Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Reverse (-)

20109334 .. 20111776

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGACTGAGCTTCTGAAGCAATATAGTACTGTCATCATCTTCATTTTAGTCACCCTACTCGGCTTTGCAGTAGCTCAGCCTCCTTCGTCGAACTGTAGCCTTCATTTTGACATCCCGTCCAATTCAAGTTGTGGAAATGGAGATTGGGGAGGGTTTCTGCACAATAGCTGTTGTGCAACAGTATTTGATGACTACCTCTACGCATTGGGGCAGCGCGCAAACCAAACAGGATTCATATTTCTGGACTCTACCGAGCAGCGAAATTGCCTTGATGAAATGCAAAAATTTCAAAAGAATGTGTTTGGATGTGGGATTGAGCAGCTGACAAGTGGTGCTGGTGGCTGCTCTGACTTCTCTGTTGGTGAAGTTACTAATAAGTTTAAAGACAACTTGAGAAGTTTAGATGAGAAATGTAACATTCAGAGTATTGATGGATGTGATTTATGTGCTAAGAGTTGGGAAAAAATAAGAGCATTGGACTCACCATCCTCCGATCCAGTGTCTATCAAGGCTGAAACACAAGTTTGCAGGTTTGCGGTTCTGGTGTCATACACAAGTACTAAAATCAAAGATAAAGATCATCTCTTTACAGTTTATAAGTGTCTTGAGGCACAAAAGTATGATGATCAAGATGGGAAGGGTAGAAAGATAAGTACACGCTTATTGATCCTCATCGGAGGCCTCGCAGTAGGAATTGTCATTTCAGTTGTAACAGTTGCATGCATCTTTTCCAAGAAACGTATCAAAACTACTCAACCACCACAACTGGCCAAAAAGACAACTCCATCTCCGAAAATGGAAGCAGCATTCAAGGATGTGATTTTAAAGGAGTCCGGTTGTCCAAAAGTTCCAATCAAGGAAGTGTTATATGCTACAGACAATCTAAGCCCAACACATTTCCTTGGTGAAGGAACTGCTGGAAAGGTCTATAGAGGCATACTATCCAACAATCAGAAAGTAGCAATTAAGCACATTATCGATGATGAAAATGTGGGGACTTTTGCAAGAGAATTTACAAGCTTATCACACATCAGACACCCAAACCTTGTTACTTTGCTTGGTTACTGTCTACAGGAAGATGAGTGTTTCCTTGTGTATGAGCTTTGTCCAAATGGGAACCTCTCAGAATGGCTTTTCGGTAAAGATAAGTGTCTGTCCTGGATCCAAAGGCTTGAGATTGCAATTGATAGCGCTCAAGGTCTATTGTTTCTTCATACATATCCCGAAGGCTGCATTGTTCATCGTGACATCAAGCCAACAAACATTCTTCTTGGGGACAATTTTGAAGCCAAGCTATCAGACTTTGGACTATCTAAGATCATTGAACTGGGTGAAACTTATGTGAGTTCAGAAGTGAGGGGAACTTTTGGTTATGTTGATCCTGACTACCAGAGCAACCACCATGTAAATTCTTCTGGAGATGTCTACAGCTTTGGAATTGTACTTCTACAAATCCTATCAGGAAAGAAGGCAAAAGGCCTTAACAGAGCTGGCAGCATCAATGAATTCGCCGATCCCAAACTTGATGGGGACTACTCAGAAGAAGCTTTCAATCTCACACTTCAGCTGGCTCTATCATGCACAGCACTTAGACAACAAAGACCATCCATGGAGCAAATTGTTGTCAAATTAGAGCAGGCACATGACATATCAACACAGGCAAAGGCCTCTACTTCTGAAGTTTCAATAGATAGCTACCAAAGTTCAAATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

572

Amino Acids

62.96

Weight (kDa)

5.72

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	29 - 162	1.4e-11	SPARK
PK_Tyr_Ser-Thr	PF07714	299 - 544	5.9e-40	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	299 - 491	1.3e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	519
AccI	GTMKAC	2 cut(s)	1069, 1425
AccII	CGCG	1 cut(s)	216
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	6 cut(s)	488, 661, 1156, 1169, 1373, 1508
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	4 cut(s)	284, 1010, 1408, 1505
AcuI	CTGAAG	3 cut(s)	35, 1547, 1698
AfaI	GTAC	4 cut(s)	28, 559, 655, 1443
AfeI	AGCGCT	1 cut(s)	1192
AgsI	TTSAA	8 cut(s)	126, 290, 811, 1286, 1325, 1552, 1686, 1707
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	1157
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AlwI	GGATC	6 cut(s)	488, 661, 1156, 1169, 1373, 1508
Aor51HI	AGCGCT	1 cut(s)	1192
AoxI	GGCC	4 cut(s)	679, 768, 1477, 1665
ApeKI	GCWGC	7 cut(s)	211, 256, 319, 342, 803, 1230, 1494
ApoI	RAATTY	4 cut(s)	284, 1010, 1408, 1505
AspLEI	GCGC	3 cut(s)	216, 218, 1193
AsuHPI	GGTGA	5 cut(s)	43, 374, 474, 917, 1343
BalI	TGGCCA	1 cut(s)	770
BamHI	GGATCC	1 cut(s)	1161
BbvI	GCAGC	7 cut(s)	223, 268, 329, 331, 815, 1217, 1506
BccI	CCATC	6 cut(s)	425, 493, 626, 793, 1520, 1612
BciT130I	CCWGG	1 cut(s)	1159
BclI	TGATCA	1 cut(s)	625
BfmI	CTRYAG	5 cut(s)	94, 873, 928, 1070, 1426
BfoI	RGCGCY	1 cut(s)	1194
BfuAI	ACCTGC	1 cut(s)	519
BisI	GCNGC	7 cut(s)	212, 257, 320, 343, 804, 1231, 1495
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	7 cut(s)	213, 258, 321, 344, 805, 1232, 1496
BmcAI	AGTACT	2 cut(s)	28, 559
Bme1390I	CCNGG	1 cut(s)	1159
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	1118, 1163
BmrFI	CCNGG	1 cut(s)	1159
BmrI	ACTGGG	1 cut(s)	1337
BmsI	GCATC	2 cut(s)	732, 1506
BmuI	ACTGGG	1 cut(s)	1337
BpmI	CTGGAG	1 cut(s)	1437
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	4 cut(s)	412, 626, 1179, 1193
Bsa29I	ATCGAT	1 cut(s)	978
BsaBI	GATNNNNATC	2 cut(s)	576, 671
BsaJI	CCNNGG	2 cut(s)	901, 1608
BsaWI	WCCGGW	1 cut(s)	833
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bse1I	ACTGG	3 cut(s)	497, 771, 1332
Bse8I	GATNNNNATC	2 cut(s)	576, 671
BseBI	CCWGG	1 cut(s)	1159
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	2 cut(s)	901, 1608
BseGI	GGATG	6 cut(s)	111, 311, 440, 485, 820, 1604
BseJI	GATNNNNATC	2 cut(s)	576, 671
BseMII	CTCAG	3 cut(s)	89, 1137, 1551
BseNI	ACTGG	3 cut(s)	497, 771, 1332
BsePI	GCGCGC	1 cut(s)	214
BseXI	GCAGC	7 cut(s)	223, 268, 329, 331, 815, 1217, 1506
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	4 cut(s)	681, 770, 1479, 1667
BshVI	ATCGAT	1 cut(s)	978
BsiSI	CCGG	1 cut(s)	834
BslFI	GGGAC	3 cut(s)	1009, 1289, 1544
BsmFI	GGGAC	3 cut(s)	1009, 1289, 1544
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	4 cut(s)	681, 770, 1479, 1667
Bsp143I	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	1608
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	4 cut(s)	681, 770, 1479, 1667
BspCNI	CTCAG	3 cut(s)	88, 1136, 1550
BspDI	ATCGAT	1 cut(s)	978
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	1118, 1163
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	6 cut(s)	488, 661, 1156, 1169, 1373, 1508
BsrI	ACTGG	3 cut(s)	497, 771, 1332
BssECI	CCNNGG	2 cut(s)	901, 1608
BssHII	GCGCGC	1 cut(s)	214
BssMI	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
BssT1I	CCWWGG	2 cut(s)	901, 1608
Bst2UI	CCWGG	1 cut(s)	1159
Bst4CI	ACNGT	6 cut(s)	31, 95, 181, 592, 715, 1067
BstC8I	GCNNGC	5 cut(s)	216, 721, 1492, 1569, 1638
BstDEI	CTNAG	8 cut(s)	6, 75, 450, 884, 1123, 1314, 1537, 1589
BstDSI	CCRYGG	1 cut(s)	1608
BstF5I	GGATG	6 cut(s)	111, 311, 440, 485, 820, 1604
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	1194
BstHHI	GCGC	3 cut(s)	216, 218, 1193
BstKTI	GATC	8 cut(s)	496, 580, 628, 669, 1164, 1320, 1381, 1516
BstMBI	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	1159
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	1157
BstSFI	CTRYAG	5 cut(s)	94, 873, 928, 1070, 1426
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	7 cut(s)	223, 268, 329, 331, 815, 1217, 1506
BstX2I	RGATCY	1 cut(s)	1161
BstYI	RGATCY	1 cut(s)	1161
Bsu15I	ATCGAT	1 cut(s)	978
BsuRI	GGCC	4 cut(s)	681, 770, 1479, 1667
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	1 cut(s)	1608
BtsCI	GGATG	6 cut(s)	111, 311, 440, 485, 820, 1604
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	5 cut(s)	216, 721, 1492, 1569, 1638
CfoI	GCGC	3 cut(s)	216, 218, 1193
ClaI	ATCGAT	1 cut(s)	978
Csp6I	GTAC	4 cut(s)	27, 558, 654, 1442
CviAII	CATG	5 cut(s)	720, 1403, 1578, 1609, 1643
CviQI	GTAC	4 cut(s)	27, 558, 654, 1442
DdeI	CTNAG	8 cut(s)	6, 75, 450, 884, 1123, 1314, 1537, 1589
DpnI	GATC	8 cut(s)	495, 579, 627, 668, 1163, 1319, 1380, 1515
DpnII	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
DraI	TTTAAA	2 cut(s)	382, 825
DriI	GACNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	768
Eam1105I	GACNNNNNGTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	901, 1608
Eco147I	AGGCCT	3 cut(s)	681, 1479, 1667
Eco47III	AGCGCT	1 cut(s)	1192
Eco57I	CTGAAG	3 cut(s)	35, 1547, 1698
EcoRI	GAATTC	1 cut(s)	1505
EcoRII	CCWGG	1 cut(s)	1157
EcoT14I	CCWWGG	2 cut(s)	901, 1608
EcoT22I	ATGCAT	1 cut(s)	725
ErhI	CCWWGG	2 cut(s)	901, 1608
FaeI	CATG	5 cut(s)	723, 1406, 1581, 1612, 1646
FaqI	GGGAC	3 cut(s)	1009, 1289, 1544
FatI	CATG	5 cut(s)	719, 1402, 1577, 1608, 1642
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	2 cut(s)	1069, 1425
Fnu4HI	GCNGC	7 cut(s)	212, 257, 320, 343, 804, 1231, 1495
FokI	GGATG	6 cut(s)	98, 318, 447, 472, 827, 1591
Fsp4HI	GCNGC	7 cut(s)	212, 257, 320, 343, 804, 1231, 1495
GlaI	GCGC	3 cut(s)	215, 217, 1192
GluI	GCNGC	7 cut(s)	212, 257, 320, 343, 804, 1231, 1495
GsuI	CTGGAG	1 cut(s)	1437
HaeII	RGCGCY	1 cut(s)	1194
HaeIII	GGCC	4 cut(s)	681, 770, 1479, 1667
HapII	CCGG	1 cut(s)	834
HhaI	GCGC	3 cut(s)	216, 218, 1193
Hin1II	CATG	5 cut(s)	723, 1406, 1581, 1612, 1646
Hin6I	GCGC	3 cut(s)	214, 216, 1191
HinP1I	GCGC	3 cut(s)	214, 216, 1191
HindIII	AAGCTT	2 cut(s)	1018, 1545
HinfI	GANTC	4 cut(s)	231, 245, 479, 830
HpaII	CCGG	1 cut(s)	834
HphI	GGTGA	5 cut(s)	43, 374, 474, 917, 1343
Hpy166II	GTNNAC	3 cut(s)	656, 1070, 1426
Hpy188III	TCNNGA	8 cut(s)	242, 605, 629, 1223, 1244, 1382, 1416, 1461
Hpy8I	GTNNAC	3 cut(s)	656, 1070, 1426
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	6 cut(s)	93, 110, 631, 902, 1220, 1462
HpyCH4III	ACNGT	6 cut(s)	31, 95, 181, 592, 715, 1067
HpyCH4IV	ACGT	1 cut(s)	739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	8 cut(s)	6, 75, 450, 884, 1123, 1314, 1537, 1589
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	5 cut(s)	723, 1406, 1581, 1612, 1646
HspAI	GCGC	3 cut(s)	214, 216, 1191
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
LmnI	GCTCC	1 cut(s)	1612
Lsp1109I	GCAGC	7 cut(s)	223, 268, 329, 331, 815, 1217, 1506
LweI	GCATC	2 cut(s)	732, 1506
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	7 cut(s)	49, 367, 413, 709, 1048, 1061, 1244
MalI	GATC	8 cut(s)	495, 579, 627, 668, 1163, 1319, 1380, 1515
MboI	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
MboII	GAAGA	6 cut(s)	31, 1088, 1202, 1259, 1404, 1553
MfeI	CAATTG	1 cut(s)	1182
MflI	RGATCY	1 cut(s)	1161
MlsI	TGGCCA	1 cut(s)	770
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	3 cut(s)	239, 473, 839
MmeI	TCCRAC	1 cut(s)	969
Mox20I	TGGCCA	1 cut(s)	770
Mph1103I	ATGCAT	1 cut(s)	725
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	4 cut(s)	381, 824, 966, 1482
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	2 cut(s)	322, 1567
MspI	CCGG	1 cut(s)	834
MspR9I	CCNGG	1 cut(s)	1159
MunI	CAATTG	1 cut(s)	1182
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	1159
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	1608
NdeII	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
NlaIII	CATG	5 cut(s)	723, 1406, 1581, 1612, 1646
NlaIV	GGNNCC	2 cut(s)	1118, 1163
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	49, 1244
NsiI	ATGCAT	1 cut(s)	725
NspI	RCATGY	1 cut(s)	723
PaeI	GCATGC	1 cut(s)	723
PauI	GCGCGC	1 cut(s)	214
PceI	AGGCCT	3 cut(s)	681, 1479, 1667
PctI	GAATGC	1 cut(s)	806
PfeI	GAWTC	1 cut(s)	231
PfoI	TCCNGGA	1 cut(s)	1157
PkrI	GCNGC	7 cut(s)	213, 258, 321, 344, 805, 1232, 1496
PleI	GAGTC	3 cut(s)	239, 473, 838
PpsI	GAGTC	3 cut(s)	239, 473, 838
PsiI	TTATAA	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	1157
PspGI	CCWGG	1 cut(s)	1157
PspN4I	GGNNCC	2 cut(s)	1118, 1163
PsuI	RGATCY	1 cut(s)	1161
PteI	GCGCGC	1 cut(s)	214
PvuII	CAGCTG	2 cut(s)	322, 1567
RsaI	GTAC	4 cut(s)	28, 559, 655, 1443
RsaNI	GTAC	4 cut(s)	27, 558, 654, 1442
SaqAI	TTAA	4 cut(s)	381, 824, 966, 1482
SatI	GCNGC	7 cut(s)	212, 257, 320, 343, 804, 1231, 1495
Sau3AI	GATC	8 cut(s)	493, 577, 625, 666, 1161, 1317, 1378, 1513
ScaI	AGTACT	2 cut(s)	28, 559
SchI	GAGTC	3 cut(s)	239, 473, 839
ScrFI	CCNGG	1 cut(s)	1159
SfaNI	GCATC	2 cut(s)	732, 1506
SfcI	CTRYAG	5 cut(s)	94, 873, 928, 1070, 1426
SmlI	CTYRAG	4 cut(s)	391, 605, 1172, 1194
SmoI	CTYRAG	4 cut(s)	391, 605, 1172, 1194
SphI	GCATGC	1 cut(s)	723
SseBI	AGGCCT	3 cut(s)	681, 1479, 1667
SsiI	CCGC	1 cut(s)	536
StuI	AGGCCT	3 cut(s)	681, 1479, 1667
StyD4I	CCNGG	1 cut(s)	1157
StyI	CCWWGG	2 cut(s)	901, 1608
TaaI	ACNGT	6 cut(s)	31, 95, 181, 592, 715, 1067
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	2 cut(s)	89, 978
TatI	WGTACW	4 cut(s)	26, 557, 653, 1441
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	4 cut(s)	381, 824, 966, 1482
Tru9I	TTAA	4 cut(s)	381, 824, 966, 1482
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	2 cut(s)	49, 1244
TseI	GCWGC	7 cut(s)	211, 256, 319, 342, 803, 1230, 1494
Tsp45I	GTSAC	2 cut(s)	49, 1244
TspDTI	ATGAA	8 cut(s)	31, 92, 223, 288, 999, 1202, 1229, 1518
TspRI	CASTG	1 cut(s)	504
XapI	RAATTY	4 cut(s)	284, 1010, 1408, 1505
XceI	RCATGY	1 cut(s)	723
XmiI	GTMKAC	2 cut(s)	1069, 1425
ZrmI	AGTACT	2 cut(s)	28, 559
Zsp2I	ATGCAT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.