Rh5CG206100

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
20817035 .. 20818609
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG206100.1

Sequence Viewer

Length: 1575 bp
ATGGAGAATCAGCAGGAGAATCCACCGGAGAACCCACCGGCGAACAACCCAGAAGCAGTGGAGAATACTCTTATTGAATGCATTGAAGCAGCCACCAAGTTGTCGTCACCAGAGAATCAGCAGGAGGAGAACGGCCCAGAAGTACTGGAGAATACTCTTGTTGAATGCATTGAAACAGCCAACAAGCTGTCGTCTCTTCTTGCAAGAGCATTGAGAAGCCACAGAGATTTGTTCAAAGAATCAAGAATGGAGATCCCAGTCCCACCGGAGAAGGAGCCAACATTTCGGGAGATTCACATGCCTAAATGCATTGAAGCAGCGAACAAGTTGTCGTCTCTTCTAACAAGAACATGGTTCTTGCAAGGAACTCCCATTTCTGGCTCTGCAGGTTTTGCTTCCTCTCTGAAAAATCGTCTACGCGATCCAGAAACATCAACCATTTTCAACACTATCTGCTCCGATTTCCAAAAGGTGCACCAGTTGATGAAAACCCATAAGAGAACCCGACGCACACTGAAGTTCCAAACTCTTCTTGAGAGAGACATGGGTGTTCACGACCTCGTGCCTCGCATTCAGAAGGAGCTAAGAAGCATGGCCGCGGTTGAAGTTGCATTGAAAGGTGGATTTGAAGGTGAAGCGGTAAAAGAACGTCTGAAGAAGTGTAAGGAGAACACCCAAGGCTTGGAGCTGGAAGTTGAAATCTTGGAGGCTATTCGTGTGCCAGAGAAGAATGATGCGCAAGATTTAGACTTTGTTGCTATCTGGGGTGGAAAAGAAGAGATAGAGGTTTCTGGTGAAGTCTTGGACGAGTGGAACCGATTCTTGAATGAAGGGCTTGATAAAATTAACAATGCTCAGGAACAAGCACAAGTAGTCTCGGTTGAGAATCCAAGGATCACAGAATCGAAGGGAAACGAAATGCGGGCTTATACTGGAGGAAAAGAAGCATGTCAAGGCAAGAAGGGGGAACCAAGTCCAGTAATTTTGTCCAATTGGGTCAGGAAGAATCAAAGTAACCGGCCTCCGGTCTGGGACTCTCTCTGGCTTTGCTTGACTGATGCTGTGATGTTGGGGTGTCATGCCTCTGTGCTCCTCGAATTCTTGTTGGTCTCACTGCCAGAGAGCCAAGAAGGAGAGATGAAGATTGGGCAGCTTAAGGCTGCACTGGGAAAGCTTGATAAAGATGGAAGAAACATTGCAGCTAAGAGAGTCTTGGAGTTGGACCTCTTCAGGTTCCCAAGTCAGAACATGATTGGTGCTGCTGCTGGTGTTCAAGCTGCTGCTGCTGCTGCTGGTGTTCAAGCTGCTGCTGATGATGATAGAACAATTTACCAGTTGAAGAAGCTGTTTATTACAGTGAACTTGATGTTCCGTCATCCCATTTCTCTCGGGAAAGGAGACGAGCCTGTGGTTTCTCTGCAAAGCTATGCCGGACAGTGCACTAAACTAGTGAATGCGCTGAAGCAGAAATTGCGGATGCCTGAGGAGCACTGGAATGTGGAGGTGGAGAGAATGAAGAAGTCATGGGAGCCCCTAAACGTCAGTCGTCCCAGTTTGTTCAAAACAGTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

524

Amino Acids

58.59

Weight (kDa)

5.85

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 738
Acc36I ACCTGC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 682
AccI GTMKAC 1 cut(s) 415
AccII CGCG 2 cut(s) 420, 599
AciI CCGC 5 cut(s) 597, 599, 638, 922, 1474
AclWI GGATC 3 cut(s) 247, 416, 902
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 1 cut(s) 1097
AcuI CTGAAG 4 cut(s) 536, 674, 1213, 1481
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 377, 682, 1024
AflII CTTAAG 1 cut(s) 1154
AhlI ACTAGT 1 cut(s) 1447
Alw21I GWGCWC 4 cut(s) 477, 1092, 1442, 1491
Alw26I GTCTC 6 cut(s) 198, 339, 534, 880, 1114, 1392
Alw44I GTGCAC 2 cut(s) 473, 1438
AlwI GGATC 3 cut(s) 247, 416, 902
Ama87I CYCGRG 1 cut(s) 1388
AoxI GGCC 3 cut(s) 133, 594, 1019
ApaLI GTGCAC 2 cut(s) 473, 1438
ApoI RAATTY 1 cut(s) 1097
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 2 cut(s) 739, 1459
AspS9I GGNCC 2 cut(s) 134, 1222
AsuHPI GGTGA 3 cut(s) 99, 644, 806
AvaI CYCGRG 1 cut(s) 1388
AvaII GGWCC 1 cut(s) 1222
AxyI CCTNAGG 1 cut(s) 1482
BaeGI GKGCMC 2 cut(s) 477, 1442
BanII GRGCYC 1 cut(s) 1533
BauI CACGAG 1 cut(s) 560
Bbv12I GWGCWC 4 cut(s) 477, 1092, 1442, 1491
BccI CCATC 1 cut(s) 1178
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 6 cut(s) 198, 339, 534, 880, 1114, 1392
BcuI ACTAGT 1 cut(s) 1447
BfaI CTAG 1 cut(s) 1448
BfmI CTRYAG 1 cut(s) 384
BfrI CTTAAG 1 cut(s) 1154
BfuAI ACCTGC 1 cut(s) 377
BmcAI AGTACT 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 1222
BmeT110I CYCGRG 1 cut(s) 1388
BmgT120I GGNCC 2 cut(s) 134, 1222
BmiI GGNNCC 5 cut(s) 276, 815, 969, 1235, 1530
BmrI ACTGGG 3 cut(s) 251, 1175, 1545
BmsI GCATC 3 cut(s) 724, 1048, 1467
BmuI ACTGGG 3 cut(s) 251, 1175, 1545
BpmI CTGGAG 2 cut(s) 167, 954
Bpu10I CCTNAGC 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 1114
BsaJI CCNNGG 3 cut(s) 597, 676, 890
BsaWI WCCGGW 3 cut(s) 25, 265, 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 377, 682, 1024
Bse118I RCCGGY 2 cut(s) 37, 1017
Bse1I ACTGG 9 cut(s) 150, 257, 478, 937, 977, 1170, 1333, 1496, 1551
Bse21I CCTNAGG 1 cut(s) 1482
Bse3DI GCAATG 1 cut(s) 1194
BseDI CCNNGG 3 cut(s) 597, 676, 890
BseGI GGATG 2 cut(s) 1375, 1482
BseLI CCNNNNNNNGG 3 cut(s) 377, 682, 1024
BseMI GCAATG 1 cut(s) 1194
BseMII CTCAG 2 cut(s) 869, 1473
BseNI ACTGG 9 cut(s) 150, 257, 478, 937, 977, 1170, 1333, 1496, 1551
BseRI GAGGAG 3 cut(s) 140, 1082, 1499
BseSI GKGCMC 2 cut(s) 477, 1442
BsgI GTGCAG 1 cut(s) 1146
Bsh1236I CGCG 2 cut(s) 420, 599
BshFI GGCC 3 cut(s) 135, 596, 1021
BsiHKAI GWGCWC 4 cut(s) 477, 1092, 1442, 1491
BsiHKCI CYCGRG 1 cut(s) 1388
BsiSI CCGG 6 cut(s) 26, 38, 266, 1018, 1025, 1431
BslFI GGGAC 3 cut(s) 245, 1046, 1533
BslI CCNNNNNNNGG 3 cut(s) 377, 682, 1024
BsmAI GTCTC 6 cut(s) 198, 339, 534, 880, 1114, 1392
BsmBI CGTCTC 3 cut(s) 198, 339, 1392
BsmFI GGGAC 3 cut(s) 245, 1046, 1533
BsmI GAATGC 4 cut(s) 83, 170, 570, 1459
BsnI GGCC 3 cut(s) 135, 596, 1021
Bso31I GGTCTC 1 cut(s) 1114
BsoBI CYCGRG 1 cut(s) 1388
Bsp1286I GDGCHC 5 cut(s) 477, 1092, 1442, 1491, 1533
Bsp143I GATC 3 cut(s) 252, 421, 894
BspACI CCGC 5 cut(s) 597, 599, 638, 922, 1474
BspANI GGCC 3 cut(s) 135, 596, 1021
BspCNI CTCAG 2 cut(s) 868, 1474
BspFNI CGCG 2 cut(s) 420, 599
BspLI GGNNCC 5 cut(s) 276, 815, 969, 1235, 1530
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 3 cut(s) 247, 416, 902
BspTI CTTAAG 1 cut(s) 1154
BspTNI GGTCTC 1 cut(s) 1114
BsrDI GCAATG 1 cut(s) 1194
BsrFI RCCGGY 2 cut(s) 37, 1017
BsrI ACTGG 9 cut(s) 150, 257, 478, 937, 977, 1170, 1333, 1496, 1551
BssAI RCCGGY 2 cut(s) 37, 1017
BssECI CCNNGG 3 cut(s) 597, 676, 890
BssMI GATC 3 cut(s) 252, 421, 894
BssSI CACGAG 1 cut(s) 560
BssT1I CCWWGG 2 cut(s) 676, 890
Bst2BI CACGAG 1 cut(s) 560
Bst4CI ACNGT 3 cut(s) 1357, 1437, 1567
Bst6I CTCTTC 5 cut(s) 201, 342, 534, 771, 1232
BstAFI CTTAAG 1 cut(s) 1154
BstAPI GCANNNNNTGC 2 cut(s) 392, 1471
BstC8I GCNNGC 1 cut(s) 924
BstDEI CTNAG 4 cut(s) 584, 855, 1203, 1482
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 2 cut(s) 1375, 1482
BstFNI CGCG 2 cut(s) 420, 599
BstHHI GCGC 2 cut(s) 739, 1459
BstKTI GATC 3 cut(s) 255, 424, 897
BstMAI GTCTC 6 cut(s) 198, 339, 534, 880, 1114, 1392
BstMBI GATC 3 cut(s) 252, 421, 894
BstMWI GCNNNNNNNGC 6 cut(s) 392, 1283, 1286, 1289, 1471, 1486
BstNSI RCATGY 2 cut(s) 301, 951
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 2 cut(s) 477, 1442
BstUI CGCG 2 cut(s) 420, 599
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 1482
BsuRI GGCC 3 cut(s) 135, 596, 1021
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 2 cut(s) 1375, 1482
BtsI GCAGTG 2 cut(s) 63, 1112
BtsIMutI CAGTG 8 cut(s) 63, 512, 1112, 1163, 1362, 1442, 1489, 1572
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 924
CfoI GCGC 2 cut(s) 739, 1459
Cfr10I RCCGGY 2 cut(s) 37, 1017
Cfr13I GGNCC 2 cut(s) 134, 1222
Cfr42I CCGCGG 1 cut(s) 600
CseI GACGC 1 cut(s) 516
Csp6I GTAC 1 cut(s) 143
CviAII CATG 8 cut(s) 298, 351, 544, 592, 948, 1079, 1249, 1524
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 4 cut(s) 584, 855, 1203, 1482
DpnI GATC 3 cut(s) 254, 423, 896
DpnII GATC 3 cut(s) 252, 421, 894
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 5 cut(s) 201, 342, 534, 771, 1232
EarI CTCTTC 5 cut(s) 201, 342, 534, 771, 1232
Eco130I CCWWGG 2 cut(s) 676, 890
Eco24I GRGCYC 1 cut(s) 1533
Eco31I GGTCTC 1 cut(s) 1114
Eco47I GGWCC 1 cut(s) 1222
Eco57I CTGAAG 4 cut(s) 536, 674, 1213, 1481
Eco81I CCTNAGG 1 cut(s) 1482
Eco88I CYCGRG 1 cut(s) 1388
EcoRI GAATTC 1 cut(s) 1097
EcoT14I CCWWGG 2 cut(s) 676, 890
EcoT22I ATGCAT 3 cut(s) 83, 170, 311
EcoT38I GRGCYC 1 cut(s) 1533
ErhI CCWWGG 2 cut(s) 676, 890
Esp3I CGTCTC 3 cut(s) 198, 339, 1392
FaeI CATG 8 cut(s) 301, 354, 547, 595, 951, 1082, 1252, 1527
FalI AAGNNNNNCTT 2 cut(s) 1196, 1228
FaqI GGGAC 3 cut(s) 245, 1046, 1533
FatI CATG 8 cut(s) 297, 350, 543, 591, 947, 1078, 1248, 1523
FauI CCCGC 1 cut(s) 915
FblI GTMKAC 1 cut(s) 415
FokI GGATG 2 cut(s) 1362, 1489
FriOI GRGCYC 1 cut(s) 1533
FspBI CTAG 1 cut(s) 1448
FspI TGCGCA 1 cut(s) 738
GlaI GCGC 2 cut(s) 738, 1458
GsuI CTGGAG 2 cut(s) 167, 954
HaeIII GGCC 3 cut(s) 135, 596, 1021
HapII CCGG 6 cut(s) 26, 38, 266, 1018, 1025, 1431
HgaI GACGC 1 cut(s) 516
HhaI GCGC 2 cut(s) 739, 1459
Hin1II CATG 8 cut(s) 301, 354, 547, 595, 951, 1082, 1252, 1527
Hin6I GCGC 2 cut(s) 737, 1457
HinP1I GCGC 2 cut(s) 737, 1457
HindIII AAGCTT 1 cut(s) 1172
HpaII CCGG 6 cut(s) 26, 38, 266, 1018, 1025, 1431
HphI GGTGA 3 cut(s) 99, 644, 806
Hpy166II GTNNAC 5 cut(s) 416, 475, 553, 1360, 1440
Hpy188I TCNGA 5 cut(s) 405, 460, 576, 654, 1245
Hpy188III TCNNGA 9 cut(s) 243, 287, 425, 533, 554, 823, 857, 1000, 1390
Hpy8I GTNNAC 5 cut(s) 416, 475, 553, 1360, 1440
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 7 cut(s) 265, 571, 623, 824, 901, 955, 1124
HpyCH4III ACNGT 3 cut(s) 1357, 1437, 1567
HpyCH4IV ACGT 2 cut(s) 649, 1539
HpyF10VI GCNNNNNNNGC 6 cut(s) 392, 1283, 1286, 1289, 1471, 1486
HpyF3I CTNAG 4 cut(s) 584, 855, 1203, 1482
HpySE526I ACGT 2 cut(s) 649, 1539
Hsp92II CATG 8 cut(s) 301, 354, 547, 595, 951, 1082, 1252, 1527
HspAI GCGC 2 cut(s) 737, 1457
KspI CCGCGG 1 cut(s) 600
Kzo9I GATC 3 cut(s) 252, 421, 894
LmnI GCTCC 7 cut(s) 274, 461, 580, 685, 1095, 1486, 1528
LweI GCATC 3 cut(s) 724, 1048, 1467
MaeI CTAG 1 cut(s) 1448
MaeII ACGT 2 cut(s) 649, 1539
MaeIII GTNAC 2 cut(s) 105, 1013
MalI GATC 3 cut(s) 254, 423, 896
MboI GATC 3 cut(s) 252, 421, 894
MfeI CAATTG 1 cut(s) 991
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 5 cut(s) 477, 1092, 1442, 1491, 1533
MluCI AATT 6 cut(s) 843, 981, 991, 1097, 1326, 1469
MlyI GAGTC 2 cut(s) 1028, 1218
MmeI TCCRAC 1 cut(s) 1200
Mph1103I ATGCAT 3 cut(s) 83, 170, 311
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 2 cut(s) 846, 1155
MslI CAYNNNNRTG 1 cut(s) 1494
MspA1I CMGCKG 1 cut(s) 599
MspCI CTTAAG 1 cut(s) 1154
MspI CCGG 6 cut(s) 26, 38, 266, 1018, 1025, 1431
MunI CAATTG 1 cut(s) 991
Mva1269I GAATGC 4 cut(s) 83, 170, 570, 1459
MvnI CGCG 2 cut(s) 420, 599
MwoI GCNNNNNNNGC 6 cut(s) 392, 1283, 1286, 1289, 1471, 1486
NdeII GATC 3 cut(s) 252, 421, 894
NlaIII CATG 8 cut(s) 301, 354, 547, 595, 951, 1082, 1252, 1527
NlaIV GGNNCC 5 cut(s) 276, 815, 969, 1235, 1530
NmuCI GTSAC 1 cut(s) 105
NsbI TGCGCA 1 cut(s) 738
NsiI ATGCAT 3 cut(s) 83, 170, 311
NspI RCATGY 2 cut(s) 301, 951
PctI GAATGC 4 cut(s) 83, 170, 570, 1459
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 9 cut(s) 7, 19, 115, 239, 292, 819, 886, 902, 1006
PflMI CCANNNNNTGG 1 cut(s) 682
PleI GAGTC 2 cut(s) 1028, 1217
PpsI GAGTC 2 cut(s) 1028, 1217
PspN4I GGNNCC 5 cut(s) 276, 815, 969, 1235, 1530
PspPI GGNCC 2 cut(s) 134, 1222
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 1494
SacII CCGCGG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 846, 1155
Sau3AI GATC 3 cut(s) 252, 421, 894
Sau96I GGNCC 2 cut(s) 134, 1222
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 2 cut(s) 1028, 1218
SduI GDGCHC 5 cut(s) 477, 1092, 1442, 1491, 1533
SfaNI GCATC 3 cut(s) 724, 1048, 1467
SfcI CTRYAG 1 cut(s) 384
Sfr303I CCGCGG 1 cut(s) 600
SgrAI CRCCGGYG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 600
SinI GGWCC 1 cut(s) 1222
SmiMI CAYNNNNRTG 1 cut(s) 1494
SmlI CTYRAG 2 cut(s) 533, 1154
SmoI CTYRAG 2 cut(s) 533, 1154
SpeI ACTAGT 1 cut(s) 1447
Sse9I AATT 6 cut(s) 843, 981, 991, 1097, 1326, 1469
SsiI CCGC 5 cut(s) 597, 599, 638, 922, 1474
SspMI CTAG 1 cut(s) 1448
StyI CCWWGG 2 cut(s) 676, 890
TaaI ACNGT 3 cut(s) 1357, 1437, 1567
TaiI ACGT 2 cut(s) 652, 1542
TaqI TCGA 2 cut(s) 905, 1095
TasI AATT 6 cut(s) 843, 981, 991, 1097, 1326, 1469
TatI WGTACW 1 cut(s) 142
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 9 cut(s) 7, 19, 115, 239, 292, 819, 886, 902, 1006
Tru1I TTAA 2 cut(s) 846, 1155
Tru9I TTAA 2 cut(s) 846, 1155
TscAI CASTG 8 cut(s) 63, 519, 1119, 1170, 1362, 1442, 1496, 1572
TseFI GTSAC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 4 cut(s) 500, 843, 1154, 1529
TspGWI ACGGA 1 cut(s) 1361
TspRI CASTG 8 cut(s) 63, 519, 1119, 1170, 1362, 1442, 1496, 1572
Van91I CCANNNNNTGG 1 cut(s) 682
Vha464I CTTAAG 1 cut(s) 1154
VneI GTGCAC 2 cut(s) 473, 1438
VpaK11BI GGWCC 1 cut(s) 1222
XapI RAATTY 1 cut(s) 1097
XceI RCATGY 2 cut(s) 301, 951
XmiI GTMKAC 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 1 cut(s) 1448
ZrmI AGTACT 1 cut(s) 144
Zsp2I ATGCAT 3 cut(s) 83, 170, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.