divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g15942 FvH4_3g15943 |
| rosa_chinensis | RchiOBHm_Chr2g0132201 RchiOBHm_Chr5g0026881 |
| rosa_laevigata | RLG00000032967 |
| rosa_multiflora | Rmu_sc0000395.1_g000031 Rmu_sc0000395.1_g000032 Rmu_sc0014333.1_g000001 Rmu_ssc0000172.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00358840 |
| rosa_samantha | Rh1CG019100 Rh1DG123800 Rh1DG123900 Rh1DG125900 Rh1DG133500 Rh2BG362300 Rh2BG531200 Rh2DG540200 Rh4AG122900 Rh4AG177700 Rh5BG186700 Rh5BG186800 Rh5CG206100 Rh5DG188300 Rh5DG188400 Rh6CG181800 Rh6CG232600 Rh6DG095900 Rh6DG173000 Rh6DG173100 |
| rosa_wichuraiana | Rw5G017200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 738 |
| Acc36I | ACCTGC | 1 cut(s) | 377 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 682 |
| AccI | GTMKAC | 1 cut(s) | 415 |
| AccII | CGCG | 2 cut(s) | 420, 599 |
| AciI | CCGC | 5 cut(s) | 597, 599, 638, 922, 1474 |
| AclWI | GGATC | 3 cut(s) | 247, 416, 902 |
| AcoI | YGGCCR | 1 cut(s) | 594 |
| AcsI | RAATTY | 1 cut(s) | 1097 |
| AcuI | CTGAAG | 4 cut(s) | 536, 674, 1213, 1481 |
| AfaI | GTAC | 1 cut(s) | 144 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 377, 682, 1024 |
| AflII | CTTAAG | 1 cut(s) | 1154 |
| AhlI | ACTAGT | 1 cut(s) | 1447 |
| Alw21I | GWGCWC | 4 cut(s) | 477, 1092, 1442, 1491 |
| Alw26I | GTCTC | 6 cut(s) | 198, 339, 534, 880, 1114, 1392 |
| Alw44I | GTGCAC | 2 cut(s) | 473, 1438 |
| AlwI | GGATC | 3 cut(s) | 247, 416, 902 |
| Ama87I | CYCGRG | 1 cut(s) | 1388 |
| AoxI | GGCC | 3 cut(s) | 133, 594, 1019 |
| ApaLI | GTGCAC | 2 cut(s) | 473, 1438 |
| ApoI | RAATTY | 1 cut(s) | 1097 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 314, 346 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 818 |
| AspLEI | GCGC | 2 cut(s) | 739, 1459 |
| AspS9I | GGNCC | 2 cut(s) | 134, 1222 |
| AsuHPI | GGTGA | 3 cut(s) | 99, 644, 806 |
| AvaI | CYCGRG | 1 cut(s) | 1388 |
| AvaII | GGWCC | 1 cut(s) | 1222 |
| AxyI | CCTNAGG | 1 cut(s) | 1482 |
| BaeGI | GKGCMC | 2 cut(s) | 477, 1442 |
| BanII | GRGCYC | 1 cut(s) | 1533 |
| BauI | CACGAG | 1 cut(s) | 560 |
| Bbv12I | GWGCWC | 4 cut(s) | 477, 1092, 1442, 1491 |
| BccI | CCATC | 1 cut(s) | 1178 |
| BceAI | ACGGC | 1 cut(s) | 148 |
| BcoDI | GTCTC | 6 cut(s) | 198, 339, 534, 880, 1114, 1392 |
| BcuI | ACTAGT | 1 cut(s) | 1447 |
| BfaI | CTAG | 1 cut(s) | 1448 |
| BfmI | CTRYAG | 1 cut(s) | 384 |
| BfrI | CTTAAG | 1 cut(s) | 1154 |
| BfuAI | ACCTGC | 1 cut(s) | 377 |
| BmcAI | AGTACT | 1 cut(s) | 144 |
| Bme18I | GGWCC | 1 cut(s) | 1222 |
| BmeT110I | CYCGRG | 1 cut(s) | 1388 |
| BmgT120I | GGNCC | 2 cut(s) | 134, 1222 |
| BmiI | GGNNCC | 5 cut(s) | 276, 815, 969, 1235, 1530 |
| BmrI | ACTGGG | 3 cut(s) | 251, 1175, 1545 |
| BmsI | GCATC | 3 cut(s) | 724, 1048, 1467 |
| BmuI | ACTGGG | 3 cut(s) | 251, 1175, 1545 |
| BpmI | CTGGAG | 2 cut(s) | 167, 954 |
| Bpu10I | CCTNAGC | 1 cut(s) | 855 |
| BpuEI | CTTGAG | 1 cut(s) | 554 |
| BsaI | GGTCTC | 1 cut(s) | 1114 |
| BsaJI | CCNNGG | 3 cut(s) | 597, 676, 890 |
| BsaWI | WCCGGW | 3 cut(s) | 25, 265, 1024 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 377, 682, 1024 |
| Bse118I | RCCGGY | 2 cut(s) | 37, 1017 |
| Bse1I | ACTGG | 9 cut(s) | 150, 257, 478, 937, 977, 1170, 1333, 1496, 1551 |
| Bse21I | CCTNAGG | 1 cut(s) | 1482 |
| Bse3DI | GCAATG | 1 cut(s) | 1194 |
| BseDI | CCNNGG | 3 cut(s) | 597, 676, 890 |
| BseGI | GGATG | 2 cut(s) | 1375, 1482 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 377, 682, 1024 |
| BseMI | GCAATG | 1 cut(s) | 1194 |
| BseMII | CTCAG | 2 cut(s) | 869, 1473 |
| BseNI | ACTGG | 9 cut(s) | 150, 257, 478, 937, 977, 1170, 1333, 1496, 1551 |
| BseRI | GAGGAG | 3 cut(s) | 140, 1082, 1499 |
| BseSI | GKGCMC | 2 cut(s) | 477, 1442 |
| BsgI | GTGCAG | 1 cut(s) | 1146 |
| Bsh1236I | CGCG | 2 cut(s) | 420, 599 |
| BshFI | GGCC | 3 cut(s) | 135, 596, 1021 |
| BsiHKAI | GWGCWC | 4 cut(s) | 477, 1092, 1442, 1491 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1388 |
| BsiSI | CCGG | 6 cut(s) | 26, 38, 266, 1018, 1025, 1431 |
| BslFI | GGGAC | 3 cut(s) | 245, 1046, 1533 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 377, 682, 1024 |
| BsmAI | GTCTC | 6 cut(s) | 198, 339, 534, 880, 1114, 1392 |
| BsmBI | CGTCTC | 3 cut(s) | 198, 339, 1392 |
| BsmFI | GGGAC | 3 cut(s) | 245, 1046, 1533 |
| BsmI | GAATGC | 4 cut(s) | 83, 170, 570, 1459 |
| BsnI | GGCC | 3 cut(s) | 135, 596, 1021 |
| Bso31I | GGTCTC | 1 cut(s) | 1114 |
| BsoBI | CYCGRG | 1 cut(s) | 1388 |
| Bsp1286I | GDGCHC | 5 cut(s) | 477, 1092, 1442, 1491, 1533 |
| Bsp143I | GATC | 3 cut(s) | 252, 421, 894 |
| BspACI | CCGC | 5 cut(s) | 597, 599, 638, 922, 1474 |
| BspANI | GGCC | 3 cut(s) | 135, 596, 1021 |
| BspCNI | CTCAG | 2 cut(s) | 868, 1474 |
| BspFNI | CGCG | 2 cut(s) | 420, 599 |
| BspLI | GGNNCC | 5 cut(s) | 276, 815, 969, 1235, 1530 |
| BspMAI | CTGCAG | 1 cut(s) | 388 |
| BspMI | ACCTGC | 1 cut(s) | 377 |
| BspPI | GGATC | 3 cut(s) | 247, 416, 902 |
| BspTI | CTTAAG | 1 cut(s) | 1154 |
| BspTNI | GGTCTC | 1 cut(s) | 1114 |
| BsrDI | GCAATG | 1 cut(s) | 1194 |
| BsrFI | RCCGGY | 2 cut(s) | 37, 1017 |
| BsrI | ACTGG | 9 cut(s) | 150, 257, 478, 937, 977, 1170, 1333, 1496, 1551 |
| BssAI | RCCGGY | 2 cut(s) | 37, 1017 |
| BssECI | CCNNGG | 3 cut(s) | 597, 676, 890 |
| BssMI | GATC | 3 cut(s) | 252, 421, 894 |
| BssSI | CACGAG | 1 cut(s) | 560 |
| BssT1I | CCWWGG | 2 cut(s) | 676, 890 |
| Bst2BI | CACGAG | 1 cut(s) | 560 |
| Bst4CI | ACNGT | 3 cut(s) | 1357, 1437, 1567 |
| Bst6I | CTCTTC | 5 cut(s) | 201, 342, 534, 771, 1232 |
| BstAFI | CTTAAG | 1 cut(s) | 1154 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 392, 1471 |
| BstC8I | GCNNGC | 1 cut(s) | 924 |
| BstDEI | CTNAG | 4 cut(s) | 584, 855, 1203, 1482 |
| BstDSI | CCRYGG | 1 cut(s) | 597 |
| BstF5I | GGATG | 2 cut(s) | 1375, 1482 |
| BstFNI | CGCG | 2 cut(s) | 420, 599 |
| BstHHI | GCGC | 2 cut(s) | 739, 1459 |
| BstKTI | GATC | 3 cut(s) | 255, 424, 897 |
| BstMAI | GTCTC | 6 cut(s) | 198, 339, 534, 880, 1114, 1392 |
| BstMBI | GATC | 3 cut(s) | 252, 421, 894 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 392, 1283, 1286, 1289, 1471, 1486 |
| BstNSI | RCATGY | 2 cut(s) | 301, 951 |
| BstSFI | CTRYAG | 1 cut(s) | 384 |
| BstSLI | GKGCMC | 2 cut(s) | 477, 1442 |
| BstUI | CGCG | 2 cut(s) | 420, 599 |
| BstX2I | RGATCY | 1 cut(s) | 252 |
| BstYI | RGATCY | 1 cut(s) | 252 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1482 |
| BsuRI | GGCC | 3 cut(s) | 135, 596, 1021 |
| BtgI | CCRYGG | 1 cut(s) | 597 |
| BtsCI | GGATG | 2 cut(s) | 1375, 1482 |
| BtsI | GCAGTG | 2 cut(s) | 63, 1112 |
| BtsIMutI | CAGTG | 8 cut(s) | 63, 512, 1112, 1163, 1362, 1442, 1489, 1572 |
| BveI | ACCTGC | 1 cut(s) | 377 |
| Cac8I | GCNNGC | 1 cut(s) | 924 |
| CfoI | GCGC | 2 cut(s) | 739, 1459 |
| Cfr10I | RCCGGY | 2 cut(s) | 37, 1017 |
| Cfr13I | GGNCC | 2 cut(s) | 134, 1222 |
| Cfr42I | CCGCGG | 1 cut(s) | 600 |
| CseI | GACGC | 1 cut(s) | 516 |
| Csp6I | GTAC | 1 cut(s) | 143 |
| CviAII | CATG | 8 cut(s) | 298, 351, 544, 592, 948, 1079, 1249, 1524 |
| CviQI | GTAC | 1 cut(s) | 143 |
| DdeI | CTNAG | 4 cut(s) | 584, 855, 1203, 1482 |
| DpnI | GATC | 3 cut(s) | 254, 423, 896 |
| DpnII | GATC | 3 cut(s) | 252, 421, 894 |
| EaeI | YGGCCR | 1 cut(s) | 594 |
| Eam1104I | CTCTTC | 5 cut(s) | 201, 342, 534, 771, 1232 |
| EarI | CTCTTC | 5 cut(s) | 201, 342, 534, 771, 1232 |
| Eco130I | CCWWGG | 2 cut(s) | 676, 890 |
| Eco24I | GRGCYC | 1 cut(s) | 1533 |
| Eco31I | GGTCTC | 1 cut(s) | 1114 |
| Eco47I | GGWCC | 1 cut(s) | 1222 |
| Eco57I | CTGAAG | 4 cut(s) | 536, 674, 1213, 1481 |
| Eco81I | CCTNAGG | 1 cut(s) | 1482 |
| Eco88I | CYCGRG | 1 cut(s) | 1388 |
| EcoRI | GAATTC | 1 cut(s) | 1097 |
| EcoT14I | CCWWGG | 2 cut(s) | 676, 890 |
| EcoT22I | ATGCAT | 3 cut(s) | 83, 170, 311 |
| EcoT38I | GRGCYC | 1 cut(s) | 1533 |
| ErhI | CCWWGG | 2 cut(s) | 676, 890 |
| Esp3I | CGTCTC | 3 cut(s) | 198, 339, 1392 |
| FaeI | CATG | 8 cut(s) | 301, 354, 547, 595, 951, 1082, 1252, 1527 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1196, 1228 |
| FaqI | GGGAC | 3 cut(s) | 245, 1046, 1533 |
| FatI | CATG | 8 cut(s) | 297, 350, 543, 591, 947, 1078, 1248, 1523 |
| FauI | CCCGC | 1 cut(s) | 915 |
| FblI | GTMKAC | 1 cut(s) | 415 |
| FokI | GGATG | 2 cut(s) | 1362, 1489 |
| FriOI | GRGCYC | 1 cut(s) | 1533 |
| FspBI | CTAG | 1 cut(s) | 1448 |
| FspI | TGCGCA | 1 cut(s) | 738 |
| GlaI | GCGC | 2 cut(s) | 738, 1458 |
| GsuI | CTGGAG | 2 cut(s) | 167, 954 |
| HaeIII | GGCC | 3 cut(s) | 135, 596, 1021 |
| HapII | CCGG | 6 cut(s) | 26, 38, 266, 1018, 1025, 1431 |
| HgaI | GACGC | 1 cut(s) | 516 |
| HhaI | GCGC | 2 cut(s) | 739, 1459 |
| Hin1II | CATG | 8 cut(s) | 301, 354, 547, 595, 951, 1082, 1252, 1527 |
| Hin6I | GCGC | 2 cut(s) | 737, 1457 |
| HinP1I | GCGC | 2 cut(s) | 737, 1457 |
| HindIII | AAGCTT | 1 cut(s) | 1172 |
| HpaII | CCGG | 6 cut(s) | 26, 38, 266, 1018, 1025, 1431 |
| HphI | GGTGA | 3 cut(s) | 99, 644, 806 |
| Hpy166II | GTNNAC | 5 cut(s) | 416, 475, 553, 1360, 1440 |
| Hpy188I | TCNGA | 5 cut(s) | 405, 460, 576, 654, 1245 |
| Hpy188III | TCNNGA | 9 cut(s) | 243, 287, 425, 533, 554, 823, 857, 1000, 1390 |
| Hpy8I | GTNNAC | 5 cut(s) | 416, 475, 553, 1360, 1440 |
| Hpy99I | CGWCG | 1 cut(s) | 510 |
| HpyAV | CCTTC | 7 cut(s) | 265, 571, 623, 824, 901, 955, 1124 |
| HpyCH4III | ACNGT | 3 cut(s) | 1357, 1437, 1567 |
| HpyCH4IV | ACGT | 2 cut(s) | 649, 1539 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 392, 1283, 1286, 1289, 1471, 1486 |
| HpyF3I | CTNAG | 4 cut(s) | 584, 855, 1203, 1482 |
| HpySE526I | ACGT | 2 cut(s) | 649, 1539 |
| Hsp92II | CATG | 8 cut(s) | 301, 354, 547, 595, 951, 1082, 1252, 1527 |
| HspAI | GCGC | 2 cut(s) | 737, 1457 |
| KspI | CCGCGG | 1 cut(s) | 600 |
| Kzo9I | GATC | 3 cut(s) | 252, 421, 894 |
| LmnI | GCTCC | 7 cut(s) | 274, 461, 580, 685, 1095, 1486, 1528 |
| LweI | GCATC | 3 cut(s) | 724, 1048, 1467 |
| MaeI | CTAG | 1 cut(s) | 1448 |
| MaeII | ACGT | 2 cut(s) | 649, 1539 |
| MaeIII | GTNAC | 2 cut(s) | 105, 1013 |
| MalI | GATC | 3 cut(s) | 254, 423, 896 |
| MboI | GATC | 3 cut(s) | 252, 421, 894 |
| MfeI | CAATTG | 1 cut(s) | 991 |
| MflI | RGATCY | 1 cut(s) | 252 |
| MhlI | GDGCHC | 5 cut(s) | 477, 1092, 1442, 1491, 1533 |
| MluCI | AATT | 6 cut(s) | 843, 981, 991, 1097, 1326, 1469 |
| MlyI | GAGTC | 2 cut(s) | 1028, 1218 |
| MmeI | TCCRAC | 1 cut(s) | 1200 |
| Mph1103I | ATGCAT | 3 cut(s) | 83, 170, 311 |
| MroXI | GAANNNNTTC | 1 cut(s) | 818 |
| MseI | TTAA | 2 cut(s) | 846, 1155 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1494 |
| MspA1I | CMGCKG | 1 cut(s) | 599 |
| MspCI | CTTAAG | 1 cut(s) | 1154 |
| MspI | CCGG | 6 cut(s) | 26, 38, 266, 1018, 1025, 1431 |
| MunI | CAATTG | 1 cut(s) | 991 |
| Mva1269I | GAATGC | 4 cut(s) | 83, 170, 570, 1459 |
| MvnI | CGCG | 2 cut(s) | 420, 599 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 392, 1283, 1286, 1289, 1471, 1486 |
| NdeII | GATC | 3 cut(s) | 252, 421, 894 |
| NlaIII | CATG | 8 cut(s) | 301, 354, 547, 595, 951, 1082, 1252, 1527 |
| NlaIV | GGNNCC | 5 cut(s) | 276, 815, 969, 1235, 1530 |
| NmuCI | GTSAC | 1 cut(s) | 105 |
| NsbI | TGCGCA | 1 cut(s) | 738 |
| NsiI | ATGCAT | 3 cut(s) | 83, 170, 311 |
| NspI | RCATGY | 2 cut(s) | 301, 951 |
| PctI | GAATGC | 4 cut(s) | 83, 170, 570, 1459 |
| PdmI | GAANNNNTTC | 1 cut(s) | 818 |
| PfeI | GAWTC | 9 cut(s) | 7, 19, 115, 239, 292, 819, 886, 902, 1006 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 682 |
| PleI | GAGTC | 2 cut(s) | 1028, 1217 |
| PpsI | GAGTC | 2 cut(s) | 1028, 1217 |
| PspN4I | GGNNCC | 5 cut(s) | 276, 815, 969, 1235, 1530 |
| PspPI | GGNCC | 2 cut(s) | 134, 1222 |
| PstI | CTGCAG | 1 cut(s) | 388 |
| PsuI | RGATCY | 1 cut(s) | 252 |
| RsaI | GTAC | 1 cut(s) | 144 |
| RsaNI | GTAC | 1 cut(s) | 143 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1494 |
| SacII | CCGCGG | 1 cut(s) | 600 |
| SaqAI | TTAA | 2 cut(s) | 846, 1155 |
| Sau3AI | GATC | 3 cut(s) | 252, 421, 894 |
| Sau96I | GGNCC | 2 cut(s) | 134, 1222 |
| ScaI | AGTACT | 1 cut(s) | 144 |
| SchI | GAGTC | 2 cut(s) | 1028, 1218 |
| SduI | GDGCHC | 5 cut(s) | 477, 1092, 1442, 1491, 1533 |
| SfaNI | GCATC | 3 cut(s) | 724, 1048, 1467 |
| SfcI | CTRYAG | 1 cut(s) | 384 |
| Sfr303I | CCGCGG | 1 cut(s) | 600 |
| SgrAI | CRCCGGYG | 1 cut(s) | 37 |
| SgrBI | CCGCGG | 1 cut(s) | 600 |
| SinI | GGWCC | 1 cut(s) | 1222 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1494 |
| SmlI | CTYRAG | 2 cut(s) | 533, 1154 |
| SmoI | CTYRAG | 2 cut(s) | 533, 1154 |
| SpeI | ACTAGT | 1 cut(s) | 1447 |
| Sse9I | AATT | 6 cut(s) | 843, 981, 991, 1097, 1326, 1469 |
| SsiI | CCGC | 5 cut(s) | 597, 599, 638, 922, 1474 |
| SspMI | CTAG | 1 cut(s) | 1448 |
| StyI | CCWWGG | 2 cut(s) | 676, 890 |
| TaaI | ACNGT | 3 cut(s) | 1357, 1437, 1567 |
| TaiI | ACGT | 2 cut(s) | 652, 1542 |
| TaqI | TCGA | 2 cut(s) | 905, 1095 |
| TasI | AATT | 6 cut(s) | 843, 981, 991, 1097, 1326, 1469 |
| TatI | WGTACW | 1 cut(s) | 142 |
| TauI | GCSGC | 1 cut(s) | 599 |
| TfiI | GAWTC | 9 cut(s) | 7, 19, 115, 239, 292, 819, 886, 902, 1006 |
| Tru1I | TTAA | 2 cut(s) | 846, 1155 |
| Tru9I | TTAA | 2 cut(s) | 846, 1155 |
| TscAI | CASTG | 8 cut(s) | 63, 519, 1119, 1170, 1362, 1442, 1496, 1572 |
| TseFI | GTSAC | 1 cut(s) | 105 |
| Tsp45I | GTSAC | 1 cut(s) | 105 |
| TspDTI | ATGAA | 4 cut(s) | 500, 843, 1154, 1529 |
| TspGWI | ACGGA | 1 cut(s) | 1361 |
| TspRI | CASTG | 8 cut(s) | 63, 519, 1119, 1170, 1362, 1442, 1496, 1572 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 682 |
| Vha464I | CTTAAG | 1 cut(s) | 1154 |
| VneI | GTGCAC | 2 cut(s) | 473, 1438 |
| VpaK11BI | GGWCC | 1 cut(s) | 1222 |
| XapI | RAATTY | 1 cut(s) | 1097 |
| XceI | RCATGY | 2 cut(s) | 301, 951 |
| XmiI | GTMKAC | 1 cut(s) | 415 |
| XmnI | GAANNNNTTC | 1 cut(s) | 818 |
| XspI | CTAG | 1 cut(s) | 1448 |
| ZrmI | AGTACT | 1 cut(s) | 144 |
| Zsp2I | ATGCAT | 3 cut(s) | 83, 170, 311 |