV	GGNNCC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	163, 395
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	276, 387
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	162, 394
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	9 cut(s)	37, 103, 183, 225, 237, 292, 310, 369, 398
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	276, 387
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	40, 212
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	337, 367
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	40, 212
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	2 cut(s)	161, 393
TspDTI	ATGAA	3 cut(s)	17, 93, 377
TspRI	CASTG	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.