Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Forward (+)

62534924 .. 62541121

Gene Structure 6198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG415400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAAGTATAGACAAGTACCACCCCTTTTGATTCCAGTCCTTGTGTTCCTCACTGCCATGAATTTTGTTGTCTCACAAGCCCCTGGTGCAGTATGTGTCCTTGATATTCAACAATCTTCATCTTGGAGTAGCTCAAGTTGCGAAGCAGGCACTTGGGGAGGGTTTGTCAGTAATTGTAATTGCGGAGCAGCTTTTGATGACTACCTATCTGCCTTGGGACGCAGGGCAAACCACACTGGTAGACAGCTCTTCTTAAATTCAACAGGGCAGGAAAACTGCTTAGATTTGATGAAGAGTATCAAAAGTGATGTTTTCAGTTGTGGAATTGATAAGCTAACGAGTGGAGGTGGTGGCTGCTCTGACTATACTAAACTAGATGTTGTTCATAATCTAGGTAGCACATTGCAAGATTTAGGCGAAGACTGTAAACTTCTGGGGGCAGCTGGAATATCTGATCAGGCTTGCAGTTCTTGTTTGGGAAAGTGGGAAGAGATTATTGCATCATCAGATAGTAGGGAGTCATCAAAAGTTGAAGCCAATATTTGTGGTTTTGCAGTTTTGGTGTCTTTAACTAGCAACAGGATTCATGACAAGAATTGGGTTCAAGCAGTTTATCAATGCCTTGGAAATCATATACTTTCAGATTCCGGAGATCAGCGGCAGAAAAAACCAAAAAGCAGCTTTCTAAAACTGAAGACAGGTCTTTGGATTCTATCTGGTGGTCTAGCAGGAATTACTGTAATATTAGCAATAAGTATGTGGACCTTATGCAAGAAAAAGAAACCAGTAGAGATCTTTTCAACTGCAAAAGATAAAAAAGAAGACGATCCAAATGATTCACTGACTCAAGAATCCAGCCTCAAAATATCAACTAAACACATTTATGCAGCAACCAACAATTTAAATGCATTGAACTTCATTGGCCAAGGTGAAGCTGGAAAGGTATACAGAGGTGTACTCTTAAATGGGCTTGAGGTTGCAGTCAAGCACATAATCAATGATGGATATGTATCCATCGAGACATTTGTCAGAGAAGTGACAAGCCTTTCACATGTTAGACATCCAAACCTTGTAGCGTTACTTGGACATTGCGTAGATACAGAAGAATGTTTCCTGGTGTATGAATTGTGCAACAATGGGAACCTCTCGGAGTGGCTATTTGGAAAAGATAGAAGTCTTCCATGGATTCAGAGACTTGAGATTGCAATTGATAGTGCAAGGGGTCTTTGGTTTCTTCACACTTTTCCACAAGGCTGCATTGTTCACCGTGATGTCAAGGTAAAGCCTATCCTATTTATCTGCTTCATCTTCTGCTTTTCTATCCTGCTCTCTTTTCTTCAAGCAATTTTTCTTGCCACAATTCTTATTTGCAGCCAACAAACATACTCATCACTGCCAACTTTCAAGCAAAACTGTCCGACTTTGGGTTATCTAAAGTTATGGACGTGGGGCAGTCCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

487

Amino Acids

53.47

Weight (kDa)

7.44

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	31 - 174	1.2e-08	SPARK
PK_Tyr_Ser-Thr	PF07714	304 - 431	7.6e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	304 - 432	5.5e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	241, 945
AccIII	TCCGGA	1 cut(s)	647
AciI	CCGC	2 cut(s)	183, 658
AclWI	GGATC	1 cut(s)	821
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	2 cut(s)	61, 256
AcuI	CTGAAG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	18, 957
AfiI	CCNNNNNNNGG	1 cut(s)	1424
AflIII	ACRYGT	1 cut(s)	1051
AgsI	TTSAA	8 cut(s)	110, 261, 533, 605, 801, 913, 1340, 1405
AjiI	CACGTC	1 cut(s)	1446
AjnI	CCWGG	2 cut(s)	82, 1113
AluBI	AGCT	7 cut(s)	132, 191, 247, 334, 443, 681, 935
AluI	AGCT	7 cut(s)	132, 191, 247, 334, 443, 681, 935
Alw26I	GTCTC	3 cut(s)	76, 1013, 1186
AlwI	GGATC	1 cut(s)	821
Aor13HI	TCCGGA	1 cut(s)	647
AoxI	GGCC	1 cut(s)	922
ApeKI	GCWGC	7 cut(s)	188, 354, 440, 678, 887, 1254, 1371
ApoI	RAATTY	2 cut(s)	61, 256
AspS9I	GGNCC	1 cut(s)	762
AsuHPI	GGTGA	2 cut(s)	941, 1256
AvaII	GGWCC	1 cut(s)	762
BalI	TGGCCA	1 cut(s)	924
BbsI	GAAGAC	4 cut(s)	426, 701, 828, 1169
BbvI	GCAGC	7 cut(s)	200, 341, 452, 690, 899, 1241, 1383
BccI	CCATC	2 cut(s)	995, 1022
BciT130I	CCWGG	2 cut(s)	84, 1115
BciVI	GTATCC	1 cut(s)	1021
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	76, 1013, 1186
BfaI	CTAG	4 cut(s)	374, 392, 573, 725
BfuI	GTATCC	1 cut(s)	1021
BglII	AGATCT	1 cut(s)	792
BisI	GCNGC	8 cut(s)	189, 355, 441, 659, 679, 888, 1255, 1372
BlsI	GCNGC	8 cut(s)	190, 356, 442, 660, 680, 889, 1256, 1373
Bme1390I	CCNGG	2 cut(s)	84, 1115
Bme18I	GGWCC	1 cut(s)	762
BmgBI	CACGTC	1 cut(s)	1446
BmgT120I	GGNCC	1 cut(s)	762
BmiI	GGNNCC	1 cut(s)	1142
BmrFI	CCNGG	2 cut(s)	84, 1115
BmsI	GCATC	1 cut(s)	509
BoxI	GACNNNNGTC	1 cut(s)	1025
BpiI	GAAGAC	4 cut(s)	426, 701, 828, 1169
BplI	GAGNNNNNCTC	2 cut(s)	942, 974
BpuEI	CTTGAG	4 cut(s)	118, 831, 992, 1217
BsaBI	GATNNNNATC	1 cut(s)	1009
BsaJI	CCNNGG	5 cut(s)	82, 213, 622, 925, 1181
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	1424
Bse1I	ACTGG	3 cut(s)	35, 241, 785
Bse3DI	GCAATG	2 cut(s)	401, 1087
Bse8I	GATNNNNATC	1 cut(s)	1009
BseAI	TCCGGA	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	84, 1115
BseDI	CCNNGG	5 cut(s)	82, 213, 622, 925, 1181
BseGI	GGATG	1 cut(s)	1060
BseJI	GATNNNNATC	1 cut(s)	1009
BseLI	CCNNNNNNNGG	1 cut(s)	1424
BseMI	GCAATG	2 cut(s)	401, 1087
BseNI	ACTGG	3 cut(s)	35, 241, 785
BseXI	GCAGC	7 cut(s)	200, 341, 452, 690, 899, 1241, 1383
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	924
BsiSI	CCGG	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	1424
BsmAI	GTCTC	3 cut(s)	76, 1013, 1186
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	924
Bsp13I	TCCGGA	1 cut(s)	647
Bsp143I	GATC	4 cut(s)	454, 652, 792, 826
Bsp19I	CCATGG	1 cut(s)	1181
BspACI	CCGC	2 cut(s)	183, 658
BspANI	GGCC	1 cut(s)	924
BspEI	TCCGGA	1 cut(s)	647
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	1142
BspPI	GGATC	1 cut(s)	821
BspQI	GCTCTTC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	401, 1087
BsrI	ACTGG	3 cut(s)	35, 241, 785
BssECI	CCNNGG	5 cut(s)	82, 213, 622, 925, 1181
BssMI	GATC	4 cut(s)	454, 652, 792, 826
BssNAI	GTATAC	1 cut(s)	946
BssT1I	CCWWGG	4 cut(s)	213, 622, 925, 1181
Bst1107I	GTATAC	1 cut(s)	946
Bst2UI	CCWGG	2 cut(s)	84, 1115
Bst4CI	ACNGT	4 cut(s)	425, 739, 1268, 1415
Bst6I	CTCTTC	3 cut(s)	254, 287, 483
BstC8I	GCNNGC	2 cut(s)	148, 463
BstDEI	CTNAG	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	1181
BstF5I	GGATG	1 cut(s)	1060
BstKTI	GATC	4 cut(s)	457, 655, 795, 829
BstMAI	GTCTC	3 cut(s)	76, 1013, 1186
BstMBI	GATC	4 cut(s)	454, 652, 792, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 138, 147
BstNI	CCWGG	2 cut(s)	84, 1115
BstNSI	RCATGY	1 cut(s)	1055
BstPAI	GACNNNNGTC	1 cut(s)	1025
BstSCI	CCNGG	2 cut(s)	82, 1113
BstV1I	GCAGC	7 cut(s)	200, 341, 452, 690, 899, 1241, 1383
BstV2I	GAAGAC	4 cut(s)	426, 701, 828, 1169
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
BstZ17I	GTATAC	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	1021
BsuRI	GGCC	1 cut(s)	924
BtgI	CCRYGG	1 cut(s)	1181
BtrI	CACGTC	1 cut(s)	1446
BtsCI	GGATG	1 cut(s)	1060
BtsI	GCAGTG	2 cut(s)	51, 1391
BtsIMutI	CAGTG	4 cut(s)	51, 234, 839, 1391
Cac8I	GCNNGC	2 cut(s)	148, 463
CciI	TCATGA	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	762
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	17, 956
CspCI	CAANNNNNGTGG	4 cut(s)	9, 44, 526, 561
CviAII	CATG	4 cut(s)	58, 587, 1052, 1182
CviQI	GTAC	2 cut(s)	17, 956
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	4 cut(s)	456, 654, 794, 828
DpnII	GATC	4 cut(s)	454, 652, 792, 826
DraI	TTTAAA	1 cut(s)	903
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	3 cut(s)	254, 287, 483
EarI	CTCTTC	3 cut(s)	254, 287, 483
Eco130I	CCWWGG	4 cut(s)	213, 622, 925, 1181
Eco47I	GGWCC	1 cut(s)	762
Eco57I	CTGAAG	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	82, 1113
EcoT14I	CCWWGG	4 cut(s)	213, 622, 925, 1181
EcoT22I	ATGCAT	1 cut(s)	910
ErhI	CCWWGG	4 cut(s)	213, 622, 925, 1181
FaeI	CATG	4 cut(s)	61, 590, 1055, 1185
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	57, 586, 1051, 1181
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	2 cut(s)	241, 945
Fnu4HI	GCNGC	8 cut(s)	189, 355, 441, 659, 679, 888, 1255, 1372
FokI	GGATG	1 cut(s)	1047
Fsp4HI	GCNGC	8 cut(s)	189, 355, 441, 659, 679, 888, 1255, 1372
FspBI	CTAG	4 cut(s)	374, 392, 573, 725
GluI	GCNGC	8 cut(s)	189, 355, 441, 659, 679, 888, 1255, 1372
HaeIII	GGCC	1 cut(s)	924
HapII	CCGG	1 cut(s)	648
HgaI	GACGC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	61, 590, 1055, 1185
HinfI	GANTC	9 cut(s)	31, 518, 583, 644, 709, 836, 844, 851, 1186
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	2 cut(s)	941, 1256
Hpy166II	GTNNAC	6 cut(s)	242, 428, 762, 946, 956, 1264
Hpy188I	TCNGA	8 cut(s)	361, 454, 508, 643, 1031, 1150, 1191, 1419
Hpy188III	TCNNGA	4 cut(s)	587, 648, 848, 1018
Hpy8I	GTNNAC	6 cut(s)	242, 428, 762, 946, 956, 1264
HpyCH4III	ACNGT	4 cut(s)	425, 739, 1268, 1415
HpyCH4IV	ACGT	1 cut(s)	1445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 138, 147
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	1445
Hsp92II	CATG	4 cut(s)	61, 590, 1055, 1185
Kpn2I	TCCGGA	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	454, 652, 792, 826
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	7 cut(s)	200, 341, 452, 690, 899, 1241, 1383
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	4 cut(s)	374, 392, 573, 725
MaeII	ACGT	1 cut(s)	1445
MaeIII	GTNAC	2 cut(s)	1036, 1077
MalI	GATC	4 cut(s)	456, 654, 794, 828
MboI	GATC	4 cut(s)	454, 652, 792, 826
MfeI	CAATTG	1 cut(s)	1206
MflI	RGATCY	1 cut(s)	792
MlsI	TGGCCA	1 cut(s)	924
MluNI	TGGCCA	1 cut(s)	924
MlyI	GAGTC	2 cut(s)	527, 838
MmeI	TCCRAC	1 cut(s)	1442
MnlI	CCTC	7 cut(s)	59, 152, 338, 869, 944, 967, 1154
Mox20I	TGGCCA	1 cut(s)	924
Mph1103I	ATGCAT	1 cut(s)	910
MroI	TCCGGA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	924
MseI	TTAA	4 cut(s)	254, 569, 902, 962
MslI	CAYNNNNRTG	3 cut(s)	56, 882, 1269
Msp20I	TGGCCA	1 cut(s)	924
MspA1I	CMGCKG	2 cut(s)	443, 658
MspI	CCGG	1 cut(s)	648
MspR9I	CCNGG	2 cut(s)	84, 1115
MunI	CAATTG	1 cut(s)	1206
MvaI	CCWGG	2 cut(s)	84, 1115
MwoI	GCNNNNNNNGC	3 cut(s)	86, 138, 147
NcoI	CCATGG	1 cut(s)	1181
NdeII	GATC	4 cut(s)	454, 652, 792, 826
NlaIII	CATG	4 cut(s)	61, 590, 1055, 1185
NlaIV	GGNNCC	1 cut(s)	1142
NmuCI	GTSAC	1 cut(s)	1036
NsiI	ATGCAT	1 cut(s)	910
NspI	RCATGY	1 cut(s)	1055
PagI	TCATGA	1 cut(s)	586
PciI	ACATGT	1 cut(s)	1051
PciSI	GCTCTTC	1 cut(s)	254
PfeI	GAWTC	7 cut(s)	31, 583, 644, 709, 836, 851, 1186
PkrI	GCNGC	8 cut(s)	190, 356, 442, 660, 680, 889, 1256, 1373
PleI	GAGTC	2 cut(s)	526, 838
PpsI	GAGTC	2 cut(s)	526, 838
PscI	ACATGT	1 cut(s)	1051
PshAI	GACNNNNGTC	1 cut(s)	1025
Psp6I	CCWGG	2 cut(s)	82, 1113
PspGI	CCWGG	2 cut(s)	82, 1113
PspN4I	GGNNCC	1 cut(s)	1142
PspPI	GGNCC	1 cut(s)	762
PsuI	RGATCY	1 cut(s)	792
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	18, 957
RsaNI	GTAC	2 cut(s)	17, 956
RseI	CAYNNNNRTG	3 cut(s)	56, 882, 1269
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	254, 569, 902, 962
SatI	GCNGC	8 cut(s)	189, 355, 441, 659, 679, 888, 1255, 1372
Sau3AI	GATC	4 cut(s)	454, 652, 792, 826
Sau96I	GGNCC	1 cut(s)	762
SchI	GAGTC	2 cut(s)	527, 838
ScrFI	CCNGG	2 cut(s)	84, 1115
SfaNI	GCATC	1 cut(s)	509
SinI	GGWCC	1 cut(s)	762
SmiI	ATTTAAAT	1 cut(s)	903
SmiMI	CAYNNNNRTG	3 cut(s)	56, 882, 1269
SmlI	CTYRAG	4 cut(s)	133, 846, 971, 1196
SmoI	CTYRAG	4 cut(s)	133, 846, 971, 1196
SsiI	CCGC	2 cut(s)	183, 658
SspI	AATATT	2 cut(s)	541, 744
SspMI	CTAG	4 cut(s)	374, 392, 573, 725
StyD4I	CCNGG	2 cut(s)	82, 1113
StyI	CCWWGG	4 cut(s)	213, 622, 925, 1181
SwaI	ATTTAAAT	1 cut(s)	903
TaaI	ACNGT	4 cut(s)	425, 739, 1268, 1415
TaiI	ACGT	1 cut(s)	1448
TaqI	TCGA	1 cut(s)	1017
TatI	WGTACW	1 cut(s)	955
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	7 cut(s)	31, 583, 644, 709, 836, 851, 1186
Tru1I	TTAA	4 cut(s)	254, 569, 902, 962
Tru9I	TTAA	4 cut(s)	254, 569, 902, 962
TscAI	CASTG	4 cut(s)	58, 241, 846, 1398
TseFI	GTSAC	1 cut(s)	1036
TseI	GCWGC	7 cut(s)	188, 354, 440, 678, 887, 1254, 1371
Tsp45I	GTSAC	1 cut(s)	1036
TspDTI	ATGAA	9 cut(s)	17, 74, 108, 305, 374, 575, 907, 1137, 1294
TspRI	CASTG	4 cut(s)	58, 241, 846, 1398
VpaK11BI	GGWCC	1 cut(s)	762
XapI	RAATTY	2 cut(s)	61, 256
XceI	RCATGY	1 cut(s)	1055
XcmI	CCANNNNNNNNNTGG	1 cut(s)	932
XmiI	GTMKAC	2 cut(s)	241, 945
XspI	CTAG	4 cut(s)	374, 392, 573, 725
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.