Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005183

Physical Location & Seq

Genomic Coordinates Reverse (-)

84834939 .. 84837409

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG625300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGACTGAGCTTCTAAAGCAATCTAGTATTGTGCTCATCTTCATACTGGTCACCACCATCAGCTTTGCAGTCGCTCAGCCTCCTCCGTCGAACTGTAGCCTTCATTTTGATGATGTTCCATCCAATTCAAGTTGTGGAAATGGAGACTGGGGAGGGTTTCTGCACAATAGCTGCTGTGCAACAATATTTGACGAGTACCTCTACGCATTGGGGCAGCGAGCAAACCAAACAGGAAACATATTTCTGGACTCTACCCAGCAGCGGAATTGCCTTGATGTCATGCAAAAATTTCAGAAGAATGTGTTTGGCTGTGGGTTTGAGCAGCTGACTAGTGGTGCAGGTGGCTGCTCTGACTTCTCTATTGGTGATGTTACTAGTAAGTTCGGAGACAAGTTGAGAAGTTTAGATGAGAAATGTAACATTCAGAGTTCTGATGGATGTAGTTCCTGTGCTAAGAGTTGGGGAAATATAAGAGCAGTGCCGTCATGGTCCTCCGATCCACAGTCTATTAAGGCTGAAACACAAGTTTGCAGGTTTGCAGTTCTGGTGACATACTCAAGGACTAAAATCCAAGATAAAGACCATCTCCTTACAGTTTATAAGTGCCTTGAGGCCCAAAAGTATGATGATCAAGCGGGGAAGGGTAGAAAAATAAGCACACGTTTATTGATCCTCATCGGAGGAGCAATAGGTATTATCATTTCAGTAGTAACAGCTGCATACATTTTTTCCAAGAAACGTACCAAAACAACTCAACCACCAGTTGTCGCCAAAAAGACAACTCCTTCGCCCAAAAAAGAAGCAGCATTCAAGGATGTAATTTTTAAGGAGTCCGGCTGTCCAAAAATTCCGATCAAGGAAGTGTTATATGCTACAGACAATCTAAGCCCAGTACATTTCCTTGGTGAAGGAACTGCTGGAAAGGTTTATAGAGGTATACTGTCGAATAATCAGCCAGTAGCAATTAAGCACATTATCGATGATGAAAATGTGGAGTCTTTTGCCAGAGAATTTACAAGCTTATCACACATCAGACACCCCAACCTTGTTACTTTGCTTGGTTACTGTCTACAGGAAGATGAGTGTTTCATTGTGTATGAGCTTTGTCCAAATGGGAACCTCTCAGAATGGCTTTTCGGTAAAGATAAGTGCCTGTCCTGGATCCAGAGGCTTGAGATTGCAATTGATAGCGCTCAAGGTCTATTGTTTCTCCACACGTATCCAGAAGGCTGCATTGTTCATCGTGACATCAAGGCAAAAGGCCTTAACAGAACTGGCAGCATCAATGAATTTGCCGATCCTAAACTCGATGGGGAATACTCAGCAGAAGCTTTCAATCTCACACTTCAGCTGGCTCTGTCATGCACAGAACTTAGACAACAAAGACCATCCATGGAGCAAATTGTTGTCAGATTAGGACAGGCACATGACATATCAACACAGGCAAAGGCCTCTACTCCTGAAGTTTCAATAGACAGCTACCAAAGTTCAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

499

Amino Acids

54.95

Weight (kDa)

6.56

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	30 - 158	6e-13	SPARK
Pkinase	PF00069	299 - 419	2e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	300 - 420	2.8e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005183)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27000 FvH4_4g34600
malus_domestica	MD09G1035700.v1.1 MD13G1090700.v1.1 MD13G1091000.v1.1
prunus_persica	Prupe.1G254900_v2.0.a1 Prupe.3G282300_v2.0.a1
pyrus_communis	pycom16g07810
rosa_chinensis	RchiOBHm_Chr2g0170941 RchiOBHm_Chr4g0443971
rosa_laevigata	RLG00000005871 RLG00000021994
rosa_multiflora	Rmu_sc0010716.1_g000005 Rmu_sc0025148.1_g000001 Rmu_sc0027702.1_g000001 Rmu_sc0029481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080960 Rroxscaffold_5G00384520
rosa_rugosa	Rorug02G0552500 Rorug04G0348600
rosa_samantha	Rh2AG625300 Rh2BG636100 Rh2CG604600 Rh2DG647700 Rh4AG409300 Rh4BG420400 Rh4CG434400 Rh4DG415400
rosa_wichuraiana	Rw2G051790 Rw4G035160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	329, 522
AccI	GTMKAC	2 cut(s)	937, 1069
AciI	CCGC	2 cut(s)	262, 635
AclWI	GGATC	5 cut(s)	491, 664, 1156, 1169, 1292
AcsI	RAATTY	4 cut(s)	287, 846, 1010, 1289
AcuI	CTGAAG	2 cut(s)	1331, 1482
AfaI	GTAC	3 cut(s)	197, 742, 894
AfeI	AGCGCT	1 cut(s)	1192
AfiI	CCNNNNNNNGG	1 cut(s)	261
AflIII	ACRYGT	2 cut(s)	659, 1215
AgsI	TTSAA	5 cut(s)	129, 811, 1336, 1470, 1491
AhlI	ACTAGT	2 cut(s)	329, 374
AjnI	CCWGG	1 cut(s)	1157
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	138, 381
AlwI	GGATC	5 cut(s)	491, 664, 1156, 1169, 1292
Aor51HI	AGCGCT	1 cut(s)	1192
AoxI	GGCC	3 cut(s)	612, 1261, 1449
ApeKI	GCWGC	9 cut(s)	171, 214, 259, 322, 345, 716, 803, 1230, 1278
ApoI	RAATTY	4 cut(s)	287, 846, 1010, 1289
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
AspLEI	GCGC	1 cut(s)	1193
AspS9I	GGNCC	2 cut(s)	489, 613
AsuHPI	GGTGA	4 cut(s)	43, 377, 559, 917
AvaII	GGWCC	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	1161
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	9 cut(s)	158, 226, 271, 332, 334, 703, 815, 1217, 1290
BccI	CCATC	6 cut(s)	65, 127, 428, 591, 1304, 1396
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	1159
BciVI	GTATCC	1 cut(s)	1230
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	138, 381
BcuI	ACTAGT	2 cut(s)	329, 374
BfaI	CTAG	3 cut(s)	24, 330, 375
BfmI	CTRYAG	3 cut(s)	94, 873, 1070
BfoI	RGCGCY	1 cut(s)	1194
BfuAI	ACCTGC	2 cut(s)	329, 522
BfuI	GTATCC	1 cut(s)	1230
BisI	GCNGC	9 cut(s)	172, 215, 260, 323, 346, 717, 804, 1231, 1279
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	9 cut(s)	173, 216, 261, 324, 347, 718, 805, 1232, 1280
Bme1390I	CCNGG	1 cut(s)	1159
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	489, 613
BmiI	GGNNCC	2 cut(s)	1118, 1163
BmrFI	CCNGG	1 cut(s)	1159
BmrI	ACTGGG	2 cut(s)	157, 884
BmsI	GCATC	1 cut(s)	1290
BmuI	ACTGGG	2 cut(s)	157, 884
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	4 cut(s)	541, 629, 1179, 1193
Bsa29I	ATCGAT	1 cut(s)	978
BsaAI	YACGTR	1 cut(s)	1218
BsaBI	GATNNNNATC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	901, 1392
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	6 cut(s)	51, 152, 761, 890, 956, 1279
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	1159
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	2 cut(s)	901, 1392
BseGI	GGATG	4 cut(s)	119, 443, 820, 1388
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	89, 1137, 1335
BseNI	ACTGG	6 cut(s)	51, 152, 761, 890, 956, 1279
BseRI	GAGGAG	2 cut(s)	72, 696
BseXI	GCAGC	9 cut(s)	158, 226, 271, 332, 334, 703, 815, 1217, 1290
BseYI	CCCAGC	1 cut(s)	255
BsgI	GTGCAG	2 cut(s)	146, 357
BshFI	GGCC	3 cut(s)	614, 1263, 1451
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	834
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	138, 381
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	3 cut(s)	614, 1263, 1451
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	1392
BspACI	CCGC	2 cut(s)	262, 635
BspANI	GGCC	3 cut(s)	614, 1263, 1451
BspCNI	CTCAG	3 cut(s)	88, 1136, 1334
BspDI	ATCGAT	1 cut(s)	978
BspLI	GGNNCC	2 cut(s)	1118, 1163
BspMI	ACCTGC	2 cut(s)	329, 522
BspPI	GGATC	5 cut(s)	491, 664, 1156, 1169, 1292
BsrI	ACTGG	6 cut(s)	51, 152, 761, 890, 956, 1279
BssECI	CCNNGG	2 cut(s)	901, 1392
BssMI	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
BssNAI	GTATAC	1 cut(s)	938
BssT1I	CCWWGG	2 cut(s)	901, 1392
Bst1107I	GTATAC	1 cut(s)	938
Bst2UI	CCWGG	1 cut(s)	1159
Bst4CI	ACNGT	5 cut(s)	95, 504, 595, 942, 1067
BstBAI	YACGTR	1 cut(s)	1218
BstC8I	GCNNGC	2 cut(s)	219, 1353
BstDEI	CTNAG	7 cut(s)	6, 75, 453, 884, 1123, 1321, 1373
BstDSI	CCRYGG	1 cut(s)	1392
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	4 cut(s)	119, 443, 820, 1388
BstH2I	RGCGCY	1 cut(s)	1194
BstHHI	GCGC	1 cut(s)	1193
BstKTI	GATC	6 cut(s)	499, 631, 672, 855, 1164, 1300
BstMAI	GTCTC	2 cut(s)	138, 381
BstMBI	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	1159
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	1157
BstSFI	CTRYAG	3 cut(s)	94, 873, 1070
BstV1I	GCAGC	9 cut(s)	158, 226, 271, 332, 334, 703, 815, 1217, 1290
BstX2I	RGATCY	1 cut(s)	1161
BstYI	RGATCY	1 cut(s)	1161
BstZ17I	GTATAC	1 cut(s)	938
Bsu15I	ATCGAT	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	1230
BsuRI	GGCC	3 cut(s)	614, 1263, 1451
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	1 cut(s)	1392
BtsCI	GGATG	4 cut(s)	119, 443, 820, 1388
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	2 cut(s)	329, 522
Cac8I	GCNNGC	2 cut(s)	219, 1353
CfoI	GCGC	1 cut(s)	1193
Cfr13I	GGNCC	2 cut(s)	489, 613
ClaI	ATCGAT	1 cut(s)	978
Csp6I	GTAC	3 cut(s)	196, 741, 893
CviAII	CATG	6 cut(s)	280, 486, 1362, 1393, 1427, 1497
CviQI	GTAC	3 cut(s)	196, 741, 893
DdeI	CTNAG	7 cut(s)	6, 75, 453, 884, 1123, 1321, 1373
DpnI	GATC	6 cut(s)	498, 630, 671, 854, 1163, 1299
DpnII	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
Eco130I	CCWWGG	2 cut(s)	901, 1392
Eco147I	AGGCCT	2 cut(s)	1263, 1451
Eco47I	GGWCC	1 cut(s)	489
Eco47III	AGCGCT	1 cut(s)	1192
Eco57I	CTGAAG	2 cut(s)	1331, 1482
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	1157
EcoT14I	CCWWGG	2 cut(s)	901, 1392
ErhI	CCWWGG	2 cut(s)	901, 1392
FaeI	CATG	6 cut(s)	283, 489, 1365, 1396, 1430, 1500
FatI	CATG	6 cut(s)	279, 485, 1361, 1392, 1426, 1496
FauI	CCCGC	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	2 cut(s)	937, 1069
Fnu4HI	GCNGC	9 cut(s)	172, 215, 260, 323, 346, 717, 804, 1231, 1279
FokI	GGATG	4 cut(s)	106, 450, 827, 1375
Fsp4HI	GCNGC	9 cut(s)	172, 215, 260, 323, 346, 717, 804, 1231, 1279
FspBI	CTAG	3 cut(s)	24, 330, 375
GlaI	GCGC	1 cut(s)	1192
GluI	GCNGC	9 cut(s)	172, 215, 260, 323, 346, 717, 804, 1231, 1279
GsaI	CCCAGC	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	1194
HaeIII	GGCC	3 cut(s)	614, 1263, 1451
HapII	CCGG	1 cut(s)	834
HhaI	GCGC	1 cut(s)	1193
Hin1II	CATG	6 cut(s)	283, 489, 1365, 1396, 1430, 1500
Hin6I	GCGC	1 cut(s)	1191
HinP1I	GCGC	1 cut(s)	1191
HindIII	AAGCTT	2 cut(s)	1018, 1329
HinfI	GANTC	3 cut(s)	248, 830, 995
HpaII	CCGG	1 cut(s)	834
HphI	GGTGA	4 cut(s)	43, 377, 559, 917
Hpy166II	GTNNAC	2 cut(s)	938, 1070
Hpy188III	TCNNGA	5 cut(s)	245, 1165, 1223, 1244, 1460
Hpy8I	GTNNAC	2 cut(s)	938, 1070
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	5 cut(s)	110, 634, 795, 902, 1220
HpyCH4III	ACNGT	5 cut(s)	95, 504, 595, 942, 1067
HpyCH4IV	ACGT	3 cut(s)	661, 739, 1217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	7 cut(s)	6, 75, 453, 884, 1123, 1321, 1373
HpySE526I	ACGT	3 cut(s)	661, 739, 1217
Hsp92II	CATG	6 cut(s)	283, 489, 1365, 1396, 1430, 1500
HspAI	GCGC	1 cut(s)	1191
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
LmnI	GCTCC	2 cut(s)	683, 1396
Lsp1109I	GCAGC	9 cut(s)	158, 226, 271, 332, 334, 703, 815, 1217, 1290
LweI	GCATC	1 cut(s)	1290
MaeI	CTAG	3 cut(s)	24, 330, 375
MaeII	ACGT	3 cut(s)	661, 739, 1217
MaeIII	GTNAC	8 cut(s)	49, 370, 416, 547, 709, 1048, 1061, 1244
MalI	GATC	6 cut(s)	498, 630, 671, 854, 1163, 1299
MboI	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
MboII	GAAGA	3 cut(s)	31, 307, 1088
MfeI	CAATTG	1 cut(s)	1182
MflI	RGATCY	1 cut(s)	1161
MhlI	GDGCHC	1 cut(s)	36
MlyI	GAGTC	3 cut(s)	242, 839, 1004
MseI	TTAA	4 cut(s)	510, 825, 966, 1266
MslI	CAYNNNNRTG	1 cut(s)	108
MspA1I	CMGCKG	4 cut(s)	262, 325, 716, 1351
MspI	CCGG	1 cut(s)	834
MspR9I	CCNGG	1 cut(s)	1159
MunI	CAATTG	1 cut(s)	1182
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	1159
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	1392
NdeII	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
NlaIII	CATG	6 cut(s)	283, 489, 1365, 1396, 1430, 1500
NlaIV	GGNNCC	2 cut(s)	1118, 1163
NmuCI	GTSAC	3 cut(s)	49, 547, 1244
PaqCI	CACCTGC	1 cut(s)	329
PceI	AGGCCT	2 cut(s)	1263, 1451
PctI	GAATGC	1 cut(s)	806
PfoI	TCCNGGA	1 cut(s)	1157
PkrI	GCNGC	9 cut(s)	173, 216, 261, 324, 347, 718, 805, 1232, 1280
PleI	GAGTC	3 cut(s)	242, 838, 1003
PpsI	GAGTC	3 cut(s)	242, 838, 1003
Ppu21I	YACGTR	1 cut(s)	1218
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	1157
PspEI	GGTNACC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	1157
PspN4I	GGNNCC	2 cut(s)	1118, 1163
PspPI	GGNCC	2 cut(s)	489, 613
PsuI	RGATCY	1 cut(s)	1161
PvuII	CAGCTG	3 cut(s)	325, 716, 1351
RsaI	GTAC	3 cut(s)	197, 742, 894
RsaNI	GTAC	3 cut(s)	196, 741, 893
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	510, 825, 966, 1266
SatI	GCNGC	9 cut(s)	172, 215, 260, 323, 346, 717, 804, 1231, 1279
Sau3AI	GATC	6 cut(s)	496, 628, 669, 852, 1161, 1297
Sau96I	GGNCC	2 cut(s)	489, 613
SchI	GAGTC	3 cut(s)	242, 839, 1004
ScrFI	CCNGG	1 cut(s)	1159
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	1290
SfcI	CTRYAG	3 cut(s)	94, 873, 1070
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	4 cut(s)	556, 608, 1172, 1194
SmoI	CTYRAG	4 cut(s)	556, 608, 1172, 1194
SpeI	ACTAGT	2 cut(s)	329, 374
SseBI	AGGCCT	2 cut(s)	1263, 1451
SsiI	CCGC	2 cut(s)	262, 635
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	3 cut(s)	24, 330, 375
StuI	AGGCCT	2 cut(s)	1263, 1451
StyD4I	CCNGG	1 cut(s)	1157
StyI	CCWWGG	2 cut(s)	901, 1392
TaaI	ACNGT	5 cut(s)	95, 504, 595, 942, 1067
TaiI	ACGT	3 cut(s)	664, 742, 1220
TaqI	TCGA	4 cut(s)	89, 944, 978, 1308
TatI	WGTACW	1 cut(s)	892
Tru1I	TTAA	4 cut(s)	510, 825, 966, 1266
Tru9I	TTAA	4 cut(s)	510, 825, 966, 1266
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	3 cut(s)	49, 547, 1244
TseI	GCWGC	9 cut(s)	171, 214, 259, 322, 345, 716, 803, 1230, 1278
Tsp45I	GTSAC	3 cut(s)	49, 547, 1244
TspDTI	ATGAA	6 cut(s)	31, 92, 999, 1078, 1229, 1302
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	4 cut(s)	287, 846, 1010, 1289
XmiI	GTMKAC	2 cut(s)	937, 1069
XspI	CTAG	3 cut(s)	24, 330, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.